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The map label for this gene is farR [C]

Identifier: 146301953

GI number: 146301953

Start: 5069624

End: 5070664

Strand: Direct

Name: farR [C]

Synonym: Fjoh_4217

Alternate gene names: 146301953

Gene position: 5069624-5070664 (Clockwise)

Preceding gene: 146301943

Following gene: 146301954

Centisome position: 83.15

GC content: 30.93

Gene sequence:

>1041_bases
ATGATTAAATTAATTAAAATAGACGAAGATTCGAGGGTTCCAAAATACAAACAGATTGTAGACTCGATTTTGCAGAATAT
TGCTAACGGAAATTTAAAAATAAATCAAAAAATTCCCTCTATAAACAGTTTCAGCGAGGAGTTTTATATGTCTCGTGATA
CGGTTGAAAAAGCTTATAATATTTTAAAAGAACGAAAAATCATTTCTTCAATTAGAGGAAAAGGATATTATATTACGAGA
ACAAAACTGGAGTCTAAAGTCAATATTTTGTTTTTGACCAATAAATTGAGCTCGTATAAAATGAAAACCTACAGTGCTTT
TATTAACACTTTAGGAGCTAATGCGCATGTCGATCTTCAAATTTATCATTGTGATGAAACGCTCTTTTTAAATATTCTCG
ACAAGTTTGAAGGCGCTTATGATTATTATGTTATAACAACCCATTTTAAAACCGATGAACTGAAACATTTAAGTTTTACA
GATGAAGTTGTAGACGCCATTAAAAGAATTCCGCAGGAAAAGCTGGTAATTCTGGATAATATAAAACTGGGAACGGGAGA
TGATGTTATTAAAATCTATCAGGATTTTGAAAACGACATTTACAATGCATTAAAAGAAGGTTTAGAAAAAATAGCCAAAT
ACAAACGTCTTATTTTAGTTTATCCGGATAAAGCAGTTTATCCATATCCGAGAAGAATCCTCCACGGATTCAGGAAATTC
TGTGTTGAACACGAAATCAATTTTGAGATTTTAAGTGAAGTTTACGACGATATGATTCTAAAAAAAGGAGATCTGTTTAT
TACCATTGAAGAATCTGATCTGGTGAATTTAATGAAGCAGATTCGCGATGAAGAGTTTGTTTTAGGAAAAGATATCGGCG
TTATCTCTTATAACGATACACCTTTAAAAGAATTGCTGGGCATAACGGTTATGTCTACTGATTTTAATATAATGGGAGAA
ACTGCAGCAAGGCTTATTTTGAATAAAGAAAAAGGACATTTTAAAGTACCGTTTAATTTTATTGACAGAAATTCTATTTG
A

Upstream 100 bases:

>100_bases
ATCAACACATAAAGCGTTTTTTCAAGTTTGCTTTTTTAAAAAATACAATTAAAAAAATTGGCTGCATGTTTCTCATGAAT
CCAATTTGCAACATACAAGC

Downstream 100 bases:

>100_bases
GGTACTGAAATGCTAAGATACTAAGGTACTAAGGTTCTAAGATACTAAGGCACTGCGTTTTTTTATCGATTATATTAAAG
TCAAATAAAAGGCTTTAGTC

Product: regulatory protein GntR

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MIKLIKIDEDSRVPKYKQIVDSILQNIANGNLKINQKIPSINSFSEEFYMSRDTVEKAYNILKERKIISSIRGKGYYITR
TKLESKVNILFLTNKLSSYKMKTYSAFINTLGANAHVDLQIYHCDETLFLNILDKFEGAYDYYVITTHFKTDELKHLSFT
DEVVDAIKRIPQEKLVILDNIKLGTGDDVIKIYQDFENDIYNALKEGLEKIAKYKRLILVYPDKAVYPYPRRILHGFRKF
CVEHEINFEILSEVYDDMILKKGDLFITIEESDLVNLMKQIRDEEFVLGKDIGVISYNDTPLKELLGITVMSTDFNIMGE
TAARLILNKEKGHFKVPFNFIDRNSI

Sequences:

>Translated_346_residues
MIKLIKIDEDSRVPKYKQIVDSILQNIANGNLKINQKIPSINSFSEEFYMSRDTVEKAYNILKERKIISSIRGKGYYITR
TKLESKVNILFLTNKLSSYKMKTYSAFINTLGANAHVDLQIYHCDETLFLNILDKFEGAYDYYVITTHFKTDELKHLSFT
DEVVDAIKRIPQEKLVILDNIKLGTGDDVIKIYQDFENDIYNALKEGLEKIAKYKRLILVYPDKAVYPYPRRILHGFRKF
CVEHEINFEILSEVYDDMILKKGDLFITIEESDLVNLMKQIRDEEFVLGKDIGVISYNDTPLKELLGITVMSTDFNIMGE
TAARLILNKEKGHFKVPFNFIDRNSI
>Mature_346_residues
MIKLIKIDEDSRVPKYKQIVDSILQNIANGNLKINQKIPSINSFSEEFYMSRDTVEKAYNILKERKIISSIRGKGYYITR
TKLESKVNILFLTNKLSSYKMKTYSAFINTLGANAHVDLQIYHCDETLFLNILDKFEGAYDYYVITTHFKTDELKHLSFT
DEVVDAIKRIPQEKLVILDNIKLGTGDDVIKIYQDFENDIYNALKEGLEKIAKYKRLILVYPDKAVYPYPRRILHGFRKF
CVEHEINFEILSEVYDDMILKKGDLFITIEESDLVNLMKQIRDEEFVLGKDIGVISYNDTPLKELLGITVMSTDFNIMGE
TAARLILNKEKGHFKVPFNFIDRNSI

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40266; Mature: 40266

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLIKIDEDSRVPKYKQIVDSILQNIANGNLKINQKIPSINSFSEEFYMSRDTVEKAYN
CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
ILKERKIISSIRGKGYYITRTKLESKVNILFLTNKLSSYKMKTYSAFINTLGANAHVDLQ
HHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEE
IYHCDETLFLNILDKFEGAYDYYVITTHFKTDELKHLSFTDEVVDAIKRIPQEKLVILDN
EEECCCHHHHHHHHHCCCCEEEEEEEEEECCCCCHHCCCHHHHHHHHHHCCCCCEEEEEC
IKLGTGDDVIKIYQDFENDIYNALKEGLEKIAKYKRLILVYPDKAVYPYPRRILHGFRKF
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHH
CVEHEINFEILSEVYDDMILKKGDLFITIEESDLVNLMKQIRDEEFVLGKDIGVISYNDT
HHHCCCCHHHHHHHHHHHHEECCCEEEEEECHHHHHHHHHHCCCCEEEECCCEEEEECCC
PLKELLGITVMSTDFNIMGETAARLILNKEKGHFKVPFNFIDRNSI
CHHHHHCEEEEECCCCCHHHHHHHHHEECCCCCEECCEEECCCCCC
>Mature Secondary Structure
MIKLIKIDEDSRVPKYKQIVDSILQNIANGNLKINQKIPSINSFSEEFYMSRDTVEKAYN
CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
ILKERKIISSIRGKGYYITRTKLESKVNILFLTNKLSSYKMKTYSAFINTLGANAHVDLQ
HHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEE
IYHCDETLFLNILDKFEGAYDYYVITTHFKTDELKHLSFTDEVVDAIKRIPQEKLVILDN
EEECCCHHHHHHHHHCCCCEEEEEEEEEECCCCCHHCCCHHHHHHHHHHCCCCCEEEEEC
IKLGTGDDVIKIYQDFENDIYNALKEGLEKIAKYKRLILVYPDKAVYPYPRRILHGFRKF
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHH
CVEHEINFEILSEVYDDMILKKGDLFITIEESDLVNLMKQIRDEEFVLGKDIGVISYNDT
HHHCCCCHHHHHHHHHHHHEECCCEEEEEECHHHHHHHHHHCCCCEEEECCCEEEEECCC
PLKELLGITVMSTDFNIMGETAARLILNKEKGHFKVPFNFIDRNSI
CHHHHHCEEEEECCCCCHHHHHHHHHEECCCCCEECCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA