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The map label for this gene is 146301950

Identifier: 146301950

GI number: 146301950

Start: 5064423

End: 5065697

Strand: Reverse

Name: 146301950

Synonym: Fjoh_4214

Alternate gene names: NA

Gene position: 5065697-5064423 (Counterclockwise)

Preceding gene: 146301951

Following gene: 146301949

Centisome position: 83.09

GC content: 37.96

Gene sequence:

>1275_bases
ATGATAATCGGATCAAACCATATTGAATCTCATAACGAGGGATTATTAAAAAAACACCAAAATAAATTGGTTTTTACAGC
ATCAGAAATTGATAATACAGAGGCGATTATCCAAAAATTAATCGACTTTCAAATTGCTATTCCATCTTGGGCTTTAGGAA
CAGGAGGAACAAGATTTGGACGTTTTGCAGGCGGAGGAGAACCTCGTTCAATCGAAGAAAAAATCGAAGATGTTGGATTA
CTTCACAAATTAAACAGCGCTTCGGGAGCAATTTCGCTTCATATTCCGTGGGATATTCCGCAAGATTACAAAGCTATTAA
AGCACTTGCAGCACAGCACAATTTAAAATTTGACGCCATGAACTCGAATACATTTCAGGATCAGGCAGACTCAGAACATA
CTTATAAGTACGGTTCATTACAAAACGTAAACAAAGCAGTCCGCAAACAGGCGATTGCACACAATATAGAAGTTATTAAA
CACGGAATCGAATTAGGATCTGAGTCATTAACAATCTGGCTTGCCGATGGTTCTAACTTTCCGGGGCAATTAAACTTTAG
AAAAGCATATCAAAATACATTAGAAAGTTTAGAAGAAATCTACGATGCCCTGCCTTCAAACTGGAAATTATTTTTAGAAT
ACAAATGTGCTGAGCCTAACTTTTATTCAACGACCGTAGCAGATTGGGGGCAGTCTTACTCGTATGTTAAAAAGTTAGGC
GATAAAGCGCAGACATTAGTCGATTTAGGACACCACCTGCCAAATGCCAATATCGAGCAGATTGTTTCCTTATTATTAAT
GGAAAACAAACTGGGCGGATTCCACTTTAACGATTCAAAATACGGCGATGACGATTTAACTGCCGGAGCTTTAAAACCTT
ATCAGTTATTTTTGATTTTCAATGAATTGGTTGAAGGAATGGACGCAAGAGGAATGAACCACGCCAAAGATTTAGGCTGG
ATGATCGACGCATCACACAACATCAAAGATCCGTTAGAAGATTTGCTGCAGTCTGTAGAAGCTATTATGATTGCTTATGC
ACAAGCACTTTCTGTAGACAGAAAAGCATTAGAAAAAGCACAAGAAGAAAATGATGTGGTAAAAGCACAGGAAATTCTTC
AAAATGCTTTCCGTACAGACGTTCGCGCATTAGTTGCTGAGGCACGTTTACGTTCTGGTGCAGCTTTAAATCCGGTAGAA
TTGTACAGAAACCTTTCTGTAAGAAAAAATCTAATTGGAGAAAGAGGATTAAAAACATTGGCAACAGGACTATAA

Upstream 100 bases:

>100_bases
AAAAATGCCTAAATTACGCAATCGATTTTTTTATGTGTTAAAAACACACGAATAAAGTTAAATTGCATATCTTGTAAACG
CTATTAAAATATAAAGTATT

Downstream 100 bases:

>100_bases
GTTATGAATGTGAGTTGTGAATTATGAGTTAATAAAAAGACTGAACAAAAATCACAATTCACAACTTACAATTTACAATT
AAAAAAATGAATGTAGTTGC

Product: xylose isomerase domain-containing protein

Products: D-xylulose

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MIIGSNHIESHNEGLLKKHQNKLVFTASEIDNTEAIIQKLIDFQIAIPSWALGTGGTRFGRFAGGGEPRSIEEKIEDVGL
LHKLNSASGAISLHIPWDIPQDYKAIKALAAQHNLKFDAMNSNTFQDQADSEHTYKYGSLQNVNKAVRKQAIAHNIEVIK
HGIELGSESLTIWLADGSNFPGQLNFRKAYQNTLESLEEIYDALPSNWKLFLEYKCAEPNFYSTTVADWGQSYSYVKKLG
DKAQTLVDLGHHLPNANIEQIVSLLLMENKLGGFHFNDSKYGDDDLTAGALKPYQLFLIFNELVEGMDARGMNHAKDLGW
MIDASHNIKDPLEDLLQSVEAIMIAYAQALSVDRKALEKAQEENDVVKAQEILQNAFRTDVRALVAEARLRSGAALNPVE
LYRNLSVRKNLIGERGLKTLATGL

Sequences:

>Translated_424_residues
MIIGSNHIESHNEGLLKKHQNKLVFTASEIDNTEAIIQKLIDFQIAIPSWALGTGGTRFGRFAGGGEPRSIEEKIEDVGL
LHKLNSASGAISLHIPWDIPQDYKAIKALAAQHNLKFDAMNSNTFQDQADSEHTYKYGSLQNVNKAVRKQAIAHNIEVIK
HGIELGSESLTIWLADGSNFPGQLNFRKAYQNTLESLEEIYDALPSNWKLFLEYKCAEPNFYSTTVADWGQSYSYVKKLG
DKAQTLVDLGHHLPNANIEQIVSLLLMENKLGGFHFNDSKYGDDDLTAGALKPYQLFLIFNELVEGMDARGMNHAKDLGW
MIDASHNIKDPLEDLLQSVEAIMIAYAQALSVDRKALEKAQEENDVVKAQEILQNAFRTDVRALVAEARLRSGAALNPVE
LYRNLSVRKNLIGERGLKTLATGL
>Mature_424_residues
MIIGSNHIESHNEGLLKKHQNKLVFTASEIDNTEAIIQKLIDFQIAIPSWALGTGGTRFGRFAGGGEPRSIEEKIEDVGL
LHKLNSASGAISLHIPWDIPQDYKAIKALAAQHNLKFDAMNSNTFQDQADSEHTYKYGSLQNVNKAVRKQAIAHNIEVIK
HGIELGSESLTIWLADGSNFPGQLNFRKAYQNTLESLEEIYDALPSNWKLFLEYKCAEPNFYSTTVADWGQSYSYVKKLG
DKAQTLVDLGHHLPNANIEQIVSLLLMENKLGGFHFNDSKYGDDDLTAGALKPYQLFLIFNELVEGMDARGMNHAKDLGW
MIDASHNIKDPLEDLLQSVEAIMIAYAQALSVDRKALEKAQEENDVVKAQEILQNAFRTDVRALVAEARLRSGAALNPVE
LYRNLSVRKNLIGERGLKTLATGL

Specific function: Unknown

COG id: COG4952

COG function: function code M; Predicted sugar isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013451
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 5.3.1.5

Molecular weight: Translated: 47201; Mature: 47201

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIGSNHIESHNEGLLKKHQNKLVFTASEIDNTEAIIQKLIDFQIAIPSWALGTGGTRFG
CCCCCCCCCCCCHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHEEECCCCCCCCCCCCCC
RFAGGGEPRSIEEKIEDVGLLHKLNSASGAISLHIPWDIPQDYKAIKALAAQHNLKFDAM
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEC
NSNTFQDQADSEHTYKYGSLQNVNKAVRKQAIAHNIEVIKHGIELGSESLTIWLADGSNF
CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
PGQLNFRKAYQNTLESLEEIYDALPSNWKLFLEYKCAEPNFYSTTVADWGQSYSYVKKLG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHCCHHHHHHHHH
DKAQTLVDLGHHLPNANIEQIVSLLLMENKLGGFHFNDSKYGDDDLTAGALKPYQLFLIF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHH
NELVEGMDARGMNHAKDLGWMIDASHNIKDPLEDLLQSVEAIMIAYAQALSVDRKALEKA
HHHHCCCCCCCCCHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEENDVVKAQEILQNAFRTDVRALVAEARLRSGAALNPVELYRNLSVRKNLIGERGLKTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ATGL
HHCC
>Mature Secondary Structure
MIIGSNHIESHNEGLLKKHQNKLVFTASEIDNTEAIIQKLIDFQIAIPSWALGTGGTRFG
CCCCCCCCCCCCHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHEEECCCCCCCCCCCCCC
RFAGGGEPRSIEEKIEDVGLLHKLNSASGAISLHIPWDIPQDYKAIKALAAQHNLKFDAM
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEC
NSNTFQDQADSEHTYKYGSLQNVNKAVRKQAIAHNIEVIKHGIELGSESLTIWLADGSNF
CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
PGQLNFRKAYQNTLESLEEIYDALPSNWKLFLEYKCAEPNFYSTTVADWGQSYSYVKKLG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHCCHHHHHHHHH
DKAQTLVDLGHHLPNANIEQIVSLLLMENKLGGFHFNDSKYGDDDLTAGALKPYQLFLIF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHH
NELVEGMDARGMNHAKDLGWMIDASHNIKDPLEDLLQSVEAIMIAYAQALSVDRKALEKA
HHHHCCCCCCCCCHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEENDVVKAQEILQNAFRTDVRALVAEARLRSGAALNPVELYRNLSVRKNLIGERGLKTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ATGL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-xylose

Specific reaction: D-xylose = D-xylulose

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]