Click here to switch to the map view.

The map label for this gene is rhaB [H]

Identifier: 146301949

GI number: 146301949

Start: 5062975

End: 5064336

Strand: Reverse

Name: rhaB [H]

Synonym: Fjoh_4213

Alternate gene names: 146301949

Gene position: 5064336-5062975 (Counterclockwise)

Preceding gene: 146301950

Following gene: 146301948

Centisome position: 83.06

GC content: 32.67

Gene sequence:

>1362_bases
ATGAATGTAGTTGCAATTTTTGATATTGGTAAAACAAACAAAAAAGTATTTTTATTTGACGAAAACTATAGAATTGTCTG
GGAAAAATCAGTTAATTTCGACGAAACAGTCGACGAAGACGGTTTTCCCTGCGAAGATATAGAATTGCTTAAAAACTGGA
TTTTTGAGCGTTTAGAAGAAATAAAAGCTTTAACCAATTATGTTTTAAAAGCCATCAATTTCAGCACTTATGGTGCAAGT
TTTGTCTACATTGATAAAGAAGGAAAAGTTTTAACTCCTCTGTATAATTATTTAAAAGATTATCCGGAGGATTTAAAAAA
TGACTTTTACAATAAATACAAAGGAAAAGAAGCATTTGCTGTAAAAACAGCTTCTCCGGTTTTGGGAAGTTTAAATTCAG
GAATGCAGATTTACCGTTTAAAAGAAGAAAAACCAGAATTATTTGAAAAGGTAGAATATTGTTTACACCTGCCTCAATTT
TTGAGTTTTCTTTTAACCAATGAAGCTTATACCGATATTACAAGCGTAGGCTGTCATACCAATCTTTGGAATTTCAAAAA
AATGAAATACCATAAATGGCTCAAAAGCGAAGGTATTTCAAATAAAATTCCGCCGTTTTATTATGGAAAAGATGTTATAA
AAACAAAAGAAGGTCTGGCAGTAGGAGCAGGGCTTCACGATAGTTCATCGGCCATTATTCCGTATACCATAAACTTTACA
GAACCGTTTGTATTATTATCTACAGGAACCTGGAGTATTTCCTTAAATCCGTTTAATAACAAAGCACTGACTTTTGAAGA
ACTGCAAAATGATTGTTTATGCTATTTGCAATACACAGAAAAGCCTGTAAAAGCAGCAAGACTTTTTGCAGGAAACGAAC
ACGAAGTACAAACCAAACGTTTAGCAGAACATTTTAACGTTCCAGTTGATACATACAAAGAAGTTTACTTTGATAAAAAC
ATCGTATCAAATTTAAGAGCTTTAAATTTCCAGATTATTTACCCTAAAAAGTATAATTTTGATATACTGAAAGAATGCCC
TTTTCAAAAAAGAGACCTTTCGACATTTAAAAGCTACGAAACTGCCTACCATCAATTAATGCTGGATTTGGTAGAACAAC
AAGTATTTTCAACTAATTTAGTCATTCATAACAGTCCGGTAAAGAAAATTTTTGTAGACGGAGGTTTCAGCAAAAATTCT
ATTTTCATGAATTTACTGGCAGAAGCATTCCCGGATGTAGAAGTTTACGCCGCATCAATGGCACAGGCAAGTGCTTTGGG
AGCTGCATTGGCCATTCACCAAAACTGGAATCCTAAACCAATCCAGAATGACTTAATTGATTTGAAATTTTACAAACATT
AA

Upstream 100 bases:

>100_bases
CAACAGGACTATAAGTTATGAATGTGAGTTGTGAATTATGAGTTAATAAAAAGACTGAACAAAAATCACAATTCACAACT
TACAATTTACAATTAAAAAA

Downstream 100 bases:

>100_bases
AATGTATGCCGCAGATTACAGCAGATTTAATTTTAGAAAATCTGCAAGTGTCGGTTTAATCTGTCAAACCTGCGGACAAA
AAATAAAAAAAATAAAAAAT

Product: carbohydrate kinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MNVVAIFDIGKTNKKVFLFDENYRIVWEKSVNFDETVDEDGFPCEDIELLKNWIFERLEEIKALTNYVLKAINFSTYGAS
FVYIDKEGKVLTPLYNYLKDYPEDLKNDFYNKYKGKEAFAVKTASPVLGSLNSGMQIYRLKEEKPELFEKVEYCLHLPQF
LSFLLTNEAYTDITSVGCHTNLWNFKKMKYHKWLKSEGISNKIPPFYYGKDVIKTKEGLAVGAGLHDSSSAIIPYTINFT
EPFVLLSTGTWSISLNPFNNKALTFEELQNDCLCYLQYTEKPVKAARLFAGNEHEVQTKRLAEHFNVPVDTYKEVYFDKN
IVSNLRALNFQIIYPKKYNFDILKECPFQKRDLSTFKSYETAYHQLMLDLVEQQVFSTNLVIHNSPVKKIFVDGGFSKNS
IFMNLLAEAFPDVEVYAASMAQASALGAALAIHQNWNPKPIQNDLIDLKFYKH

Sequences:

>Translated_453_residues
MNVVAIFDIGKTNKKVFLFDENYRIVWEKSVNFDETVDEDGFPCEDIELLKNWIFERLEEIKALTNYVLKAINFSTYGAS
FVYIDKEGKVLTPLYNYLKDYPEDLKNDFYNKYKGKEAFAVKTASPVLGSLNSGMQIYRLKEEKPELFEKVEYCLHLPQF
LSFLLTNEAYTDITSVGCHTNLWNFKKMKYHKWLKSEGISNKIPPFYYGKDVIKTKEGLAVGAGLHDSSSAIIPYTINFT
EPFVLLSTGTWSISLNPFNNKALTFEELQNDCLCYLQYTEKPVKAARLFAGNEHEVQTKRLAEHFNVPVDTYKEVYFDKN
IVSNLRALNFQIIYPKKYNFDILKECPFQKRDLSTFKSYETAYHQLMLDLVEQQVFSTNLVIHNSPVKKIFVDGGFSKNS
IFMNLLAEAFPDVEVYAASMAQASALGAALAIHQNWNPKPIQNDLIDLKFYKH
>Mature_453_residues
MNVVAIFDIGKTNKKVFLFDENYRIVWEKSVNFDETVDEDGFPCEDIELLKNWIFERLEEIKALTNYVLKAINFSTYGAS
FVYIDKEGKVLTPLYNYLKDYPEDLKNDFYNKYKGKEAFAVKTASPVLGSLNSGMQIYRLKEEKPELFEKVEYCLHLPQF
LSFLLTNEAYTDITSVGCHTNLWNFKKMKYHKWLKSEGISNKIPPFYYGKDVIKTKEGLAVGAGLHDSSSAIIPYTINFT
EPFVLLSTGTWSISLNPFNNKALTFEELQNDCLCYLQYTEKPVKAARLFAGNEHEVQTKRLAEHFNVPVDTYKEVYFDKN
IVSNLRALNFQIIYPKKYNFDILKECPFQKRDLSTFKSYETAYHQLMLDLVEQQVFSTNLVIHNSPVKKIFVDGGFSKNS
IFMNLLAEAFPDVEVYAASMAQASALGAALAIHQNWNPKPIQNDLIDLKFYKH

Specific function: Fucose metabolism; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 52336; Mature: 52336

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVVAIFDIGKTNKKVFLFDENYRIVWEKSVNFDETVDEDGFPCEDIELLKNWIFERLEE
CCEEEEEECCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
IKALTNYVLKAINFSTYGASFVYIDKEGKVLTPLYNYLKDYPEDLKNDFYNKYKGKEAFA
HHHHHHHHHHHHCCCCCCEEEEEECCCCCEEHHHHHHHHHCHHHHHHHHHHHHCCCEEEE
VKTASPVLGSLNSGMQIYRLKEEKPELFEKVEYCLHLPQFLSFLLTNEAYTDITSVGCHT
EEECCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
NLWNFKKMKYHKWLKSEGISNKIPPFYYGKDVIKTKEGLAVGAGLHDSSSAIIPYTINFT
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCEEEEEEEECC
EPFVLLSTGTWSISLNPFNNKALTFEELQNDCLCYLQYTEKPVKAARLFAGNEHEVQTKR
CCEEEEECCEEEEEECCCCCCCEEHHHHCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHH
LAEHFNVPVDTYKEVYFDKNIVSNLRALNFQIIYPKKYNFDILKECPFQKRDLSTFKSYE
HHHHCCCCHHHHHHHHHCHHHHHHHHHEEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHH
TAYHQLMLDLVEQQVFSTNLVIHNSPVKKIFVDGGFSKNSIFMNLLAEAFPDVEVYAASM
HHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHH
AQASALGAALAIHQNWNPKPIQNDLIDLKFYKH
HHHHHHHHEEEEECCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MNVVAIFDIGKTNKKVFLFDENYRIVWEKSVNFDETVDEDGFPCEDIELLKNWIFERLEE
CCEEEEEECCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
IKALTNYVLKAINFSTYGASFVYIDKEGKVLTPLYNYLKDYPEDLKNDFYNKYKGKEAFA
HHHHHHHHHHHHCCCCCCEEEEEECCCCCEEHHHHHHHHHCHHHHHHHHHHHHCCCEEEE
VKTASPVLGSLNSGMQIYRLKEEKPELFEKVEYCLHLPQFLSFLLTNEAYTDITSVGCHT
EEECCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
NLWNFKKMKYHKWLKSEGISNKIPPFYYGKDVIKTKEGLAVGAGLHDSSSAIIPYTINFT
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCEEEEEEEECC
EPFVLLSTGTWSISLNPFNNKALTFEELQNDCLCYLQYTEKPVKAARLFAGNEHEVQTKR
CCEEEEECCEEEEEECCCCCCCEEHHHHCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHH
LAEHFNVPVDTYKEVYFDKNIVSNLRALNFQIIYPKKYNFDILKECPFQKRDLSTFKSYE
HHHHCCCCHHHHHHHHHCHHHHHHHHHEEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHH
TAYHQLMLDLVEQQVFSTNLVIHNSPVKKIFVDGGFSKNSIFMNLLAEAFPDVEVYAASM
HHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHH
AQASALGAALAIHQNWNPKPIQNDLIDLKFYKH
HHHHHHHHEEEEECCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA