| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301858
Identifier: 146301858
GI number: 146301858
Start: 4954364
End: 4955512
Strand: Direct
Name: 146301858
Synonym: Fjoh_4122
Alternate gene names: NA
Gene position: 4954364-4955512 (Clockwise)
Preceding gene: 146301852
Following gene: 146301859
Centisome position: 81.26
GC content: 37.77
Gene sequence:
>1149_bases ATGGCAGTATTAAAAGGCATAACGTGGAATCATACAAGAGGTTTATTACCAATGGTTGCAACGGCACAACGCTTTACCGA ATTAAATCCTGATATCGAAATTACCTGGGAGAAAAGAAGTTTACAAGAATTTGCAGATGCTTCTATCGAAGACTTAGCAA AAAGATTCGATTTATTGGTAATCGATCACCCGTGGACAGGTTTTGGCGCACACACAAAAGCGATTCTTCCTTTATCTGAT TATCTTCCGGCTGACTATATTAAAGATCAGGAAATAAATACTGTAGGCAAATCATACGGAAGTTATGTTTTCAGTAATAA ATTATGGGCTCTGCCAATCGATGCTGCTACTCCGGTTGCTGCGGCACGTTTGGATATTTTAGAAAAAAAGGGGCTTGAAG TTCCTCAAACATATGATGATTTATTGGCTTTAGCCAAAAAAGGACTGGTTGCCTTTGCAGGAATTCCTGTTGATGTTTTG ATGAGTTTTTATATGTTTTGCTGTAGTTTAAGCGAAGCTCCGTTTCAGTCTGAAGAAAAAGTTATTTCTGTAGAAACAGG AAAAAAAGCTTTGCAGATGTTTCGCGAACTGGCTCAATTAATCGATCCGAAGAATTTTAACCGAAACCCAATTCAGGTTT ACGAAGCAATGGTTAATACAGATGAAATTGCCTACTGCCCTTTTGCTTACGGATATTCTAATTATTCAAGAGCCGGATAC AGCAAAAACCTGCTTCATTTTTATGATTTGGTTAAGCTGAATAATGCACCTATGATAAGTTCTCTGGGCGGAACAGGATT GGCTGTTTCATCTTTCAGTAAACATATTCCTGAAGCGATTCGTTATGCTGAATTTACAGGATCGTCACAAGTACAGCAGA ATATTTTTGCCGATAACGGAGGTCAGCCGGGACATTTACAAGCCTGGAAAAACGACCGAATCAATTCTATAACTAACAAT TATTTTAAAAATACTTTACCGGCTTTAGAAAGGGCTTTTTTAAGACCAAGATATTCCGGACACATGTATTTTCAGGATCA TGCGGGCGATGTAGTTCGTGATTATTTAATGAACGGCGGTGACGAAGAACTTGTTTTAGATGCATTAAATGCGCTTTATG CTAAATCTTTAAAACTGCAAAATTCATGA
Upstream 100 bases:
>100_bases ATGTAAAAAGTTACATTTTCTTGCCTAATTCAATCTTATTTCTAATTTTGTAATTGTAATTTTTACATTTATTATTTTCC ATACACATAAATCAATACCA
Downstream 100 bases:
>100_bases AACCATTAGAAGGATTAATTGTATTAGAGTTCTGCCAGTTTTTGGCGGGTCCTTCTGCCGGATTAAAGTTAGCCGATTTA GGCGCGAGAATTATTAAAAT
Product: sugar ABC transporter periplasmic component-like protein
Products: NA
Alternate protein names: Sugar ABC Transporter
Number of amino acids: Translated: 382; Mature: 381
Protein sequence:
>382_residues MAVLKGITWNHTRGLLPMVATAQRFTELNPDIEITWEKRSLQEFADASIEDLAKRFDLLVIDHPWTGFGAHTKAILPLSD YLPADYIKDQEINTVGKSYGSYVFSNKLWALPIDAATPVAAARLDILEKKGLEVPQTYDDLLALAKKGLVAFAGIPVDVL MSFYMFCCSLSEAPFQSEEKVISVETGKKALQMFRELAQLIDPKNFNRNPIQVYEAMVNTDEIAYCPFAYGYSNYSRAGY SKNLLHFYDLVKLNNAPMISSLGGTGLAVSSFSKHIPEAIRYAEFTGSSQVQQNIFADNGGQPGHLQAWKNDRINSITNN YFKNTLPALERAFLRPRYSGHMYFQDHAGDVVRDYLMNGGDEELVLDALNALYAKSLKLQNS
Sequences:
>Translated_382_residues MAVLKGITWNHTRGLLPMVATAQRFTELNPDIEITWEKRSLQEFADASIEDLAKRFDLLVIDHPWTGFGAHTKAILPLSD YLPADYIKDQEINTVGKSYGSYVFSNKLWALPIDAATPVAAARLDILEKKGLEVPQTYDDLLALAKKGLVAFAGIPVDVL MSFYMFCCSLSEAPFQSEEKVISVETGKKALQMFRELAQLIDPKNFNRNPIQVYEAMVNTDEIAYCPFAYGYSNYSRAGY SKNLLHFYDLVKLNNAPMISSLGGTGLAVSSFSKHIPEAIRYAEFTGSSQVQQNIFADNGGQPGHLQAWKNDRINSITNN YFKNTLPALERAFLRPRYSGHMYFQDHAGDVVRDYLMNGGDEELVLDALNALYAKSLKLQNS >Mature_381_residues AVLKGITWNHTRGLLPMVATAQRFTELNPDIEITWEKRSLQEFADASIEDLAKRFDLLVIDHPWTGFGAHTKAILPLSDY LPADYIKDQEINTVGKSYGSYVFSNKLWALPIDAATPVAAARLDILEKKGLEVPQTYDDLLALAKKGLVAFAGIPVDVLM SFYMFCCSLSEAPFQSEEKVISVETGKKALQMFRELAQLIDPKNFNRNPIQVYEAMVNTDEIAYCPFAYGYSNYSRAGYS KNLLHFYDLVKLNNAPMISSLGGTGLAVSSFSKHIPEAIRYAEFTGSSQVQQNIFADNGGQPGHLQAWKNDRINSITNNY FKNTLPALERAFLRPRYSGHMYFQDHAGDVVRDYLMNGGDEELVLDALNALYAKSLKLQNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42769; Mature: 42638
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVLKGITWNHTRGLLPMVATAQRFTELNPDIEITWEKRSLQEFADASIEDLAKRFDLLV CCEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCHHHHHHHCCEEE IDHPWTGFGAHTKAILPLSDYLPADYIKDQEINTVGKSYGSYVFSNKLWALPIDAATPVA EECCCCCCCCCCEEEECHHHCCCCHHCCCCHHHHHHHHHCCHHHCCCEEEEECCCCCCHH AARLDILEKKGLEVPQTYDDLLALAKKGLVAFAGIPVDVLMSFYMFCCSLSEAPFQSEEK HHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCC VISVETGKKALQMFRELAQLIDPKNFNRNPIQVYEAMVNTDEIAYCPFAYGYSNYSRAGY EEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCHHCCCCCCCCCC SKNLLHFYDLVKLNNAPMISSLGGTGLAVSSFSKHIPEAIRYAEFTGSSQVQQNIFADNG CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC GQPGHLQAWKNDRINSITNNYFKNTLPALERAFLRPRYSGHMYFQDHAGDVVRDYLMNGG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCC DEELVLDALNALYAKSLKLQNS CHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AVLKGITWNHTRGLLPMVATAQRFTELNPDIEITWEKRSLQEFADASIEDLAKRFDLLV CEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCHHHHHHHCCEEE IDHPWTGFGAHTKAILPLSDYLPADYIKDQEINTVGKSYGSYVFSNKLWALPIDAATPVA EECCCCCCCCCCEEEECHHHCCCCHHCCCCHHHHHHHHHCCHHHCCCEEEEECCCCCCHH AARLDILEKKGLEVPQTYDDLLALAKKGLVAFAGIPVDVLMSFYMFCCSLSEAPFQSEEK HHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCC VISVETGKKALQMFRELAQLIDPKNFNRNPIQVYEAMVNTDEIAYCPFAYGYSNYSRAGY EEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCHHCCCCCCCCCC SKNLLHFYDLVKLNNAPMISSLGGTGLAVSSFSKHIPEAIRYAEFTGSSQVQQNIFADNG CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC GQPGHLQAWKNDRINSITNNYFKNTLPALERAFLRPRYSGHMYFQDHAGDVVRDYLMNGG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCC DEELVLDALNALYAKSLKLQNS CHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA