BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is ucpA [C]

Identifier: 146301857

GI number: 146301857

Start: 4953275

End: 4954039

Strand: Reverse

Name: ucpA [C]

Synonym: Fjoh_4121

Alternate gene names: 146301857

Gene position: 4954039-4953275 (Counterclockwise)

Preceding gene: 146301865

Following gene: 146301856

Centisome position: 81.26

GC content: 38.56

Gene sequence:

>765_bases
ATGTTTTCATTACAAAATAAAAAAGCAGTTATAACAGGAGGCGGAAGCGGGATTGGAAGAGCAATTGCGGCCTTGTTTGC
CAAACAGGGAGCAGAAGTTCATATTATTGATTTATCTATTGAAAGTGCACAGGATGCTGTTGAAGAAATTAAAAATGCAG
GAGGAAACGTTTTTTCGTATGCCTGTAATGTTTCCAGCCAAGCTGATGTTAAGGCAACTTTCGAAAAGATCGGAAATATA
AATATCTTAATCAATAACGCCGGAATCGCAAATGTTGGTAAAGTTGACACGACTTCTGAAGCTGATTTTGACCGTGTAAT
GGATGTAAATGTAAAAGGAGTTTACAACTGTTTGTTTGCAGCGATCCCACAATTCCGACTTTCAAATGGCGGTGTAATCT
TAAACATGGCGTCAATTGCGGCGTGGGTTGGAATCTCAGATCGTTTTGCGTATTCAACTGCAAAAGGCGCTGTTATGGCG
ATGACTTTGTCAGTAGCGAGAGATTATTTAAGTGAAAATATAAGATGTAATTCTATTTCTCCGGCAAGAGTTCACACGCC
TTTTGTGGACGGATTTATTTCTAAAAATTACGCTGGAAAAGAAGAAGAAATGTTCGATAAACTTTCTAAATCACAGCCAA
TAGGACGTATGGGAAAACCAGACGAAATTGCCGCTCTTGCTTTATACTTATGCAGTGAAGAAGCTGGATTTATCACCGGA
TGCGATTACCCAATCGACGGAGGATTTATTAAGTTAAATAATTAA

Upstream 100 bases:

>100_bases
TTAATCGATTACATTTGTAATTGTGCTTTTTACATTTATTATTCATGAGAAGATGTTCGAAGCCTTAATTTGAATTCTAT
AATACTAAATACCATTTAAA

Downstream 100 bases:

>100_bases
AGGTGCTAAGGTTCTAAGATACTAAGGTGCTAAGAAAAAGCTCAGCGACTTAGAATCTTAGCCGCTTAGTACCTCTAAAA
AAAAACTTAGAACCTTAGCC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MFSLQNKKAVITGGGSGIGRAIAALFAKQGAEVHIIDLSIESAQDAVEEIKNAGGNVFSYACNVSSQADVKATFEKIGNI
NILINNAGIANVGKVDTTSEADFDRVMDVNVKGVYNCLFAAIPQFRLSNGGVILNMASIAAWVGISDRFAYSTAKGAVMA
MTLSVARDYLSENIRCNSISPARVHTPFVDGFISKNYAGKEEEMFDKLSKSQPIGRMGKPDEIAALALYLCSEEAGFITG
CDYPIDGGFIKLNN

Sequences:

>Translated_254_residues
MFSLQNKKAVITGGGSGIGRAIAALFAKQGAEVHIIDLSIESAQDAVEEIKNAGGNVFSYACNVSSQADVKATFEKIGNI
NILINNAGIANVGKVDTTSEADFDRVMDVNVKGVYNCLFAAIPQFRLSNGGVILNMASIAAWVGISDRFAYSTAKGAVMA
MTLSVARDYLSENIRCNSISPARVHTPFVDGFISKNYAGKEEEMFDKLSKSQPIGRMGKPDEIAALALYLCSEEAGFITG
CDYPIDGGFIKLNN
>Mature_254_residues
MFSLQNKKAVITGGGSGIGRAIAALFAKQGAEVHIIDLSIESAQDAVEEIKNAGGNVFSYACNVSSQADVKATFEKIGNI
NILINNAGIANVGKVDTTSEADFDRVMDVNVKGVYNCLFAAIPQFRLSNGGVILNMASIAAWVGISDRFAYSTAKGAVMA
MTLSVARDYLSENIRCNSISPARVHTPFVDGFISKNYAGKEEEMFDKLSKSQPIGRMGKPDEIAALALYLCSEEAGFITG
CDYPIDGGFIKLNN

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI66933014, Length=225, Percent_Identity=32.8888888888889, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=31.5384615384615, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=31.4516129032258, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=30.4, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=34.1991341991342, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=32.4427480916031, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI5031737, Length=254, Percent_Identity=29.5275590551181, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=31.6, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=26.3779527559055, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=28.3464566929134, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI83715985, Length=250, Percent_Identity=31.2, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI33667109, Length=209, Percent_Identity=30.622009569378, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI4504505, Length=237, Percent_Identity=28.2700421940928, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI31542939, Length=214, Percent_Identity=26.6355140186916, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=22.5806451612903, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI142976729, Length=194, Percent_Identity=25.7731958762887, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI109715829, Length=253, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=28.2352941176471, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4503301, Length=253, Percent_Identity=29.2490118577075, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI40254986, Length=197, Percent_Identity=30.9644670050761, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI209862901, Length=213, Percent_Identity=24.4131455399061, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI19923983, Length=213, Percent_Identity=24.4131455399061, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI4503817, Length=232, Percent_Identity=26.7241379310345, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI210032110, Length=200, Percent_Identity=23.5, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=28.1767955801105, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI40807363, Length=190, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=33.9920948616601, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1787905, Length=254, Percent_Identity=32.6771653543307, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=29.6, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=29.4117647058824, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=28.3464566929134, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=29.6442687747036, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=28.6852589641434, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=27.5590551181102, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1787335, Length=253, Percent_Identity=26.8774703557312, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=28.0632411067194, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI2367365, Length=252, Percent_Identity=29.3650793650794, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=25, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=26.5193370165746, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=269, Percent_Identity=33.0855018587361, Blast_Score=122, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=33.587786259542, Blast_Score=117, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=31.0756972111554, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=32.4427480916031, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17567345, Length=194, Percent_Identity=34.020618556701, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=31.6205533596838, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=25.8964143426295, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=29.3650793650794, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=29.7709923664122, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=28.1853281853282, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=28.968253968254, Blast_Score=98, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=31.0606060606061, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=30.1526717557252, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=31.8007662835249, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=274, Percent_Identity=30.6569343065693, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=27.8884462151394, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=31.2977099236641, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=31.0344827586207, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=257, Percent_Identity=29.5719844357977, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=30.2564102564103, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=30.4832713754647, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=32.3076923076923, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17564282, Length=200, Percent_Identity=30, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=29.6577946768061, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=31.0606060606061, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=255, Percent_Identity=29.8039215686275, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=31.0861423220974, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=30.0380228136882, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=26.6409266409266, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=26.7175572519084, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=30.078125, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=243, Percent_Identity=30.4526748971193, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=258, Percent_Identity=26.7441860465116, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=201, Percent_Identity=24.3781094527363, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI193203115, Length=198, Percent_Identity=24.7474747474747, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=162, Percent_Identity=30.8641975308642, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=160, Percent_Identity=30.625, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508651, Length=246, Percent_Identity=26.0162601626016, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=244, Percent_Identity=30.327868852459, Blast_Score=92, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6320089, Length=177, Percent_Identity=28.2485875706215, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=262, Percent_Identity=25.5725190839695, Blast_Score=63, Evalue=6e-11,
Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=32.295719844358, Blast_Score=134, Evalue=5e-32,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=30.3501945525292, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=31.2, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=34.251968503937, Blast_Score=124, Evalue=4e-29,
Organism=Drosophila melanogaster, GI17737361, Length=272, Percent_Identity=33.4558823529412, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=29.3172690763052, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=31.25, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI18859837, Length=235, Percent_Identity=31.4893617021277, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=28.9156626506024, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24644337, Length=232, Percent_Identity=28.0172413793103, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281364892, Length=187, Percent_Identity=33.1550802139037, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24640492, Length=203, Percent_Identity=26.6009852216749, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21356301, Length=194, Percent_Identity=30.4123711340206, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24665243, Length=231, Percent_Identity=29.004329004329, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI221331218, Length=231, Percent_Identity=29.004329004329, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24649181, Length=192, Percent_Identity=25, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24665247, Length=232, Percent_Identity=29.3103448275862, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21357673, Length=222, Percent_Identity=27.4774774774775, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221331216, Length=232, Percent_Identity=29.3103448275862, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24641232, Length=231, Percent_Identity=27.7056277056277, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007236, Length=206, Percent_Identity=29.126213592233, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27043; Mature: 27043

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSLQNKKAVITGGGSGIGRAIAALFAKQGAEVHIIDLSIESAQDAVEEIKNAGGNVFSY
CCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHCCCCEEEE
ACNVSSQADVKATFEKIGNINILINNAGIANVGKVDTTSEADFDRVMDVNVKGVYNCLFA
EECCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCHHHEECCHHHHHHHHHH
AIPQFRLSNGGVILNMASIAAWVGISDRFAYSTAKGAVMAMTLSVARDYLSENIRCNSIS
HCCCEEECCCCEEEEHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCEECCCC
PARVHTPFVDGFISKNYAGKEEEMFDKLSKSQPIGRMGKPDEIAALALYLCSEEAGFITG
CCEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEC
CDYPIDGGFIKLNN
CCCCCCCCEEEECC
>Mature Secondary Structure
MFSLQNKKAVITGGGSGIGRAIAALFAKQGAEVHIIDLSIESAQDAVEEIKNAGGNVFSY
CCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHCCCCEEEE
ACNVSSQADVKATFEKIGNINILINNAGIANVGKVDTTSEADFDRVMDVNVKGVYNCLFA
EECCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCHHHEECCHHHHHHHHHH
AIPQFRLSNGGVILNMASIAAWVGISDRFAYSTAKGAVMAMTLSVARDYLSENIRCNSIS
HCCCEEECCCCEEEEHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCEECCCC
PARVHTPFVDGFISKNYAGKEEEMFDKLSKSQPIGRMGKPDEIAALALYLCSEEAGFITG
CCEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEC
CDYPIDGGFIKLNN
CCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]