| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301853
Identifier: 146301853
GI number: 146301853
Start: 4949086
End: 4949922
Strand: Reverse
Name: 146301853
Synonym: Fjoh_4117
Alternate gene names: NA
Gene position: 4949922-4949086 (Counterclockwise)
Preceding gene: 146301854
Following gene: 146301850
Centisome position: 81.19
GC content: 33.81
Gene sequence:
>837_bases ATGAATAACCGAATTGATTCTCATCAGCATTTTTGGAAATTTGATCCCGTTAGAGACAGCTGGATTGATGAAAGTATGTC GAAAATTCAAAGAGATTTCCTTCCGGAAGATTTATTGCCTCTGCTTAAAGAAAACAAGTTTTCGGGTTGTGTAGCAGTTC AGGCAAGTCAGTCTGAACATGAAACCCATTTTCTTGCAGATCTGGCTTCAAAAAATGATTTTATAAAAGGAATCGTAGGC TGGGTTGATCTTCGTGCAGATAATATTTCAGATCGGTTGCGTCATTTTTCTTCGAATAAAACCATTAAAGGATTCCGACA TGTTGTACAAGGTGAAGCCGATGATTTTATGTTTAGAGAAGATTTCCGCAACGGAATTTCGGCTTTAAAAGAGTTTGATT TTACGTATGATATTTTGATTTTTCATCGTCAGTTACCAGCAGCGATAAGTTTGGTAAAAGATTTTCCAAACCAAAAGTTT GTAATAGATCATATTGCAAAACCAGATATTAAATCAGGCATTATAGATTCATGGAAAAGCGGTATAGAAGAAATTGCAAA ATACAATAATGTATGGTGTAAAGTTTCTGGAATGGTCACAGAAGCCGACTGGAAAAACTGGAAACCAGAAGATTTAAAAC CGTACTTGGATGTAATTTTTGAAAATTTCCCAACAGATAAAATACTATACGGTTCAGATTGGCCGGTTCTAAATGTAGCT TCTGATTATAATGAGGTTGTGAAAACTTTAGAAGATTATATTTCGAAATTTTCTATCGAAGACCAGAATAAAATTTGGTT TGAAAATGCAGTTTCGTTTTATAATTTGAATCAATAA
Upstream 100 bases:
>100_bases TTCTGATCGTTCATCTCATACTACAGGACAATTTGTTTTTGTAGATGGCGGTTACGTGCATTTAGATCGTGCTTTAATCA ACGATGTAAACTAATTCAGG
Downstream 100 bases:
>100_bases TTTTTTAGCCGCAGATTAAAGGATTTTCACAGATTTTTTTAATCATTTTAAGCCTTTAATCTGTGGCTAAATATATTTTA CACGCAAACTTGTTAAACAT
Product: amidohydrolase 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 278; Mature: 278
Protein sequence:
>278_residues MNNRIDSHQHFWKFDPVRDSWIDESMSKIQRDFLPEDLLPLLKENKFSGCVAVQASQSEHETHFLADLASKNDFIKGIVG WVDLRADNISDRLRHFSSNKTIKGFRHVVQGEADDFMFREDFRNGISALKEFDFTYDILIFHRQLPAAISLVKDFPNQKF VIDHIAKPDIKSGIIDSWKSGIEEIAKYNNVWCKVSGMVTEADWKNWKPEDLKPYLDVIFENFPTDKILYGSDWPVLNVA SDYNEVVKTLEDYISKFSIEDQNKIWFENAVSFYNLNQ
Sequences:
>Translated_278_residues MNNRIDSHQHFWKFDPVRDSWIDESMSKIQRDFLPEDLLPLLKENKFSGCVAVQASQSEHETHFLADLASKNDFIKGIVG WVDLRADNISDRLRHFSSNKTIKGFRHVVQGEADDFMFREDFRNGISALKEFDFTYDILIFHRQLPAAISLVKDFPNQKF VIDHIAKPDIKSGIIDSWKSGIEEIAKYNNVWCKVSGMVTEADWKNWKPEDLKPYLDVIFENFPTDKILYGSDWPVLNVA SDYNEVVKTLEDYISKFSIEDQNKIWFENAVSFYNLNQ >Mature_278_residues MNNRIDSHQHFWKFDPVRDSWIDESMSKIQRDFLPEDLLPLLKENKFSGCVAVQASQSEHETHFLADLASKNDFIKGIVG WVDLRADNISDRLRHFSSNKTIKGFRHVVQGEADDFMFREDFRNGISALKEFDFTYDILIFHRQLPAAISLVKDFPNQKF VIDHIAKPDIKSGIIDSWKSGIEEIAKYNNVWCKVSGMVTEADWKNWKPEDLKPYLDVIFENFPTDKILYGSDWPVLNVA SDYNEVVKTLEDYISKFSIEDQNKIWFENAVSFYNLNQ
Specific function: Unknown
COG id: COG3618
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006992 [H]
Pfam domain/function: PF04909 Amidohydro_2 [H]
EC number: NA
Molecular weight: Translated: 32486; Mature: 32486
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNRIDSHQHFWKFDPVRDSWIDESMSKIQRDFLPEDLLPLLKENKFSGCVAVQASQSEH CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCH ETHFLADLASKNDFIKGIVGWVDLRADNISDRLRHFSSNKTIKGFRHVVQGEADDFMFRE HHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHH DFRNGISALKEFDFTYDILIFHRQLPAAISLVKDFPNQKFVIDHIAKPDIKSGIIDSWKS HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCHHHHHHHHHHH GIEEIAKYNNVWCKVSGMVTEADWKNWKPEDLKPYLDVIFENFPTDKILYGSDWPVLNVA HHHHHHHHCCEEEEEECEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEECH SDYNEVVKTLEDYISKFSIEDQNKIWFENAVSFYNLNQ HHHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHHCCCC >Mature Secondary Structure MNNRIDSHQHFWKFDPVRDSWIDESMSKIQRDFLPEDLLPLLKENKFSGCVAVQASQSEH CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCH ETHFLADLASKNDFIKGIVGWVDLRADNISDRLRHFSSNKTIKGFRHVVQGEADDFMFRE HHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHH DFRNGISALKEFDFTYDILIFHRQLPAAISLVKDFPNQKFVIDHIAKPDIKSGIIDSWKS HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCHHHHHHHHHHH GIEEIAKYNNVWCKVSGMVTEADWKNWKPEDLKPYLDVIFENFPTDKILYGSDWPVLNVA HHHHHHHHCCEEEEEECEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEECH SDYNEVVKTLEDYISKFSIEDQNKIWFENAVSFYNLNQ HHHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]