Definition Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession NC_009441
Length 6,096,872

Click here to switch to the map view.

The map label for this gene is 146301850

Identifier: 146301850

GI number: 146301850

Start: 4942959

End: 4945457

Strand: Reverse

Name: 146301850

Synonym: Fjoh_4114

Alternate gene names: NA

Gene position: 4945457-4942959 (Counterclockwise)

Preceding gene: 146301853

Following gene: 146301849

Centisome position: 81.11

GC content: 37.41

Gene sequence:

>2499_bases
ATGCGTTTAATTCCTTTCAACAAATTACTGATTGTTTTTTTAATGGTATTCACACTTTCGGCAAGTGGCGCTGAAATTTG
GGTTTCGCCATCAGGAAAAGATTCAAACCTCGGAACAAAATCAAATCCGCTGGCAACAGTTCACATGGCAATGCGAAAAG
CCAGAGAGCTTCGTCGCTTAAAAGATCCGTCGATAAAAGGTGGTATCAGAATCATAGTAATGAACGGAACATATTATTTA
AACGAACCATTATTTGTAAGACCTGAAGATTCTGGAACTGCCGATAGTCCGACAACAATCGAAGCCGATGTAAATGCAAG
ACCCATTATAAGCGGTGGAATTGAAATTAAAAACTGGACAAAATCGACAACGGTTATCAACGGACTTAAAAAAGGTGCTG
TTTGGGTGGCTGATGCTCCTAAAAAAGCTGGAAGTTTGATTGATTACAGACAATTGTGGGTAAATGGCAAAAAAGCTGTA
AGAGCTAAAAATACCGCCGGAACTACAATGGAACGTATTTTATCGTGGAATCATGAAGAACAAACCTGCTGGATTCCGTT
TAAAGATAAATCGGTTAAGTTTGAGCCGGGAATGGAAATGTTTATTGTGCAATGGTGGTCGAATGCTAATCTTCGAATCA
AAAATATCGAAGTTCAAAAAGACAGTGCCAAACTTTCGTTTGAAGAACCAGAAAGCCGTATTCAAAGCGAACACCCATGG
CCTGCACCTTGGATTTCTAAAAATAATGGGAATTCGGCTTATTTCTTAAACAATGCTTTTTCGCTTTTAAACGAGCCTGG
AGAATGGTATTTGGACAAGAAAAATGCTAAAATTTATTATGTTCCGAGAGCTGGAGAAGAGATTAATTCGGCAGTTGTAA
CCGCGCCCGTTTTAGAAAATCTAGTTGAAATAAAAGGGACAATTGATTCGCCTGTACATCATTTTCAATTTAAAGGAATT
TCGTTTCAATATAGCAACTGGCTTCGACCTTCACAGCAAGGTCATGTGCCGTTGCAGTCCGGATTGTATTTGTTAGATGC
TTATAAATTGAAAGTTCCAGGAACGCCAAATCAGGCGAGTTTAGAAAATCAGGCTTGGGTGGGAAGACCTCGCGCAGCAG
TTGAAGTAAATTATGCTAATAATATTCAGTTTGAATCTTGTCGTTTTGAGCATTTGGCTTCGACTGGTTTAGATTTAAAT
AAAGGAACAAATCACAATACTGTAAAAGGAAATTTATTTAAAGATATTGGCGGAAGTGCCATCAACGTTGGAATTTTCTC
TGAAGAAGCTTTTGAAGCGCATTTGCCTTTAATCATAAAAGATGAAAGAGAAATGTGTTCAGATGAAGTGATTTCAGATA
ATTTGATCACCAACGTAACCAATGAAGATTGGGGAACTCTAGGAATCAGCGCTGGTTTTGTTAGAGGCATCACAATTGAA
CACAACGAAATTTCAGATGTTTCATATTCCGGAATGGCAATGGGCTGGGGTTGGACGCATACGCCAAACGTGATGCAGAA
CAATAAAATTCTAGGAAATAAAATTCATCATTATGCGAAACATTTACATGATGTTGCTGGAATTTACACGCTTTCGGCTC
AGCCAGGAAGCCGAATCGAAGAAAATTATATTGACAAAGTTTACAATAGTCCATACGCGCACGATCCGTTTTTATGGCTG
TATTTGTATACTGATGAAGGAAGTGAAGGTTTTACGATTAAAAACAATTGGATTGCGGAAAAGAAAATCCTTAAAAACCA
TAACGGTCCAAAAGGAAATATCTGGGAACACAATGATCCTTATGTAAGCACTAAAATAAAAGATGCAGCCGGAATCAGAG
CGCCATATAAAGATTTAGAAAAAGAAGTTGTAATCGATGAAAAATGGGGATTGCAGGAAATGCCAAAACCGTATGCAATC
GAATTGATAGGTTCTGATTTTGATATCGAAAAAATCAAATCGACATTGACAGGATTTAGAATCGTTGGTCAGGAATTGTA
CCAATGGAAAAATCATTTAGTTATTTACGGAAAGATGAATCAGCCCGAAAGAACAAAGCGAAAACTGGCAGGTGCTTTTC
CTTCTTTAGAAATTAAAATCTATGATGATTTGGTTTACGATTTCCAAAATTTCGAAAGATGTAAAGATTCAAAACCTGCA
TCGGATTGGGAAAATGTGGTTTTAACTGCCAACCTTCCTGCTGATGAAAAACTACAAAAGGAATACGTAGAGTATCATAA
AACACAATTCGAAAAATGGCCGGAAGTTGCAAAAGGCTTCTGTAACGCCGATTTTCAGCAATTGCAGGTTTTCAAAAAAG
ACAGACAATTGATCTTGGTAATCAGTATTCCGAAAGGAGAAAATCTGGATAAATTAAATCCGAAAACAACACAAAATAAT
CCTCGTGTAGACGATTGGAACGCCTTAATGAAAAAATACCAATCTGGAATTGAAGGCGCAAAACCAGACGAAACTTGGAT
TTTCTTGAATAAAGTATAG

Upstream 100 bases:

>100_bases
TTGGTAAAAGTGTTAAAAATACATTTATTTGTAAAAATTATAGCGCTTTTAATTAATGCCTCGTAATTTTATCTCAAGAA
AAAAATCAATACTATAAATA

Downstream 100 bases:

>100_bases
ATTTAAGAATTAAGATTAACGATTGTTGATTTTAGATTTTTCTACATCAACAATCAAAAAAATATAGATTTTTAAGTACA
ATAAATTAACGAGTGTTATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 832; Mature: 832

Protein sequence:

>832_residues
MRLIPFNKLLIVFLMVFTLSASGAEIWVSPSGKDSNLGTKSNPLATVHMAMRKARELRRLKDPSIKGGIRIIVMNGTYYL
NEPLFVRPEDSGTADSPTTIEADVNARPIISGGIEIKNWTKSTTVINGLKKGAVWVADAPKKAGSLIDYRQLWVNGKKAV
RAKNTAGTTMERILSWNHEEQTCWIPFKDKSVKFEPGMEMFIVQWWSNANLRIKNIEVQKDSAKLSFEEPESRIQSEHPW
PAPWISKNNGNSAYFLNNAFSLLNEPGEWYLDKKNAKIYYVPRAGEEINSAVVTAPVLENLVEIKGTIDSPVHHFQFKGI
SFQYSNWLRPSQQGHVPLQSGLYLLDAYKLKVPGTPNQASLENQAWVGRPRAAVEVNYANNIQFESCRFEHLASTGLDLN
KGTNHNTVKGNLFKDIGGSAINVGIFSEEAFEAHLPLIIKDEREMCSDEVISDNLITNVTNEDWGTLGISAGFVRGITIE
HNEISDVSYSGMAMGWGWTHTPNVMQNNKILGNKIHHYAKHLHDVAGIYTLSAQPGSRIEENYIDKVYNSPYAHDPFLWL
YLYTDEGSEGFTIKNNWIAEKKILKNHNGPKGNIWEHNDPYVSTKIKDAAGIRAPYKDLEKEVVIDEKWGLQEMPKPYAI
ELIGSDFDIEKIKSTLTGFRIVGQELYQWKNHLVIYGKMNQPERTKRKLAGAFPSLEIKIYDDLVYDFQNFERCKDSKPA
SDWENVVLTANLPADEKLQKEYVEYHKTQFEKWPEVAKGFCNADFQQLQVFKKDRQLILVISIPKGENLDKLNPKTTQNN
PRVDDWNALMKKYQSGIEGAKPDETWIFLNKV

Sequences:

>Translated_832_residues
MRLIPFNKLLIVFLMVFTLSASGAEIWVSPSGKDSNLGTKSNPLATVHMAMRKARELRRLKDPSIKGGIRIIVMNGTYYL
NEPLFVRPEDSGTADSPTTIEADVNARPIISGGIEIKNWTKSTTVINGLKKGAVWVADAPKKAGSLIDYRQLWVNGKKAV
RAKNTAGTTMERILSWNHEEQTCWIPFKDKSVKFEPGMEMFIVQWWSNANLRIKNIEVQKDSAKLSFEEPESRIQSEHPW
PAPWISKNNGNSAYFLNNAFSLLNEPGEWYLDKKNAKIYYVPRAGEEINSAVVTAPVLENLVEIKGTIDSPVHHFQFKGI
SFQYSNWLRPSQQGHVPLQSGLYLLDAYKLKVPGTPNQASLENQAWVGRPRAAVEVNYANNIQFESCRFEHLASTGLDLN
KGTNHNTVKGNLFKDIGGSAINVGIFSEEAFEAHLPLIIKDEREMCSDEVISDNLITNVTNEDWGTLGISAGFVRGITIE
HNEISDVSYSGMAMGWGWTHTPNVMQNNKILGNKIHHYAKHLHDVAGIYTLSAQPGSRIEENYIDKVYNSPYAHDPFLWL
YLYTDEGSEGFTIKNNWIAEKKILKNHNGPKGNIWEHNDPYVSTKIKDAAGIRAPYKDLEKEVVIDEKWGLQEMPKPYAI
ELIGSDFDIEKIKSTLTGFRIVGQELYQWKNHLVIYGKMNQPERTKRKLAGAFPSLEIKIYDDLVYDFQNFERCKDSKPA
SDWENVVLTANLPADEKLQKEYVEYHKTQFEKWPEVAKGFCNADFQQLQVFKKDRQLILVISIPKGENLDKLNPKTTQNN
PRVDDWNALMKKYQSGIEGAKPDETWIFLNKV
>Mature_832_residues
MRLIPFNKLLIVFLMVFTLSASGAEIWVSPSGKDSNLGTKSNPLATVHMAMRKARELRRLKDPSIKGGIRIIVMNGTYYL
NEPLFVRPEDSGTADSPTTIEADVNARPIISGGIEIKNWTKSTTVINGLKKGAVWVADAPKKAGSLIDYRQLWVNGKKAV
RAKNTAGTTMERILSWNHEEQTCWIPFKDKSVKFEPGMEMFIVQWWSNANLRIKNIEVQKDSAKLSFEEPESRIQSEHPW
PAPWISKNNGNSAYFLNNAFSLLNEPGEWYLDKKNAKIYYVPRAGEEINSAVVTAPVLENLVEIKGTIDSPVHHFQFKGI
SFQYSNWLRPSQQGHVPLQSGLYLLDAYKLKVPGTPNQASLENQAWVGRPRAAVEVNYANNIQFESCRFEHLASTGLDLN
KGTNHNTVKGNLFKDIGGSAINVGIFSEEAFEAHLPLIIKDEREMCSDEVISDNLITNVTNEDWGTLGISAGFVRGITIE
HNEISDVSYSGMAMGWGWTHTPNVMQNNKILGNKIHHYAKHLHDVAGIYTLSAQPGSRIEENYIDKVYNSPYAHDPFLWL
YLYTDEGSEGFTIKNNWIAEKKILKNHNGPKGNIWEHNDPYVSTKIKDAAGIRAPYKDLEKEVVIDEKWGLQEMPKPYAI
ELIGSDFDIEKIKSTLTGFRIVGQELYQWKNHLVIYGKMNQPERTKRKLAGAFPSLEIKIYDDLVYDFQNFERCKDSKPA
SDWENVVLTANLPADEKLQKEYVEYHKTQFEKWPEVAKGFCNADFQQLQVFKKDRQLILVISIPKGENLDKLNPKTTQNN
PRVDDWNALMKKYQSGIEGAKPDETWIFLNKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 94460; Mature: 94460

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLIPFNKLLIVFLMVFTLSASGAEIWVSPSGKDSNLGTKSNPLATVHMAMRKARELRRL
CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KDPSIKGGIRIIVMNGTYYLNEPLFVRPEDSGTADSPTTIEADVNARPIISGGIEIKNWT
CCCCCCCCEEEEEECCEEEECCCEEEECCCCCCCCCCCEEEECCCCCCEEECCEEEECCC
KSTTVINGLKKGAVWVADAPKKAGSLIDYRQLWVNGKKAVRAKNTAGTTMERILSWNHEE
CHHHHHHHHCCCEEEEECCCHHHCCHHHHHHHHCCCCHHEEECCCCCHHHHHHHCCCCCC
QTCWIPFKDKSVKFEPGMEMFIVQWWSNANLRIKNIEVQKDSAKLSFEEPESRIQSEHPW
CEEEEEECCCCEEECCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCHHHHCCCCCC
PAPWISKNNGNSAYFLNNAFSLLNEPGEWYLDKKNAKIYYVPRAGEEINSAVVTAPVLEN
CCCCEECCCCCEEEEECCHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHEEEHHHHHH
LVEIKGTIDSPVHHFQFKGISFQYSNWLRPSQQGHVPLQSGLYLLDAYKLKVPGTPNQAS
HHHHCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCHHHCEEEEEEEEEECCCCCCCCC
LENQAWVGRPRAAVEVNYANNIQFESCRFEHLASTGLDLNKGTNHNTVKGNLFKDIGGSA
CCCCCCCCCCCEEEEEECCCCCEECCHHHHHHHHCCCCCCCCCCCCEEECCHHHHCCCCE
INVGIFSEEAFEAHLPLIIKDEREMCSDEVISDNLITNVTNEDWGTLGISAGFVRGITIE
EEEEEECCCHHHCCCCEEEECCHHHHHHHHHCCCCEECCCCCCCCEEEECCCEEEEEEEE
HNEISDVSYSGMAMGWGWTHTPNVMQNNKILGNKIHHYAKHLHDVAGIYTLSAQPGSRIE
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCHH
ENYIDKVYNSPYAHDPFLWLYLYTDEGSEGFTIKNNWIAEKKILKNHNGPKGNIWEHNDP
HHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCC
YVSTKIKDAAGIRAPYKDLEKEVVIDEKWGLQEMPKPYAIELIGSDFDIEKIKSTLTGFR
EEEEEECCCCCCCCCHHHCCCEEEEECCCCHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
IVGQELYQWKNHLVIYGKMNQPERTKRKLAGAFPSLEIKIYDDLVYDFQNFERCKDSKPA
HHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCCC
SDWENVVLTANLPADEKLQKEYVEYHKTQFEKWPEVAKGFCNADFQQLQVFKKDRQLILV
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEE
ISIPKGENLDKLNPKTTQNNPRVDDWNALMKKYQSGIEGAKPDETWIFLNKV
EECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MRLIPFNKLLIVFLMVFTLSASGAEIWVSPSGKDSNLGTKSNPLATVHMAMRKARELRRL
CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KDPSIKGGIRIIVMNGTYYLNEPLFVRPEDSGTADSPTTIEADVNARPIISGGIEIKNWT
CCCCCCCCEEEEEECCEEEECCCEEEECCCCCCCCCCCEEEECCCCCCEEECCEEEECCC
KSTTVINGLKKGAVWVADAPKKAGSLIDYRQLWVNGKKAVRAKNTAGTTMERILSWNHEE
CHHHHHHHHCCCEEEEECCCHHHCCHHHHHHHHCCCCHHEEECCCCCHHHHHHHCCCCCC
QTCWIPFKDKSVKFEPGMEMFIVQWWSNANLRIKNIEVQKDSAKLSFEEPESRIQSEHPW
CEEEEEECCCCEEECCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCHHHHCCCCCC
PAPWISKNNGNSAYFLNNAFSLLNEPGEWYLDKKNAKIYYVPRAGEEINSAVVTAPVLEN
CCCCEECCCCCEEEEECCHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHEEEHHHHHH
LVEIKGTIDSPVHHFQFKGISFQYSNWLRPSQQGHVPLQSGLYLLDAYKLKVPGTPNQAS
HHHHCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCHHHCEEEEEEEEEECCCCCCCCC
LENQAWVGRPRAAVEVNYANNIQFESCRFEHLASTGLDLNKGTNHNTVKGNLFKDIGGSA
CCCCCCCCCCCEEEEEECCCCCEECCHHHHHHHHCCCCCCCCCCCCEEECCHHHHCCCCE
INVGIFSEEAFEAHLPLIIKDEREMCSDEVISDNLITNVTNEDWGTLGISAGFVRGITIE
EEEEEECCCHHHCCCCEEEECCHHHHHHHHHCCCCEECCCCCCCCEEEECCCEEEEEEEE
HNEISDVSYSGMAMGWGWTHTPNVMQNNKILGNKIHHYAKHLHDVAGIYTLSAQPGSRIE
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCHH
ENYIDKVYNSPYAHDPFLWLYLYTDEGSEGFTIKNNWIAEKKILKNHNGPKGNIWEHNDP
HHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCC
YVSTKIKDAAGIRAPYKDLEKEVVIDEKWGLQEMPKPYAIELIGSDFDIEKIKSTLTGFR
EEEEEECCCCCCCCCHHHCCCEEEEECCCCHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
IVGQELYQWKNHLVIYGKMNQPERTKRKLAGAFPSLEIKIYDDLVYDFQNFERCKDSKPA
HHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCCC
SDWENVVLTANLPADEKLQKEYVEYHKTQFEKWPEVAKGFCNADFQQLQVFKKDRQLILV
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEE
ISIPKGENLDKLNPKTTQNNPRVDDWNALMKKYQSGIEGAKPDETWIFLNKV
EECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA