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The map label for this gene is psd [H]

Identifier: 146301844

GI number: 146301844

Start: 4936913

End: 4938283

Strand: Direct

Name: psd [H]

Synonym: Fjoh_4108

Alternate gene names: 146301844

Gene position: 4936913-4938283 (Clockwise)

Preceding gene: 146301843

Following gene: 146301845

Centisome position: 80.97

GC content: 37.86

Gene sequence:

>1371_bases
ATGGAAACAACACAATTTATAACAGCAAAACAATTATTGGGAGGCTGGTTGCCACAAAACCCACAAATTGTAGAAGATTG
GATTGTAAAAATCAAAAAACTGACTAAAAAAAATCCAACACCACTTATTCCTGAAATTGCCGAATTTCAAAATCTAGTGT
ATTCAGATCCTGTTTTGTATGCGAATGTGCAGGGAATGTTTGCCGAAGCTTATTTCTTAAAACAAAGAACCCCTCTACTT
TGGGAACCAGAACCAATGACTTTTGAGGATTTTCTTGTTTTACTAAACGGAATCATGCAAACCGCTCCCGAAGCCTACCA
AACTGGCGCTCCTGGAAATCAAACGCCTGCAGGTATGATTGGTTTTCCTATTAATGCTCTTTTGGCTTGGCCAATGGCTA
CCAATTTCGGTTATGATGTTTTTTCAAATGCTTTAGTCAATCAACAGCTAAAAAAAATATTAAACTACTGGTCTAAATTT
TTGGTTACAGAAGATTCTCGCTATGTTTTAATAGAAAATGATCCTTCTGAGAATGTAATTGCTTGGTTGAGCGAAGTGGC
ACAATCAGAAATGATGCAGGTTGCCCAAGGAGCATTAGGTTTAGAATCGAATCCTATTCCGCCTAATGCTACATTTTCTG
ATGTTTTTATTTCAGATCCTTCAGATCCATATTACGGTTTTAAAAGCTGGGATGATTTTTTTACGAGATTATTTTGTCCA
AATGTACGTCCAGTTACTGCACCCAATGATGATTCAATTATTGTAAATGCCTGCGAGTCGGCGCCATTGCAAGTGGCTAA
AAATGTGGCATTGTCAGATCAATTTTGGTTAAAAGGACAGCCATATTCTTTAGAAAACATGATGAATTTTGATGAACTTG
CACCTCAATTTGATGGAGGAACAGTTTATCAGGCTTTTTTGAGTGCCTTGAGTTACCATCGCTGGCACAGTCCTGTAAAC
GGTAAAATTGTAAAAACGGCTGTAATAAATGGTTCTTATTATTTAGAAAATTTATATCAGGGTTTCTACAATCCAGCAGG
AGCCGATTCGAGTGCACCTAACAATTCACAGCCCTTTTTAACAGCAGTTGCCACCAGAGCTGTTATATTTATTGAAGCAG
ATAATCCAGCCATTGGACTTATGTGTGTAATACCTGTGGGTATGGCAGAGGTTTCGAGCTGTCAAATAACAGTAAAAGCC
GGCGACGTTGTAAAAAAAGGCGACGAACTGGGTATGTTTCATTTTGGAGGCTCAACACATTGTTTGCTTTTTAGACCGGG
TGTAAATTTAGATTTCACTACTTATGAAACACCAGGCTTAGACGCTCCTAATAACATTCGTGTAAACACACAAATTGCAA
AAGTGCTTTAA

Upstream 100 bases:

>100_bases
ATATGAGAGCTTCATAACACAAAAAAGTCCTTCTATAACTAATTAATGTTTTTGAATTATTTTCCAAAATACCTTCGTTA
TAAATTTAACCCAAAAGACC

Downstream 100 bases:

>100_bases
AAGGCATTTTACTTTCATAAAAAAAACACTCTGTTTTCTAAATTGAAAAGCTAGGTGTTTTTTTATTTTATTTCAATTTC
ATTATTGGTTGTAATAATGA

Product: phosphatidylserine decarboxylase-lke protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
METTQFITAKQLLGGWLPQNPQIVEDWIVKIKKLTKKNPTPLIPEIAEFQNLVYSDPVLYANVQGMFAEAYFLKQRTPLL
WEPEPMTFEDFLVLLNGIMQTAPEAYQTGAPGNQTPAGMIGFPINALLAWPMATNFGYDVFSNALVNQQLKKILNYWSKF
LVTEDSRYVLIENDPSENVIAWLSEVAQSEMMQVAQGALGLESNPIPPNATFSDVFISDPSDPYYGFKSWDDFFTRLFCP
NVRPVTAPNDDSIIVNACESAPLQVAKNVALSDQFWLKGQPYSLENMMNFDELAPQFDGGTVYQAFLSALSYHRWHSPVN
GKIVKTAVINGSYYLENLYQGFYNPAGADSSAPNNSQPFLTAVATRAVIFIEADNPAIGLMCVIPVGMAEVSSCQITVKA
GDVVKKGDELGMFHFGGSTHCLLFRPGVNLDFTTYETPGLDAPNNIRVNTQIAKVL

Sequences:

>Translated_456_residues
METTQFITAKQLLGGWLPQNPQIVEDWIVKIKKLTKKNPTPLIPEIAEFQNLVYSDPVLYANVQGMFAEAYFLKQRTPLL
WEPEPMTFEDFLVLLNGIMQTAPEAYQTGAPGNQTPAGMIGFPINALLAWPMATNFGYDVFSNALVNQQLKKILNYWSKF
LVTEDSRYVLIENDPSENVIAWLSEVAQSEMMQVAQGALGLESNPIPPNATFSDVFISDPSDPYYGFKSWDDFFTRLFCP
NVRPVTAPNDDSIIVNACESAPLQVAKNVALSDQFWLKGQPYSLENMMNFDELAPQFDGGTVYQAFLSALSYHRWHSPVN
GKIVKTAVINGSYYLENLYQGFYNPAGADSSAPNNSQPFLTAVATRAVIFIEADNPAIGLMCVIPVGMAEVSSCQITVKA
GDVVKKGDELGMFHFGGSTHCLLFRPGVNLDFTTYETPGLDAPNNIRVNTQIAKVL
>Mature_456_residues
METTQFITAKQLLGGWLPQNPQIVEDWIVKIKKLTKKNPTPLIPEIAEFQNLVYSDPVLYANVQGMFAEAYFLKQRTPLL
WEPEPMTFEDFLVLLNGIMQTAPEAYQTGAPGNQTPAGMIGFPINALLAWPMATNFGYDVFSNALVNQQLKKILNYWSKF
LVTEDSRYVLIENDPSENVIAWLSEVAQSEMMQVAQGALGLESNPIPPNATFSDVFISDPSDPYYGFKSWDDFFTRLFCP
NVRPVTAPNDDSIIVNACESAPLQVAKNVALSDQFWLKGQPYSLENMMNFDELAPQFDGGTVYQAFLSALSYHRWHSPVN
GKIVKTAVINGSYYLENLYQGFYNPAGADSSAPNNSQPFLTAVATRAVIFIEADNPAIGLMCVIPVGMAEVSSCQITVKA
GDVVKKGDELGMFHFGGSTHCLLFRPGVNLDFTTYETPGLDAPNNIRVNTQIAKVL

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6321609, Length=215, Percent_Identity=30.6976744186047, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 50524; Mature: 50524

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METTQFITAKQLLGGWLPQNPQIVEDWIVKIKKLTKKNPTPLIPEIAEFQNLVYSDPVLY
CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEE
ANVQGMFAEAYFLKQRTPLLWEPEPMTFEDFLVLLNGIMQTAPEAYQTGAPGNQTPAGMI
EECCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCEE
GFPINALLAWPMATNFGYDVFSNALVNQQLKKILNYWSKFLVTEDSRYVLIENDPSENVI
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCHHHH
AWLSEVAQSEMMQVAQGALGLESNPIPPNATFSDVFISDPSDPYYGFKSWDDFFTRLFCP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCC
NVRPVTAPNDDSIIVNACESAPLQVAKNVALSDQFWLKGQPYSLENMMNFDELAPQFDGG
CCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCEEECCCCCCHHHHCCHHHHCCCCCCC
TVYQAFLSALSYHRWHSPVNGKIVKTAVINGSYYLENLYQGFYNPAGADSSAPNNSQPFL
HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
TAVATRAVIFIEADNPAIGLMCVIPVGMAEVSSCQITVKAGDVVKKGDELGMFHFGGSTH
EEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEECCCHHHCCCCEEEEEECCCEE
CLLFRPGVNLDFTTYETPGLDAPNNIRVNTQIAKVL
EEEECCCCCEEEEECCCCCCCCCCCEEEEHHHHHCC
>Mature Secondary Structure
METTQFITAKQLLGGWLPQNPQIVEDWIVKIKKLTKKNPTPLIPEIAEFQNLVYSDPVLY
CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEE
ANVQGMFAEAYFLKQRTPLLWEPEPMTFEDFLVLLNGIMQTAPEAYQTGAPGNQTPAGMI
EECCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCEE
GFPINALLAWPMATNFGYDVFSNALVNQQLKKILNYWSKFLVTEDSRYVLIENDPSENVI
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCHHHH
AWLSEVAQSEMMQVAQGALGLESNPIPPNATFSDVFISDPSDPYYGFKSWDDFFTRLFCP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCC
NVRPVTAPNDDSIIVNACESAPLQVAKNVALSDQFWLKGQPYSLENMMNFDELAPQFDGG
CCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCEEECCCCCCHHHHCCHHHHCCCCCCC
TVYQAFLSALSYHRWHSPVNGKIVKTAVINGSYYLENLYQGFYNPAGADSSAPNNSQPFL
HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
TAVATRAVIFIEADNPAIGLMCVIPVGMAEVSSCQITVKAGDVVKKGDELGMFHFGGSTH
EEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEECCCHHHCCCCEEEEEECCCEE
CLLFRPGVNLDFTTYETPGLDAPNNIRVNTQIAKVL
EEEECCCCCEEEEECCCCCCCCCCCEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11889109 [H]