| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301812
Identifier: 146301812
GI number: 146301812
Start: 4872031
End: 4874784
Strand: Reverse
Name: 146301812
Synonym: Fjoh_4076
Alternate gene names: NA
Gene position: 4874784-4872031 (Counterclockwise)
Preceding gene: 146301813
Following gene: 146301811
Centisome position: 79.96
GC content: 36.35
Gene sequence:
>2754_bases ATGAATACCCAAAAACAGCATACTATGAAATATTTACAATTACTTTTTTTATGTCTTTACGTCTCTTTCGCGACAGCGCA GAACATCACAGTTGTGAGTGATCCGAGTTCGCCGAGAGCAAAATTTGGAGCAGAGAAATTATCAGAAACCCTTTCAGCAA AAGGATTCAGCGTAACTTCTTCTGATAAATTCAAAAAATCAAAAGATAAAGTAATTGTAATTGGAGAAAAAGGAACCGAT TTCTGGAAGAAAAATGCTAAAAGCGCTAAAATCGATGATAGCAAATTAACCAAGAAAGAAGGTTTCCAGATTCGCACTCA AAATAATATAATTTATATTGAAGGAACAGATGCAAGCGGAGCTTTGTATGGCGCTTTAGAATTAACAGATAAAATTAAAG CTTCAGGAAAACTTCCTTCAGAAATCAATATTGATGATAGCCCAGAAATGGTTTTGAGAGGAGCTTGCATCGGAATGCAG AAACCGGTTTATCTCCCAGGTCGTGATGTTTACGAATATCCATATACGCCAGAAACTTTCCCGTGGTTTTACGATAAAGC TTTATGGGTAAAATATTTAGATATGCTGGTAGAAAACCGCATGAACTCTTTGTATTTATGGAACGGACATCCATTTGCTT CTTTGGTGAAACTAAAAGAATATCCGTTTGCAGTTGAAGTGAGTGATGAAGATTTCAAAAAGAACGAAGAAATCTATAAA TTCTTAACAGTTGAAGCCAACAAACGTGGAATCTGGGTAATTCAGATGTTTTATAACATTATTGTTTCTAAGCCTTTTGC AGAGCATTACAACATTAAAACACAAGATCGTTCAAGACCAATCACGCCATTATTGTCTGATTATACTAGAAAATCTATTG CAGCTTTTATCGAAAAATATCCAAATGTTGGATTAATGGTTTGTTTGGGAGAAGCAATCAATACCGTTGATGATGATGTA GAATGGTTCACCAAAACTATTATTCCGGGTGTTCGTGACGGTTTACAAGCATTAGGAAAAACAGAAGAACCACCAATTAT TCTTCGTTCTCATGATACAGATGGGCCTTTAGTAATGGAAAAATCACTTCCGTTATACAAAAACTTATATACAGAAAGTA AATATACAGGAGAATCTTTAACGACTTATACGCCGGGAGGTCCTTGGGGAGAAACGCACAAACAATTAAGCGCTTTAAAA TCAATTCACATTGAGAACGTTCATATTTTGGCTAATTTAGAACCTTTCAGATACGGTTCACCAGACTTTATTCAGAAAAC GGTAAAAGCAATGCATAGCGTTCACGGAGCAAATGCACTGCATTTATATCCGCAAGCTTCGTATTGGGATTGGCCATATT CGGCAGATAAAACGAAATCAGGAGAACGTTTATTAGAAATGGATCGTGACTGGATTTGGTACAAAGCTTGGGCAAGATAT GCTTGGGACAGCAAAAGAGATAGAAATGAAGAAGTTAAATTTTGGGATAATGATTTAGCTGCAAAATTCGGAACGAGTCA GGAAGCTGCAAATAACATTTTAAAAGCTTACGAAGAAACAGGAGAAATTGCTCCAAAAACATTAAGACGTTTCGGAATTA CAGAAGGTAACCGTCAGACTTTATTGTTGGGAATGTTTGAAAGTCAGTTGGTCAATCCGTCAAAATGGAGAGTTTATCCA GGATTCCACGAATCATGCGGACCAGCGGGCGAATTGCTTTTAGAATATGCTAAAAAAGAGTGGAACAAAGAACCGCATTC GGGCGAACTTCCAACGCAGATTATTGCTGAAATTACAGAACACGGAAGATTAGCTGTTGAAGCAATCGACAAAGCTGAAG CAAGTGTAACCAAAGACAAAGAAGAATTTGAACGTCTTAAAAATGATATGCATGCGTATAAGGCTTTCGCCGATTTTTTC TCAGAAAAAGTAAAAGCAGCTTTATTGGTTTTAAGATACAGTTATTCAAATGATATTACAGATTTAGATAAAGCTTTGCC TCATTTAGAAAAGAGCATTGAGTACTATGAGTTATTGGTAAAACTAACAAAAGATACGTACTATTATGCTAACAGTATGC AGACTGCTCAACGCCGAATCCCGATTGGAGGAGACGACGGAAACAACAAAACTTGGGCAGAATTGTTACCGCATTACGAG CGTGAATTGGCTAATTTCAAAAGAAATCTAGAGAAACTAAAATCTTCAAAAGATGGTAAAATAGAAACTAAAGAAGGAAA ACCTTGGAAACCAGCCGAAGTAACTTTTATAGATGAAAAACCGGGAACGTATCTAGTTAAAACAGGGACAAAAGTGTACG GAACAGATATTTCTGAATTGACTAAAGTTGCTCCAGAACTTCAGAATTTAAGAGGTTATTCTTTTGTTGAAAACGATCAA AACGAAAAAGGAACACATTTGAAGTTTAGAAATACAAAAGCGGTTAAATTAGTGGTAGGATATTTTAATTCTGATCAGAA GCGATTTTTATTGCCGCCAAGTTTGGAGACAGATGCAGCAGGAAATGCGCACGGTCAAGCTGAAGTAATTCTGGCAAGTG CAATGAATTTAAAAGATTTACCTCGTGTAAACATTCATACCTATACGTTCCAGCCGGGAGAGAATAAATTAGATTTAGGA AAAGGAAAAGTATTGATTTTAGGTTTCATCGACGCAGATCAAACTATAACACCACGTGATGTTGGATATATCGATGCAGG AGAAAAAGCAGCAATTGACTGGTTGTTTTATTAG
Upstream 100 bases:
>100_bases TTAAACAACACAATTTTTCACTATAAATCTGCCGAATTTGCTAAATCTGCGAGAGATATTTTTCACGCAGATCAGGCAGA TTTAGCAGATTATTTTTAGA
Downstream 100 bases:
>100_bases TTTGCATTCCTGCAAGGTTTTGAAAACCTTGTGGGTATTCTAAATGAACGTTAAAAATAAACCTACAAGGTTTTCAAAAC CTTGCAGGAAATAGAAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 917; Mature: 917
Protein sequence:
>917_residues MNTQKQHTMKYLQLLFLCLYVSFATAQNITVVSDPSSPRAKFGAEKLSETLSAKGFSVTSSDKFKKSKDKVIVIGEKGTD FWKKNAKSAKIDDSKLTKKEGFQIRTQNNIIYIEGTDASGALYGALELTDKIKASGKLPSEINIDDSPEMVLRGACIGMQ KPVYLPGRDVYEYPYTPETFPWFYDKALWVKYLDMLVENRMNSLYLWNGHPFASLVKLKEYPFAVEVSDEDFKKNEEIYK FLTVEANKRGIWVIQMFYNIIVSKPFAEHYNIKTQDRSRPITPLLSDYTRKSIAAFIEKYPNVGLMVCLGEAINTVDDDV EWFTKTIIPGVRDGLQALGKTEEPPIILRSHDTDGPLVMEKSLPLYKNLYTESKYTGESLTTYTPGGPWGETHKQLSALK SIHIENVHILANLEPFRYGSPDFIQKTVKAMHSVHGANALHLYPQASYWDWPYSADKTKSGERLLEMDRDWIWYKAWARY AWDSKRDRNEEVKFWDNDLAAKFGTSQEAANNILKAYEETGEIAPKTLRRFGITEGNRQTLLLGMFESQLVNPSKWRVYP GFHESCGPAGELLLEYAKKEWNKEPHSGELPTQIIAEITEHGRLAVEAIDKAEASVTKDKEEFERLKNDMHAYKAFADFF SEKVKAALLVLRYSYSNDITDLDKALPHLEKSIEYYELLVKLTKDTYYYANSMQTAQRRIPIGGDDGNNKTWAELLPHYE RELANFKRNLEKLKSSKDGKIETKEGKPWKPAEVTFIDEKPGTYLVKTGTKVYGTDISELTKVAPELQNLRGYSFVENDQ NEKGTHLKFRNTKAVKLVVGYFNSDQKRFLLPPSLETDAAGNAHGQAEVILASAMNLKDLPRVNIHTYTFQPGENKLDLG KGKVLILGFIDADQTITPRDVGYIDAGEKAAIDWLFY
Sequences:
>Translated_917_residues MNTQKQHTMKYLQLLFLCLYVSFATAQNITVVSDPSSPRAKFGAEKLSETLSAKGFSVTSSDKFKKSKDKVIVIGEKGTD FWKKNAKSAKIDDSKLTKKEGFQIRTQNNIIYIEGTDASGALYGALELTDKIKASGKLPSEINIDDSPEMVLRGACIGMQ KPVYLPGRDVYEYPYTPETFPWFYDKALWVKYLDMLVENRMNSLYLWNGHPFASLVKLKEYPFAVEVSDEDFKKNEEIYK FLTVEANKRGIWVIQMFYNIIVSKPFAEHYNIKTQDRSRPITPLLSDYTRKSIAAFIEKYPNVGLMVCLGEAINTVDDDV EWFTKTIIPGVRDGLQALGKTEEPPIILRSHDTDGPLVMEKSLPLYKNLYTESKYTGESLTTYTPGGPWGETHKQLSALK SIHIENVHILANLEPFRYGSPDFIQKTVKAMHSVHGANALHLYPQASYWDWPYSADKTKSGERLLEMDRDWIWYKAWARY AWDSKRDRNEEVKFWDNDLAAKFGTSQEAANNILKAYEETGEIAPKTLRRFGITEGNRQTLLLGMFESQLVNPSKWRVYP GFHESCGPAGELLLEYAKKEWNKEPHSGELPTQIIAEITEHGRLAVEAIDKAEASVTKDKEEFERLKNDMHAYKAFADFF SEKVKAALLVLRYSYSNDITDLDKALPHLEKSIEYYELLVKLTKDTYYYANSMQTAQRRIPIGGDDGNNKTWAELLPHYE RELANFKRNLEKLKSSKDGKIETKEGKPWKPAEVTFIDEKPGTYLVKTGTKVYGTDISELTKVAPELQNLRGYSFVENDQ NEKGTHLKFRNTKAVKLVVGYFNSDQKRFLLPPSLETDAAGNAHGQAEVILASAMNLKDLPRVNIHTYTFQPGENKLDLG KGKVLILGFIDADQTITPRDVGYIDAGEKAAIDWLFY >Mature_917_residues MNTQKQHTMKYLQLLFLCLYVSFATAQNITVVSDPSSPRAKFGAEKLSETLSAKGFSVTSSDKFKKSKDKVIVIGEKGTD FWKKNAKSAKIDDSKLTKKEGFQIRTQNNIIYIEGTDASGALYGALELTDKIKASGKLPSEINIDDSPEMVLRGACIGMQ KPVYLPGRDVYEYPYTPETFPWFYDKALWVKYLDMLVENRMNSLYLWNGHPFASLVKLKEYPFAVEVSDEDFKKNEEIYK FLTVEANKRGIWVIQMFYNIIVSKPFAEHYNIKTQDRSRPITPLLSDYTRKSIAAFIEKYPNVGLMVCLGEAINTVDDDV EWFTKTIIPGVRDGLQALGKTEEPPIILRSHDTDGPLVMEKSLPLYKNLYTESKYTGESLTTYTPGGPWGETHKQLSALK SIHIENVHILANLEPFRYGSPDFIQKTVKAMHSVHGANALHLYPQASYWDWPYSADKTKSGERLLEMDRDWIWYKAWARY AWDSKRDRNEEVKFWDNDLAAKFGTSQEAANNILKAYEETGEIAPKTLRRFGITEGNRQTLLLGMFESQLVNPSKWRVYP GFHESCGPAGELLLEYAKKEWNKEPHSGELPTQIIAEITEHGRLAVEAIDKAEASVTKDKEEFERLKNDMHAYKAFADFF SEKVKAALLVLRYSYSNDITDLDKALPHLEKSIEYYELLVKLTKDTYYYANSMQTAQRRIPIGGDDGNNKTWAELLPHYE RELANFKRNLEKLKSSKDGKIETKEGKPWKPAEVTFIDEKPGTYLVKTGTKVYGTDISELTKVAPELQNLRGYSFVENDQ NEKGTHLKFRNTKAVKLVVGYFNSDQKRFLLPPSLETDAAGNAHGQAEVILASAMNLKDLPRVNIHTYTFQPGENKLDLG KGKVLILGFIDADQTITPRDVGYIDAGEKAAIDWLFY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104463; Mature: 104463
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTQKQHTMKYLQLLFLCLYVSFATAQNITVVSDPSSPRAKFGAEKLSETLSAKGFSVTS CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCHHHHHHHHHCCCCEECC SDKFKKSKDKVIVIGEKGTDFWKKNAKSAKIDDSKLTKKEGFQIRTQNNIIYIEGTDASG CHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCEEEECCCEEEEECCCCCC ALYGALELTDKIKASGKLPSEINIDDSPEMVLRGACIGMQKPVYLPGRDVYEYPYTPETF CEEEEEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCC PWFYDKALWVKYLDMLVENRMNSLYLWNGHPFASLVKLKEYPFAVEVSDEDFKKNEEIYK CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCEEEEECCHHHHCCCCEEE FLTVEANKRGIWVIQMFYNIIVSKPFAEHYNIKTQDRSRPITPLLSDYTRKSIAAFIEKY EEEEECCCCCEEHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC PNVGLMVCLGEAINTVDDDVEWFTKTIIPGVRDGLQALGKTEEPPIILRSHDTDGPLVME CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEE KSLPLYKNLYTESKYTGESLTTYTPGGPWGETHKQLSALKSIHIENVHILANLEPFRYGS CCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC PDFIQKTVKAMHSVHGANALHLYPQASYWDWPYSADKTKSGERLLEMDRDWIWYKAWARY HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCEEHHHHHHHH AWDSKRDRNEEVKFWDNDLAAKFGTSQEAANNILKAYEETGEIAPKTLRRFGITEGNRQT HCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCE LLLGMFESQLVNPSKWRVYPGFHESCGPAGELLLEYAKKEWNKEPHSGELPTQIIAEITE EEEEEHHHHCCCCCCEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH HGRLAVEAIDKAEASVTKDKEEFERLKNDMHAYKAFADFFSEKVKAALLVLRYSYSNDIT CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCH DLDKALPHLEKSIEYYELLVKLTKDTYYYANSMQTAQRRIPIGGDDGNNKTWAELLPHYE HHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHHH RELANFKRNLEKLKSSKDGKIETKEGKPWKPAEVTFIDEKPGTYLVKTGTKVYGTDISEL HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEECCCCEEEEECCCEEECCCHHHH TKVAPELQNLRGYSFVENDQNEKGTHLKFRNTKAVKLVVGYFNSDQKRFLLPPSLETDAA HHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCEEEEEEEEECCCCCEEECCCCCCCCCC GNAHGQAEVILASAMNLKDLPRVNIHTYTFQPGENKLDLGKGKVLILGFIDADQTITPRD CCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCEECCCCCEEEEEEECCCCCCCCCC VGYIDAGEKAAIDWLFY CCEECCCCCCCEEEEEC >Mature Secondary Structure MNTQKQHTMKYLQLLFLCLYVSFATAQNITVVSDPSSPRAKFGAEKLSETLSAKGFSVTS CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCHHHHHHHHHCCCCEECC SDKFKKSKDKVIVIGEKGTDFWKKNAKSAKIDDSKLTKKEGFQIRTQNNIIYIEGTDASG CHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCEEEECCCEEEEECCCCCC ALYGALELTDKIKASGKLPSEINIDDSPEMVLRGACIGMQKPVYLPGRDVYEYPYTPETF CEEEEEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCC PWFYDKALWVKYLDMLVENRMNSLYLWNGHPFASLVKLKEYPFAVEVSDEDFKKNEEIYK CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCEEEEECCHHHHCCCCEEE FLTVEANKRGIWVIQMFYNIIVSKPFAEHYNIKTQDRSRPITPLLSDYTRKSIAAFIEKY EEEEECCCCCEEHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC PNVGLMVCLGEAINTVDDDVEWFTKTIIPGVRDGLQALGKTEEPPIILRSHDTDGPLVME CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEE KSLPLYKNLYTESKYTGESLTTYTPGGPWGETHKQLSALKSIHIENVHILANLEPFRYGS CCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC PDFIQKTVKAMHSVHGANALHLYPQASYWDWPYSADKTKSGERLLEMDRDWIWYKAWARY HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCEEHHHHHHHH AWDSKRDRNEEVKFWDNDLAAKFGTSQEAANNILKAYEETGEIAPKTLRRFGITEGNRQT HCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCE LLLGMFESQLVNPSKWRVYPGFHESCGPAGELLLEYAKKEWNKEPHSGELPTQIIAEITE EEEEEHHHHCCCCCCEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH HGRLAVEAIDKAEASVTKDKEEFERLKNDMHAYKAFADFFSEKVKAALLVLRYSYSNDIT CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCH DLDKALPHLEKSIEYYELLVKLTKDTYYYANSMQTAQRRIPIGGDDGNNKTWAELLPHYE HHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHHH RELANFKRNLEKLKSSKDGKIETKEGKPWKPAEVTFIDEKPGTYLVKTGTKVYGTDISEL HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEECCCCEEEEECCCEEECCCHHHH TKVAPELQNLRGYSFVENDQNEKGTHLKFRNTKAVKLVVGYFNSDQKRFLLPPSLETDAA HHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCEEEEEEEEECCCCCEEECCCCCCCCCC GNAHGQAEVILASAMNLKDLPRVNIHTYTFQPGENKLDLGKGKVLILGFIDADQTITPRD CCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCEECCCCCEEEEEEECCCCCCCCCC VGYIDAGEKAAIDWLFY CCEECCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA