| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is cysJ [H]
Identifier: 146301805
GI number: 146301805
Start: 4856434
End: 4858617
Strand: Direct
Name: cysJ [H]
Synonym: Fjoh_4069
Alternate gene names: 146301805
Gene position: 4856434-4858617 (Clockwise)
Preceding gene: 146301804
Following gene: 146301806
Centisome position: 79.65
GC content: 35.81
Gene sequence:
>2184_bases ATGACTCTTTCTTTCTGGCGCTACGCACATTTGGCTCTGGCCTTATTTTCTTCGATATTTCTGCTTTTAGCTTCTGTTAC CGGAATCATTCTCGCAGTCGATGCAGTACAGGAAAAAACACTTCCGTACAAAGCTGCTGATTTTGATAAAATTACTTTAG GAGAAACACTGCCGGTATTAAAAAAAGAATACTCAGAAATCACCGAATTGAGTGTCGATTACAATCAGTTTGTAACACTT CAGGCCATTGATAAAGATGGAAATGATGTGAATGCTTATATTGATCCTAAAACCGGAAAAGCATTAGGAACGCCTGCAAA AAAGAGTGAATTTATTAAATGGGTTACAAGTTTTCATCGTTCGCTGTTTCTTCATGAAACCGGCCGATTCTTTGTTGGCG TAATTTCTTTTTGTTTACTGTTAATTTCAATTTCGGGATTTGTGCTGGTTTTAAAAAGACAAAGAGGCATCCGTAATTTC TTTTCGAAAGTAATTAAAGAATATTTTGCACAATATTATCATGTTGTTTTAGGCCGTCTGGCTTTGATCCCAATTTTGAT TATCGCGCTTACCGGAACTTATTTATCGCTGGAAAGATTTAACTTTTTTATGGGTGAAGAAAAAGCAAAACCGGTAAAAA CAGAACTTTCGGCGGAAGCCAAAAAAACTTCGGTATTTAAAACCACACTCCTGTCTGAAGTAAAGAAAATCGAATTTCCT TTTACAGATGATCCTGAAGAATATTATATCATTGAACTAAAAGACCGCGAAATTGAAGTCAATCAGGTTGACGGCACTTT ACTTTCAGAAAAACGTTCGCCGTTTACTGTTCAGTTATCAGCTTTAAGCCTTGACCTGCATACAGGAAGAATTAATACTG TCTGGGCTGTAATTTTAGCCATTGCGTGTCTCAATATTCTTTTCTTTATTTATTCTGGTTTTGCTATTACTCTAAAACGA AGATCAAGCCGAATTAAAAATAAATTCAAAGCCAATGAAAGCAATTATATTTTGCTGGTTGGTTCTGAAAACGGAAGCTC TTTTCGATTTGCCAATGCTATTGCGAAGCAGTTAATCAGCCATGGAAAAAAAGTTTTTACGGCCGAATTAAATAGTTTTT CGGTTTACCCAAAAGCTGAGCATATTATTGTTTTTTCGTCTACTCATGGTTTAGGTGATCCGCCTTCAAACGCCAGAAAA TTCAAAACCCTTTTACAAAAACAAAATCAGGAACAAAAAATTAAATTTTCGGTTGTTGGTTTTGGATCAAAATCTTATCC TGATTTCTGTCAATTTGCTATTGAAATCGATCAGCTTCTGGAAAATCAAAATTGGGCAGAACGCTTTTTAGATTTACAAA CCGTTAATGATAAATCGGCAGTTGAGTTTACAGAATGGTTGAAATTATGGAGCGGGAAAACCGAAATTCCACTTGCCTGT ACTCCATCTCTGTACAACCATGTTCCAAAAGGTTTACAAAAATTAATGGTTTTAGATAAAACGCCAATTTCAGATACTGA ACATACATTTATTTTAACACTGCACGCCAATAGCCGAACGAAATTTGCTTCGGGCGATTTACTGGCTGTTTATCCTGCCA ATGATTCGAGAGAACGCCTCTACTCTATTGGAAATCATTCCGGAAATGTACAATTGGTTGTAAAACTGCATCAAAATGGA TTAGGTTCTGGATATTTAAATAATCTGGAACCGGGCGATACTATTAAAGCCAGAATTATTAATAATCACGCTTTCCATTT TCCAAAGAAAGCGTCAAAAGTGGCTTTTATTTCTAACGGAACGGGAATTGCTCCTTTTCTTGGAATGATCGAACAAAATA AAGCTAAGAAAGAAATACAGCTTTACAGCGGATTTAGAATGGAAACGCCGACACTGCTGGCTTATAAAAAGTTTGCCAAT ATAATGATCCAAAAAGAATATCTGGATAATTTTCATGTCGCTTTATCACGAGAAGCCGAACAAATTTATGTAATGGATTT GATAAAAAGGGACACAGTCTTTTTTGTTAATTTATTGAAAGACGGCGGTGTAATCATGATTTGCGGTTCACTTGCAATGC AGAAAGATGTCGAAGTGATTCTGGATGAATTGTGTCGTGATAACGGAATGCAAAATCTCGCTGATTACAAGGAAAAAGGA CAAATTTTAACCGATTGTTATTAG
Upstream 100 bases:
>100_bases ATGAAATATTTTTCTGCTTAAACTTAAAATCCGAGCTTTGTCAAAGTTGCAAAACCTTGACAAAGCTTTAAATATTTATT ACATTTCTAGAATACACTAA
Downstream 100 bases:
>100_bases GAGTGCAATTTTAGATTGTTGATTTTAGATTGTTGATTATTGATATTACAAATAGATACTACCAATCACAGAGGGATGAC ATATAGATTAATTGGCAGAT
Product: flavodoxin/nitric oxide synthase
Products: NA
Alternate protein names: SiR-FP [H]
Number of amino acids: Translated: 727; Mature: 726
Protein sequence:
>727_residues MTLSFWRYAHLALALFSSIFLLLASVTGIILAVDAVQEKTLPYKAADFDKITLGETLPVLKKEYSEITELSVDYNQFVTL QAIDKDGNDVNAYIDPKTGKALGTPAKKSEFIKWVTSFHRSLFLHETGRFFVGVISFCLLLISISGFVLVLKRQRGIRNF FSKVIKEYFAQYYHVVLGRLALIPILIIALTGTYLSLERFNFFMGEEKAKPVKTELSAEAKKTSVFKTTLLSEVKKIEFP FTDDPEEYYIIELKDREIEVNQVDGTLLSEKRSPFTVQLSALSLDLHTGRINTVWAVILAIACLNILFFIYSGFAITLKR RSSRIKNKFKANESNYILLVGSENGSSFRFANAIAKQLISHGKKVFTAELNSFSVYPKAEHIIVFSSTHGLGDPPSNARK FKTLLQKQNQEQKIKFSVVGFGSKSYPDFCQFAIEIDQLLENQNWAERFLDLQTVNDKSAVEFTEWLKLWSGKTEIPLAC TPSLYNHVPKGLQKLMVLDKTPISDTEHTFILTLHANSRTKFASGDLLAVYPANDSRERLYSIGNHSGNVQLVVKLHQNG LGSGYLNNLEPGDTIKARIINNHAFHFPKKASKVAFISNGTGIAPFLGMIEQNKAKKEIQLYSGFRMETPTLLAYKKFAN IMIQKEYLDNFHVALSREAEQIYVMDLIKRDTVFFVNLLKDGGVIMICGSLAMQKDVEVILDELCRDNGMQNLADYKEKG QILTDCY
Sequences:
>Translated_727_residues MTLSFWRYAHLALALFSSIFLLLASVTGIILAVDAVQEKTLPYKAADFDKITLGETLPVLKKEYSEITELSVDYNQFVTL QAIDKDGNDVNAYIDPKTGKALGTPAKKSEFIKWVTSFHRSLFLHETGRFFVGVISFCLLLISISGFVLVLKRQRGIRNF FSKVIKEYFAQYYHVVLGRLALIPILIIALTGTYLSLERFNFFMGEEKAKPVKTELSAEAKKTSVFKTTLLSEVKKIEFP FTDDPEEYYIIELKDREIEVNQVDGTLLSEKRSPFTVQLSALSLDLHTGRINTVWAVILAIACLNILFFIYSGFAITLKR RSSRIKNKFKANESNYILLVGSENGSSFRFANAIAKQLISHGKKVFTAELNSFSVYPKAEHIIVFSSTHGLGDPPSNARK FKTLLQKQNQEQKIKFSVVGFGSKSYPDFCQFAIEIDQLLENQNWAERFLDLQTVNDKSAVEFTEWLKLWSGKTEIPLAC TPSLYNHVPKGLQKLMVLDKTPISDTEHTFILTLHANSRTKFASGDLLAVYPANDSRERLYSIGNHSGNVQLVVKLHQNG LGSGYLNNLEPGDTIKARIINNHAFHFPKKASKVAFISNGTGIAPFLGMIEQNKAKKEIQLYSGFRMETPTLLAYKKFAN IMIQKEYLDNFHVALSREAEQIYVMDLIKRDTVFFVNLLKDGGVIMICGSLAMQKDVEVILDELCRDNGMQNLADYKEKG QILTDCY >Mature_726_residues TLSFWRYAHLALALFSSIFLLLASVTGIILAVDAVQEKTLPYKAADFDKITLGETLPVLKKEYSEITELSVDYNQFVTLQ AIDKDGNDVNAYIDPKTGKALGTPAKKSEFIKWVTSFHRSLFLHETGRFFVGVISFCLLLISISGFVLVLKRQRGIRNFF SKVIKEYFAQYYHVVLGRLALIPILIIALTGTYLSLERFNFFMGEEKAKPVKTELSAEAKKTSVFKTTLLSEVKKIEFPF TDDPEEYYIIELKDREIEVNQVDGTLLSEKRSPFTVQLSALSLDLHTGRINTVWAVILAIACLNILFFIYSGFAITLKRR SSRIKNKFKANESNYILLVGSENGSSFRFANAIAKQLISHGKKVFTAELNSFSVYPKAEHIIVFSSTHGLGDPPSNARKF KTLLQKQNQEQKIKFSVVGFGSKSYPDFCQFAIEIDQLLENQNWAERFLDLQTVNDKSAVEFTEWLKLWSGKTEIPLACT PSLYNHVPKGLQKLMVLDKTPISDTEHTFILTLHANSRTKFASGDLLAVYPANDSRERLYSIGNHSGNVQLVVKLHQNGL GSGYLNNLEPGDTIKARIINNHAFHFPKKASKVAFISNGTGIAPFLGMIEQNKAKKEIQLYSGFRMETPTLLAYKKFANI MIQKEYLDNFHVALSREAEQIYVMDLIKRDTVFFVNLLKDGGVIMICGSLAMQKDVEVILDELCRDNGMQNLADYKEKGQ ILTDCY
Specific function: Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow f
COG id: COG0369
COG function: function code P; Sulfite reductase, alpha subunit (flavoprotein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 flavodoxin-like domain [H]
Homologues:
Organism=Homo sapiens, GI127139033, Length=270, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010199 - InterPro: IPR003097 - InterPro: IPR017927 - InterPro: IPR001094 - InterPro: IPR008254 - InterPro: IPR001709 - InterPro: IPR023173 - InterPro: IPR001433 - InterPro: IPR017938 [H]
Pfam domain/function: PF00667 FAD_binding_1; PF00258 Flavodoxin_1; PF00175 NAD_binding_1 [H]
EC number: =1.8.1.2 [H]
Molecular weight: Translated: 82131; Mature: 82000
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: PS50902 FLAVODOXIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLSFWRYAHLALALFSSIFLLLASVTGIILAVDAVQEKTLPYKAADFDKITLGETLPVL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHH KKEYSEITELSVDYNQFVTLQAIDKDGNDVNAYIDPKTGKALGTPAKKSEFIKWVTSFHR HHHHHHHHHEECCHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH SLFLHETGRFFVGVISFCLLLISISGFVLVLKRQRGIRNFFSKVIKEYFAQYYHVVLGRL HEEHHHCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALIPILIIALTGTYLSLERFNFFMGEEKAKPVKTELSAEAKKTSVFKTTLLSEVKKIEFP HHHHHHHHHHHCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC FTDDPEEYYIIELKDREIEVNQVDGTLLSEKRSPFTVQLSALSLDLHTGRINTVWAVILA CCCCCCCEEEEEEECCEEEEEECCCHHHHCCCCCEEEEEEEEEEEEECCCHHHHHHHHHH IACLNILFFIYSGFAITLKRRSSRIKNKFKANESNYILLVGSENGSSFRFANAIAKQLIS HHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH HGKKVFTAELNSFSVYPKAEHIIVFSSTHGLGDPPSNARKFKTLLQKQNQEQKIKFSVVG CCCEEEEEECCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEE FGSKSYPDFCQFAIEIDQLLENQNWAERFLDLQTVNDKSAVEFTEWLKLWSGKTEIPLAC CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCHHHHHHHHHHHHCCCCCCCEEE TPSLYNHVPKGLQKLMVLDKTPISDTEHTFILTLHANSRTKFASGDLLAVYPANDSRERL CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEECCCCEEEEECCCCCHHHH YSIGNHSGNVQLVVKLHQNGLGSGYLNNLEPGDTIKARIINNHAFHFPKKASKVAFISNG HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECC TGIAPFLGMIEQNKAKKEIQLYSGFRMETPTLLAYKKFANIMIQKEYLDNFHVALSREAE CCHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEHHHHCCHHEEECCCCH QIYVMDLIKRDTVFFVNLLKDGGVIMICGSLAMQKDVEVILDELCRDNGMQNLADYKEKG HHHHHHHHHCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC QILTDCY CEECCCC >Mature Secondary Structure TLSFWRYAHLALALFSSIFLLLASVTGIILAVDAVQEKTLPYKAADFDKITLGETLPVL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHH KKEYSEITELSVDYNQFVTLQAIDKDGNDVNAYIDPKTGKALGTPAKKSEFIKWVTSFHR HHHHHHHHHEECCHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH SLFLHETGRFFVGVISFCLLLISISGFVLVLKRQRGIRNFFSKVIKEYFAQYYHVVLGRL HEEHHHCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALIPILIIALTGTYLSLERFNFFMGEEKAKPVKTELSAEAKKTSVFKTTLLSEVKKIEFP HHHHHHHHHHHCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC FTDDPEEYYIIELKDREIEVNQVDGTLLSEKRSPFTVQLSALSLDLHTGRINTVWAVILA CCCCCCCEEEEEEECCEEEEEECCCHHHHCCCCCEEEEEEEEEEEEECCCHHHHHHHHHH IACLNILFFIYSGFAITLKRRSSRIKNKFKANESNYILLVGSENGSSFRFANAIAKQLIS HHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH HGKKVFTAELNSFSVYPKAEHIIVFSSTHGLGDPPSNARKFKTLLQKQNQEQKIKFSVVG CCCEEEEEECCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEE FGSKSYPDFCQFAIEIDQLLENQNWAERFLDLQTVNDKSAVEFTEWLKLWSGKTEIPLAC CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCHHHHHHHHHHHHCCCCCCCEEE TPSLYNHVPKGLQKLMVLDKTPISDTEHTFILTLHANSRTKFASGDLLAVYPANDSRERL CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEECCCCEEEEECCCCCHHHH YSIGNHSGNVQLVVKLHQNGLGSGYLNNLEPGDTIKARIINNHAFHFPKKASKVAFISNG HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECC TGIAPFLGMIEQNKAKKEIQLYSGFRMETPTLLAYKKFANIMIQKEYLDNFHVALSREAE CCHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEHHHHCCHHEEECCCCH QIYVMDLIKRDTVFFVNLLKDGGVIMICGSLAMQKDVEVILDELCRDNGMQNLADYKEKG HHHHHHHHHCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC QILTDCY CEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA