| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301767
Identifier: 146301767
GI number: 146301767
Start: 4809850
End: 4810575
Strand: Reverse
Name: 146301767
Synonym: Fjoh_4029
Alternate gene names: NA
Gene position: 4810575-4809850 (Counterclockwise)
Preceding gene: 146301768
Following gene: 146301766
Centisome position: 78.9
GC content: 34.57
Gene sequence:
>726_bases ATGAGTTCAATGCCTAAAATTATTGGTGATTTTATAGAAATGACTTTTACGAACAAAATCTGTAAAGTAAATGTTACGAC AATAGAAACACCAAGTCCAAATATCAAAATAATCAATTTTAAAGGAAATTTTCCGCATATTAAATTTAAACTCGGACAAG CAGTTGTTATACGAATTGACGACACCAATTACCGAAATTATACTCCCAGTAAATGGGACAGTGAAAACGGAACATTTGAA ATCATTTTTCATATTCACCATAACGGACCAGGAAGTGCCTTTATCAATAATCTAAAGCCCAGCGACCAGATTACCGTTGG GATGCCAAGAGGATTTAAGATTTTTAATAATGAAGCCCAATACCATTTCTTTTTTGGAGATGAAACCTGTATCAGCGTTT TTAAGAGTATGAAAGACGAAATTAACCGAACCGAAAATAACTATTTAGGGATTCTGGAATTAGACGAAGTTTCAGCAGAT ATTCCTAAAAAGCTTGGGCTTATTGTAGATATTGTTCCAAAATCAGTCAATAAAGCAGAATGGGCAATAAAATCACTTCA TAATCTGGATACCGAAATCTGGGAATTATGGAAAAAAGGCTGTTTCTATTTAATGGGAAATGCAAAATCAATTCAGGCCT TTCGAAAAGCACTGCGGGAAAAAGGTGTTTCAAATAAAAATATTCACACCCAGCCCTATTGGGCAGAAGGCAAAGTCGGA CTTTGA
Upstream 100 bases:
>100_bases TAAAAAATTCCGCGAATAGTCCAATCATTGCCTTTTATTATTCAATGTCTTTTCAGGCTTTTATCTTCAATTTTGAATTG AATTTTAAAACCTGAAAATT
Downstream 100 bases:
>100_bases TTTATAAAAAATAAAAGCGATCTATTAGGATCGCTTTTTTGTTGAAGTTATTTGATTTGATAATGATAATTTAGGAATGA TAAACCCAACATGCTCCAAA
Product: oxidoreductase FAD-binding subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MSSMPKIIGDFIEMTFTNKICKVNVTTIETPSPNIKIINFKGNFPHIKFKLGQAVVIRIDDTNYRNYTPSKWDSENGTFE IIFHIHHNGPGSAFINNLKPSDQITVGMPRGFKIFNNEAQYHFFFGDETCISVFKSMKDEINRTENNYLGILELDEVSAD IPKKLGLIVDIVPKSVNKAEWAIKSLHNLDTEIWELWKKGCFYLMGNAKSIQAFRKALREKGVSNKNIHTQPYWAEGKVG L
Sequences:
>Translated_241_residues MSSMPKIIGDFIEMTFTNKICKVNVTTIETPSPNIKIINFKGNFPHIKFKLGQAVVIRIDDTNYRNYTPSKWDSENGTFE IIFHIHHNGPGSAFINNLKPSDQITVGMPRGFKIFNNEAQYHFFFGDETCISVFKSMKDEINRTENNYLGILELDEVSAD IPKKLGLIVDIVPKSVNKAEWAIKSLHNLDTEIWELWKKGCFYLMGNAKSIQAFRKALREKGVSNKNIHTQPYWAEGKVG L >Mature_240_residues SSMPKIIGDFIEMTFTNKICKVNVTTIETPSPNIKIINFKGNFPHIKFKLGQAVVIRIDDTNYRNYTPSKWDSENGTFEI IFHIHHNGPGSAFINNLKPSDQITVGMPRGFKIFNNEAQYHFFFGDETCISVFKSMKDEINRTENNYLGILELDEVSADI PKKLGLIVDIVPKSVNKAEWAIKSLHNLDTEIWELWKKGCFYLMGNAKSIQAFRKALREKGVSNKNIHTQPYWAEGKVGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27534; Mature: 27403
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSMPKIIGDFIEMTFTNKICKVNVTTIETPSPNIKIINFKGNFPHIKFKLGQAVVIRID CCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCEEEEEEE DTNYRNYTPSKWDSENGTFEIIFHIHHNGPGSAFINNLKPSDQITVGMPRGFKIFNNEAQ CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHCCCCCCCCCEEEECCCCEEEECCCCE YHFFFGDETCISVFKSMKDEINRTENNYLGILELDEVSADIPKKLGLIVDIVPKSVNKAE EEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHCCEEEEECCCCCCHHH WAIKSLHNLDTEIWELWKKGCFYLMGNAKSIQAFRKALREKGVSNKNIHTQPYWAEGKVG HHHHHHHCCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC L C >Mature Secondary Structure SSMPKIIGDFIEMTFTNKICKVNVTTIETPSPNIKIINFKGNFPHIKFKLGQAVVIRID CCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCEEEEEEE DTNYRNYTPSKWDSENGTFEIIFHIHHNGPGSAFINNLKPSDQITVGMPRGFKIFNNEAQ CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHCCCCCCCCCEEEECCCCEEEECCCCE YHFFFGDETCISVFKSMKDEINRTENNYLGILELDEVSADIPKKLGLIVDIVPKSVNKAE EEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHCCEEEEECCCCCCHHH WAIKSLHNLDTEIWELWKKGCFYLMGNAKSIQAFRKALREKGVSNKNIHTQPYWAEGKVG HHHHHHHCCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC L C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA