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The map label for this gene is araC [C]

Identifier: 146301768

GI number: 146301768

Start: 4810657

End: 4811505

Strand: Reverse

Name: araC [C]

Synonym: Fjoh_4030

Alternate gene names: 146301768

Gene position: 4811505-4810657 (Counterclockwise)

Preceding gene: 146301769

Following gene: 146301767

Centisome position: 78.92

GC content: 34.04

Gene sequence:

>849_bases
TTGAAAAAAATACCAATATATAATCAAAGTCCGGATGCTGTAGGCGGTATTTTTATCGCCTATCATTCTCCCGATGATCT
GGCTGATTTTGAAACCAGATTAGAGGCGCATCGTGATGATTTCTTTATATTTTTTGTACTTACAAACGGTCATGCCGTGC
TTAAATGTGATATGATCGATATAGAAATAAATGCTGGCAATATATTGATGATTAAACCGCTTCAAATTCATCACGGGCAG
GATGGAACACCAGATGCGGCAGGATATTATATTGGCGTTGCACCTTTTCTTATTCCCAATAATTGTCTGGAAGTTTTTCA
AAGTCTGACAGTTTCAGAACAGCTCAATGTAATTGATCCGGTAAAACAAGAAGAACTGTTAAATATCATTCAACTGCTGC
ACCGCTCTTTTACAAGCAGTAATTCAAATAAAACACAAATTATTAACGGACTTTTTAATGCCCTGATTTATCATTTTGCC
AATTTATATGCAGAATCAAAAAGCCCTGTAAAAGAATTTAAAAACCAGTCGGCTGTTATTTATGCTAATTTTAAAAAGCT
AATTACAGATCGTACTTTTCTCGAAAGTCCGTCTTATTTTGCAAAGAAATTAAATATTACTACCTCACATTTAAATGATT
GTGTCAATGCTTCTTCTGGTAAATCTGTTACCTATTGGCTTCAAAATGCGATGATTATCGAAGCACAAAGATTATTGTAT
TATGCAGAAAGTGAAGTAAAAGAAATTGCTTTTGCACTCGGTTTTCAGGATCATACCTATTTTTCGCGTTTATTCAAAAA
AATTACAAAAGAAACCCCGCTTGCTTTTCGTAAAAAATTCCGCGAATAG

Upstream 100 bases:

>100_bases
AAATTACCAATTTAATTTTAATTTAAAAAAAATATAAAAGCGATCTCAAAAGGATCGCTTTTTTGTTGAAATTTGAATAT
TATAAAAAACACCACAACCA

Downstream 100 bases:

>100_bases
TCCAATCATTGCCTTTTATTATTCAATGTCTTTTCAGGCTTTTATCTTCAATTTTGAATTGAATTTTAAAACCTGAAAAT
TATGAGTTCAATGCCTAAAA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC-Family Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Arac Family; AraC Family Regulatory Protein; Transcriptional Regulatory Protein; AraC Family Transcription Regulator; Transcriptional Regulator AraC Family Protein; Regulator Of 4hpa-Hydroxylase Operon; AraC Family Transcription Regulator Protein; Transcriptional Regulator PobR

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MKKIPIYNQSPDAVGGIFIAYHSPDDLADFETRLEAHRDDFFIFFVLTNGHAVLKCDMIDIEINAGNILMIKPLQIHHGQ
DGTPDAAGYYIGVAPFLIPNNCLEVFQSLTVSEQLNVIDPVKQEELLNIIQLLHRSFTSSNSNKTQIINGLFNALIYHFA
NLYAESKSPVKEFKNQSAVIYANFKKLITDRTFLESPSYFAKKLNITTSHLNDCVNASSGKSVTYWLQNAMIIEAQRLLY
YAESEVKEIAFALGFQDHTYFSRLFKKITKETPLAFRKKFRE

Sequences:

>Translated_282_residues
MKKIPIYNQSPDAVGGIFIAYHSPDDLADFETRLEAHRDDFFIFFVLTNGHAVLKCDMIDIEINAGNILMIKPLQIHHGQ
DGTPDAAGYYIGVAPFLIPNNCLEVFQSLTVSEQLNVIDPVKQEELLNIIQLLHRSFTSSNSNKTQIINGLFNALIYHFA
NLYAESKSPVKEFKNQSAVIYANFKKLITDRTFLESPSYFAKKLNITTSHLNDCVNASSGKSVTYWLQNAMIIEAQRLLY
YAESEVKEIAFALGFQDHTYFSRLFKKITKETPLAFRKKFRE
>Mature_282_residues
MKKIPIYNQSPDAVGGIFIAYHSPDDLADFETRLEAHRDDFFIFFVLTNGHAVLKCDMIDIEINAGNILMIKPLQIHHGQ
DGTPDAAGYYIGVAPFLIPNNCLEVFQSLTVSEQLNVIDPVKQEELLNIIQLLHRSFTSSNSNKTQIINGLFNALIYHFA
NLYAESKSPVKEFKNQSAVIYANFKKLITDRTFLESPSYFAKKLNITTSHLNDCVNASSGKSVTYWLQNAMIIEAQRLLY
YAESEVKEIAFALGFQDHTYFSRLFKKITKETPLAFRKKFRE

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32133; Mature: 32133

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIPIYNQSPDAVGGIFIAYHSPDDLADFETRLEAHRDDFFIFFVLTNGHAVLKCDMID
CCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEEE
IEINAGNILMIKPLQIHHGQDGTPDAAGYYIGVAPFLIPNNCLEVFQSLTVSEQLNVIDP
EEECCCCEEEEEEEEEECCCCCCCCCCCEEEECCHHCCCHHHHHHHHHHHHHHCCCCCCC
VKQEELLNIIQLLHRSFTSSNSNKTQIINGLFNALIYHFANLYAESKSPVKEFKNQSAVI
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEE
YANFKKLITDRTFLESPSYFAKKLNITTSHLNDCVNASSGKSVTYWLQNAMIIEAQRLLY
EECHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH
YAESEVKEIAFALGFQDHTYFSRLFKKITKETPLAFRKKFRE
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MKKIPIYNQSPDAVGGIFIAYHSPDDLADFETRLEAHRDDFFIFFVLTNGHAVLKCDMID
CCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEEE
IEINAGNILMIKPLQIHHGQDGTPDAAGYYIGVAPFLIPNNCLEVFQSLTVSEQLNVIDP
EEECCCCEEEEEEEEEECCCCCCCCCCCEEEECCHHCCCHHHHHHHHHHHHHHCCCCCCC
VKQEELLNIIQLLHRSFTSSNSNKTQIINGLFNALIYHFANLYAESKSPVKEFKNQSAVI
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEE
YANFKKLITDRTFLESPSYFAKKLNITTSHLNDCVNASSGKSVTYWLQNAMIIEAQRLLY
EECHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH
YAESEVKEIAFALGFQDHTYFSRLFKKITKETPLAFRKKFRE
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA