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The map label for this gene is oxyR [H]

Identifier: 146301766

GI number: 146301766

Start: 4808560

End: 4809531

Strand: Reverse

Name: oxyR [H]

Synonym: Fjoh_4028

Alternate gene names: 146301766

Gene position: 4809531-4808560 (Counterclockwise)

Preceding gene: 146301767

Following gene: 146301763

Centisome position: 78.89

GC content: 35.7

Gene sequence:

>972_bases
ATGACCATTCAACAGTTAAAATATATTGTAGCTTTAGATGAAGAGCGCCATTTTGCAAGAGCAGCCGAAGTCTGTATGGT
TACACAGCCAGGATTAACAATTCAGTTAAAAAATCTTGAAGAAGAAATAGGAATCAAGATTTTCGACCGAAACAAAGTGC
CTTTAACGCCTACAATTCTTGGTACAGAAATTATCAATAAAGCACGAAAAATTCTTCGTGAAGCTGATGAAATCAGGGAT
TTTGTGGTCAACGAAAAAAATCTTCTCGAAGGAGAATTAAAACTGGGTATTATTTCGACTTTATCTCCGTACCTGATTCC
GTTGTTTATTAAAGCAATGAAAGAAGCTGCGCCAAAAGTACATTTCATCATTAAGGAAGGATATACGGGACATTTAATGA
GAGATTTAGAAATAGGTGCGATTGATGCAGCTATTATGGCGACACCAACAGGAAATCCCAATTTGATCGAACATGTTATT
TTTAAAGAGCCTTTTGTAGCTTATTTGAATGAATCGCACCCAATGGCAAAAGAAGATTTTTATGAACTTCAGCCGGGAGA
CAAAACCGAACTGCTGCTGCTGCATCATGAATATTGTTACAATGCACAGCTTCTGGATATCTGCGGATTAAAATCATCAG
ATAAAATTAAAGAACAATTTACGTATGATATCAATTCAATAGAAACCCTAAAAAATCTCGTTCGCGCGCATTTAGGATTT
GCAATTATACCGCAGCTTTCTATTTTAAACGAAGCAAAATCGGAGCTTTTTAAACCTTTTAAAGAACCTATTCCGGTAAG
AGAAATAAGTTTAGTAGTTTCAGATTCTTTTTCGAAGAAACTCTTACTCGAAAAAATGAACGAAGCCATCTGGAACTGTC
TTCCTGAATCACTCAAAAAAGATTTTGCCTACAGGAAAATCCGCTGGAACGATTCGCCGTATTTTGTAAAAGCGATTAGT
AAAGTTTCTTAA

Upstream 100 bases:

>100_bases
CTTTGTCAAATTTTTTGAACTTTGGCAAAGTTTATTCTCCAATAAAAAAGTAAAAAATCTTAGTACCTTAGCATCTCAGC
ATCTTAGAAACTTAGAAACA

Downstream 100 bases:

>100_bases
ATATCTATTACAATTATCAAGTTTTTTAAACACATAGGAACATAGCTTTTCTTTGTATGTAAAGGCGTTTCACTTGTTTT
AGCACACATAGCTATGTGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MTIQQLKYIVALDEERHFARAAEVCMVTQPGLTIQLKNLEEEIGIKIFDRNKVPLTPTILGTEIINKARKILREADEIRD
FVVNEKNLLEGELKLGIISTLSPYLIPLFIKAMKEAAPKVHFIIKEGYTGHLMRDLEIGAIDAAIMATPTGNPNLIEHVI
FKEPFVAYLNESHPMAKEDFYELQPGDKTELLLLHHEYCYNAQLLDICGLKSSDKIKEQFTYDINSIETLKNLVRAHLGF
AIIPQLSILNEAKSELFKPFKEPIPVREISLVVSDSFSKKLLLEKMNEAIWNCLPESLKKDFAYRKIRWNDSPYFVKAIS
KVS

Sequences:

>Translated_323_residues
MTIQQLKYIVALDEERHFARAAEVCMVTQPGLTIQLKNLEEEIGIKIFDRNKVPLTPTILGTEIINKARKILREADEIRD
FVVNEKNLLEGELKLGIISTLSPYLIPLFIKAMKEAAPKVHFIIKEGYTGHLMRDLEIGAIDAAIMATPTGNPNLIEHVI
FKEPFVAYLNESHPMAKEDFYELQPGDKTELLLLHHEYCYNAQLLDICGLKSSDKIKEQFTYDINSIETLKNLVRAHLGF
AIIPQLSILNEAKSELFKPFKEPIPVREISLVVSDSFSKKLLLEKMNEAIWNCLPESLKKDFAYRKIRWNDSPYFVKAIS
KVS
>Mature_322_residues
TIQQLKYIVALDEERHFARAAEVCMVTQPGLTIQLKNLEEEIGIKIFDRNKVPLTPTILGTEIINKARKILREADEIRDF
VVNEKNLLEGELKLGIISTLSPYLIPLFIKAMKEAAPKVHFIIKEGYTGHLMRDLEIGAIDAAIMATPTGNPNLIEHVIF
KEPFVAYLNESHPMAKEDFYELQPGDKTELLLLHHEYCYNAQLLDICGLKSSDKIKEQFTYDINSIETLKNLVRAHLGFA
IIPQLSILNEAKSELFKPFKEPIPVREISLVVSDSFSKKLLLEKMNEAIWNCLPESLKKDFAYRKIRWNDSPYFVKAISK
VS

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=292, Percent_Identity=31.5068493150685, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI145693105, Length=275, Percent_Identity=25.8181818181818, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787879, Length=287, Percent_Identity=28.2229965156794, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788748, Length=305, Percent_Identity=23.6065573770492, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI157672245, Length=235, Percent_Identity=23.8297872340426, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787530, Length=265, Percent_Identity=24.5283018867925, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI2367136, Length=265, Percent_Identity=24.5283018867925, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788887, Length=270, Percent_Identity=22.962962962963, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788297, Length=263, Percent_Identity=25.4752851711027, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1790208, Length=307, Percent_Identity=22.1498371335505, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788296, Length=180, Percent_Identity=28.3333333333333, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36927; Mature: 36795

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIQQLKYIVALDEERHFARAAEVCMVTQPGLTIQLKNLEEEIGIKIFDRNKVPLTPTIL
CCHHHEEEEEEECCHHHHHHHHHEEEEECCCCEEEEECCHHHCCEEEEECCCCCCCHHHH
GTEIINKARKILREADEIRDFVVNEKNLLEGELKLGIISTLSPYLIPLFIKAMKEAAPKV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHEEHHHHHHHHHHHHHHHHHHHCCCEE
HFIIKEGYTGHLMRDLEIGAIDAAIMATPTGNPNLIEHVIFKEPFVAYLNESHPMAKEDF
EEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCCHHHC
YELQPGDKTELLLLHHEYCYNAQLLDICGLKSSDKIKEQFTYDINSIETLKNLVRAHLGF
EECCCCCCCEEEEEEECHHCCCEEEHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCH
AIIPQLSILNEAKSELFKPFKEPIPVREISLVVSDSFSKKLLLEKMNEAIWNCLPESLKK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
DFAYRKIRWNDSPYFVKAISKVS
HHHHEEEEECCCCHHHHHHHHCC
>Mature Secondary Structure 
TIQQLKYIVALDEERHFARAAEVCMVTQPGLTIQLKNLEEEIGIKIFDRNKVPLTPTIL
CHHHEEEEEEECCHHHHHHHHHEEEEECCCCEEEEECCHHHCCEEEEECCCCCCCHHHH
GTEIINKARKILREADEIRDFVVNEKNLLEGELKLGIISTLSPYLIPLFIKAMKEAAPKV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHEEHHHHHHHHHHHHHHHHHHHCCCEE
HFIIKEGYTGHLMRDLEIGAIDAAIMATPTGNPNLIEHVIFKEPFVAYLNESHPMAKEDF
EEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCCHHHC
YELQPGDKTELLLLHHEYCYNAQLLDICGLKSSDKIKEQFTYDINSIETLKNLVRAHLGF
EECCCCCCCEEEEEEECHHCCCEEEHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCH
AIIPQLSILNEAKSELFKPFKEPIPVREISLVVSDSFSKKLLLEKMNEAIWNCLPESLKK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
DFAYRKIRWNDSPYFVKAISKVS
HHHHEEEEECCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 8890216 [H]