| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is lytS [H]
Identifier: 146301715
GI number: 146301715
Start: 4761850
End: 4763877
Strand: Reverse
Name: lytS [H]
Synonym: Fjoh_3977
Alternate gene names: 146301715
Gene position: 4763877-4761850 (Counterclockwise)
Preceding gene: 146301720
Following gene: 146301714
Centisome position: 78.14
GC content: 35.95
Gene sequence:
>2028_bases ATGCTCCAAAAAATCACAATTGATCTTCAAAATTTCAGAAAACAAAAACGGCTTTTTTATGTTTTGTTTTTGGTTTTAAC TGCATTCAAAATTCAGGCACAAGATATTTCTCCTATCGAAAAAATAGCAGCAGAAGGATATGCAAAACGTTTTTCTGATA CTGTTTCCTGTATAAAAATTCAGAAACAGGCACTTCATCTTGCACACAAGAATAAGAACAAGGAAGACGAAGTAATTAGT TATGCTTATCTGGCGCTTACCCAAAGACGATTGCTTCATTTAAAAGAGTTTATGCATTATGCAGATACGGCTTTTTATCT TTCGCAGCATATAACTAAAATAAGAGCAAAAGCCCATGCATCGGCTGCAATGGGATCTTTAAAATCTTATATTGAAGACA AGCCCCAGGCATTGAATTATTTATTAGAAGCCTATACATTATTTTCTAAAGTCAATGCACACGATCAATGTGCTAAAATT GCTTCGGATATTTCGTATTTGTTTTCTCCGGCATCGCCTACCAAAGTCGAAAAATATGCCAGAGAAGCCCTTGCACATGC AGAAAAATCCGGTGATGCAGAAAGCCAATTGTATGCAAGGCTTGCTTTTGGCGGTTTTTTGGCAGATAATTTAGAAACGG GCGGGATTTTAGAATGGGCAGCGGCGGTTAAGTTTTTTGAAGAAACAGTCGCTTTGGCTGAAAAAAATGCAGACAAAATT GTGAGCAAAAGTAATATTGGAATTGCTTATGTAAATCTGGCTGATCTTTATACAAAAGGACCAAAGCCTATAGATGAAAA AGCTTTTTTGTGGAATCTGCAAAAAGCAGAAAGTATTGCGAAAAAGTATAATGTGAAAATTATTCTGCGAAGTGCCATTG GACTAAAAGGGTATTATTTTATGCAAAAGGGCGATTATATTAGGGCTGAACTTCTTTTTACAGAAGGTATTAATTATCAA AAAAGCCTGCCGTATACAGATAATTATCTTTTTACTGCTTTTTACAAGAGTTTAAAAGATGTTGCGGTAAAGAGAAAAGA TTTTCAGGCGTATTACGGTTACGATACACTTTATTCAAAATATACTCAGTTAAAATATAAGGAATCTACGCAGGCGCTGC TTCAAAATGCAGATGCCCGTTACGAATCTTCTAAAAAAGCAGAAAGAATCAAACAGCTGGAACTGGAAAAAGAACTGGAG CAGAAGAATAAATTATTGGGTTATGGTATTGCGGGCGTATTGTTAATTGGTCTTGTATTTATGTTTCGTTCGTATTATTA CCGCCAGCGTTATTATCAAAACAGAGAAGATTTTCTAAAGCAGGAGCAGGTGCATAACGAACTTAAAATGCAGCTGATGG AAAAGGAAACGATCGAAAATCTGGCTGCGCGATTGTCACTCGAAAGAAGATTGCTGCGTTCGCAGATGGATCCGCATTTC ATTTTTAATGCTTTAGGGAATATCCAAAGCATGATTTTACAAAAAGATACTATTCCTGCGGTTTCGTATTTAAATAAATT TGCCAAGCTCACCAGACAGGTTTTAGAGCAGTCGCGAAAAGAAACCATTTCGCTGGAAGAGGAAATTAATACTTTAAAAA ATTATATCGAATTGCAGCAGCTTCGTTTAAATAATGGTTTTGATTATGTTATTGAATGTGATGAAAATGTTGAAACTGAT ATTTTGATACCGCCTCTGCTCATTCAGCCGTTTATAGAAAATGCGGTCGAACATGGTTTAAAACCTCAGGAAAATAGTGT AAAAGGTTTGATCGAAATTTATTTTAAAGAAGATGAAGAACAGCACAGTTTAATTTGTACGATTAAGGACAACGGAATTG GATTAGCGGCTTCGAGAAAATTAAAAATAAACGATACGCATCAGTCGCTTTCGACTACCATTACTGACGAAAGGCTGTCT AAAATGCAGAAAGAAAACCCAAATGCCGGATTTACGGTTAAGGAACGTGATCCTGAAACTGACGGCCGCGGTTGTATAGT AATTCTAAATATCCCGATTTTATCATGA
Upstream 100 bases:
>100_bases TTAAGAGGTTGTAAGTAAGAGTTTTATCCTTTAAAAACACAGGTAAATTGTTTGGTTTGTATAATGACAATTTGTACTTT GCCGTCAATTACCACTAATT
Downstream 100 bases:
>100_bases TTTATAAAACGATAATTATTGAAGACGAACATCGATTAAGAGAAGCTTTGTCGATTATGCTCGAAATGGTTTCCGGCGAT ACGATTCAAATTGTTGGTTA
Product: signal transduction histidine kinase LytS
Products: NA
Alternate protein names: Autolysin sensor kinase [H]
Number of amino acids: Translated: 675; Mature: 675
Protein sequence:
>675_residues MLQKITIDLQNFRKQKRLFYVLFLVLTAFKIQAQDISPIEKIAAEGYAKRFSDTVSCIKIQKQALHLAHKNKNKEDEVIS YAYLALTQRRLLHLKEFMHYADTAFYLSQHITKIRAKAHASAAMGSLKSYIEDKPQALNYLLEAYTLFSKVNAHDQCAKI ASDISYLFSPASPTKVEKYAREALAHAEKSGDAESQLYARLAFGGFLADNLETGGILEWAAAVKFFEETVALAEKNADKI VSKSNIGIAYVNLADLYTKGPKPIDEKAFLWNLQKAESIAKKYNVKIILRSAIGLKGYYFMQKGDYIRAELLFTEGINYQ KSLPYTDNYLFTAFYKSLKDVAVKRKDFQAYYGYDTLYSKYTQLKYKESTQALLQNADARYESSKKAERIKQLELEKELE QKNKLLGYGIAGVLLIGLVFMFRSYYYRQRYYQNREDFLKQEQVHNELKMQLMEKETIENLAARLSLERRLLRSQMDPHF IFNALGNIQSMILQKDTIPAVSYLNKFAKLTRQVLEQSRKETISLEEEINTLKNYIELQQLRLNNGFDYVIECDENVETD ILIPPLLIQPFIENAVEHGLKPQENSVKGLIEIYFKEDEEQHSLICTIKDNGIGLAASRKLKINDTHQSLSTTITDERLS KMQKENPNAGFTVKERDPETDGRGCIVILNIPILS
Sequences:
>Translated_675_residues MLQKITIDLQNFRKQKRLFYVLFLVLTAFKIQAQDISPIEKIAAEGYAKRFSDTVSCIKIQKQALHLAHKNKNKEDEVIS YAYLALTQRRLLHLKEFMHYADTAFYLSQHITKIRAKAHASAAMGSLKSYIEDKPQALNYLLEAYTLFSKVNAHDQCAKI ASDISYLFSPASPTKVEKYAREALAHAEKSGDAESQLYARLAFGGFLADNLETGGILEWAAAVKFFEETVALAEKNADKI VSKSNIGIAYVNLADLYTKGPKPIDEKAFLWNLQKAESIAKKYNVKIILRSAIGLKGYYFMQKGDYIRAELLFTEGINYQ KSLPYTDNYLFTAFYKSLKDVAVKRKDFQAYYGYDTLYSKYTQLKYKESTQALLQNADARYESSKKAERIKQLELEKELE QKNKLLGYGIAGVLLIGLVFMFRSYYYRQRYYQNREDFLKQEQVHNELKMQLMEKETIENLAARLSLERRLLRSQMDPHF IFNALGNIQSMILQKDTIPAVSYLNKFAKLTRQVLEQSRKETISLEEEINTLKNYIELQQLRLNNGFDYVIECDENVETD ILIPPLLIQPFIENAVEHGLKPQENSVKGLIEIYFKEDEEQHSLICTIKDNGIGLAASRKLKINDTHQSLSTTITDERLS KMQKENPNAGFTVKERDPETDGRGCIVILNIPILS >Mature_675_residues MLQKITIDLQNFRKQKRLFYVLFLVLTAFKIQAQDISPIEKIAAEGYAKRFSDTVSCIKIQKQALHLAHKNKNKEDEVIS YAYLALTQRRLLHLKEFMHYADTAFYLSQHITKIRAKAHASAAMGSLKSYIEDKPQALNYLLEAYTLFSKVNAHDQCAKI ASDISYLFSPASPTKVEKYAREALAHAEKSGDAESQLYARLAFGGFLADNLETGGILEWAAAVKFFEETVALAEKNADKI VSKSNIGIAYVNLADLYTKGPKPIDEKAFLWNLQKAESIAKKYNVKIILRSAIGLKGYYFMQKGDYIRAELLFTEGINYQ KSLPYTDNYLFTAFYKSLKDVAVKRKDFQAYYGYDTLYSKYTQLKYKESTQALLQNADARYESSKKAERIKQLELEKELE QKNKLLGYGIAGVLLIGLVFMFRSYYYRQRYYQNREDFLKQEQVHNELKMQLMEKETIENLAARLSLERRLLRSQMDPHF IFNALGNIQSMILQKDTIPAVSYLNKFAKLTRQVLEQSRKETISLEEEINTLKNYIELQQLRLNNGFDYVIECDENVETD ILIPPLLIQPFIENAVEHGLKPQENSVKGLIEIYFKEDEEQHSLICTIKDNGIGLAASRKLKINDTHQSLSTTITDERLS KMQKENPNAGFTVKERDPETDGRGCIVILNIPILS
Specific function: Member of the two-component regulatory system lytR/lytS that probably regulates genes involved in cell wall metabolism [H]
COG id: COG2972
COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1788723, Length=149, Percent_Identity=34.2281879194631, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR010559 - InterPro: IPR011620 [H]
Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 77617; Mature: 77617
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQKITIDLQNFRKQKRLFYVLFLVLTAFKIQAQDISPIEKIAAEGYAKRFSDTVSCIKI CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QKQALHLAHKNKNKEDEVISYAYLALTQRRLLHLKEFMHYADTAFYLSQHITKIRAKAHA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAAMGSLKSYIEDKPQALNYLLEAYTLFSKVNAHDQCAKIASDISYLFSPASPTKVEKYA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH REALAHAEKSGDAESQLYARLAFGGFLADNLETGGILEWAAAVKFFEETVALAEKNADKI HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH VSKSNIGIAYVNLADLYTKGPKPIDEKAFLWNLQKAESIAKKYNVKIILRSAIGLKGYYF HHCCCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEE MQKGDYIRAELLFTEGINYQKSLPYTDNYLFTAFYKSLKDVAVKRKDFQAYYGYDTLYSK EECCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH YTQLKYKESTQALLQNADARYESSKKAERIKQLELEKELEQKNKLLGYGIAGVLLIGLVF HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH MFRSYYYRQRYYQNREDFLKQEQVHNELKMQLMEKETIENLAARLSLERRLLRSQMDPHF HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH IFNALGNIQSMILQKDTIPAVSYLNKFAKLTRQVLEQSRKETISLEEEINTLKNYIELQQ HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LRLNNGFDYVIECDENVETDILIPPLLIQPFIENAVEHGLKPQENSVKGLIEIYFKEDEE HHHCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEECCCCC QHSLICTIKDNGIGLAASRKLKINDTHQSLSTTITDERLSKMQKENPNAGFTVKERDPET CCCEEEEEECCCEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC DGRGCIVILNIPILS CCCCEEEEEECCCCC >Mature Secondary Structure MLQKITIDLQNFRKQKRLFYVLFLVLTAFKIQAQDISPIEKIAAEGYAKRFSDTVSCIKI CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QKQALHLAHKNKNKEDEVISYAYLALTQRRLLHLKEFMHYADTAFYLSQHITKIRAKAHA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAAMGSLKSYIEDKPQALNYLLEAYTLFSKVNAHDQCAKIASDISYLFSPASPTKVEKYA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH REALAHAEKSGDAESQLYARLAFGGFLADNLETGGILEWAAAVKFFEETVALAEKNADKI HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH VSKSNIGIAYVNLADLYTKGPKPIDEKAFLWNLQKAESIAKKYNVKIILRSAIGLKGYYF HHCCCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEE MQKGDYIRAELLFTEGINYQKSLPYTDNYLFTAFYKSLKDVAVKRKDFQAYYGYDTLYSK EECCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH YTQLKYKESTQALLQNADARYESSKKAERIKQLELEKELEQKNKLLGYGIAGVLLIGLVF HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH MFRSYYYRQRYYQNREDFLKQEQVHNELKMQLMEKETIENLAARLSLERRLLRSQMDPHF HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH IFNALGNIQSMILQKDTIPAVSYLNKFAKLTRQVLEQSRKETISLEEEINTLKNYIELQQ HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LRLNNGFDYVIECDENVETDILIPPLLIQPFIENAVEHGLKPQENSVKGLIEIYFKEDEE HHHCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEECCCCC QHSLICTIKDNGIGLAASRKLKINDTHQSLSTTITDERLSKMQKENPNAGFTVKERDPET CCCEEEEEECCCEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC DGRGCIVILNIPILS CCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA