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The map label for this gene is lytR [H]

Identifier: 146301714

GI number: 146301714

Start: 4761110

End: 4761853

Strand: Reverse

Name: lytR [H]

Synonym: Fjoh_3976

Alternate gene names: 146301714

Gene position: 4761853-4761110 (Counterclockwise)

Preceding gene: 146301715

Following gene: 146301713

Centisome position: 78.1

GC content: 35.62

Gene sequence:

>744_bases
ATGATTTATAAAACGATAATTATTGAAGACGAACATCGATTAAGAGAAGCTTTGTCGATTATGCTCGAAATGGTTTCCGG
CGATACGATTCAAATTGTTGGTTATGCCGAAAGTGTTCCCGAAGCTGTAAAAATGGTTGACAGACTAAAACCTGATTTGG
TTTTTATGGATATTATGCTGAAAGACGGAACTGGTTTTGATGTGCTGCAGCAAATTTCATTTAATTCATTTCACCTGATA
TTTACAACGGCTTTTGAACAGCATGCCATTAATGCGTTTAAATACAGTGCTGTAGATTATCTCTTAAAACCAATTGATCC
GCAGGAATTAAAAACGGCTATAGACCGCATTGCGATTCTAGAAGAAAGGGTTTTAGAAAAACAGCAGATTACAGAATTGC
AGACGAATTTATCAAAAACGCCGGACCGGCTTGTTCTGCCTACGCAGGAAGCAATGTATGTGGTAAAATTGGATCAGATT
TTAAGATGTGAAACTTCGGGTTCGTATACAACGTTTTTTTTAACAGACGGCAGAAAAATAATGGTTTCTAAGCCTTTAAA
GAATTATGAAGATATTCTGCTTCCGCCGATGTTTTTCAGGGTGCATCAATCGCATTTAATTAATGTTAATTCTATTTTGA
GTTATTCGCGTGAAGGAATGGTACATATGAACGATAAATCGGTTGTGCCGATTTCGAGAGGAAAGAAAGAACAGTTTTTT
AAATTAATGAAAGATGAAATTTAA

Upstream 100 bases:

>100_bases
TGCAGAAAGAAAACCCAAATGCCGGATTTACGGTTAAGGAACGTGATCCTGAAACTGACGGCCGCGGTTGTATAGTAATT
CTAAATATCCCGATTTTATC

Downstream 100 bases:

>100_bases
TTTCGGATAGTTCCTGACGGTTTATGTATTCAATTTATGCAAATACCAATTAAAAGCAACCAATGACAAAGTGCGGGTTT
GGGAGCTGTTTTATTGTATC

Product: LytTR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MIYKTIIIEDEHRLREALSIMLEMVSGDTIQIVGYAESVPEAVKMVDRLKPDLVFMDIMLKDGTGFDVLQQISFNSFHLI
FTTAFEQHAINAFKYSAVDYLLKPIDPQELKTAIDRIAILEERVLEKQQITELQTNLSKTPDRLVLPTQEAMYVVKLDQI
LRCETSGSYTTFFLTDGRKIMVSKPLKNYEDILLPPMFFRVHQSHLINVNSILSYSREGMVHMNDKSVVPISRGKKEQFF
KLMKDEI

Sequences:

>Translated_247_residues
MIYKTIIIEDEHRLREALSIMLEMVSGDTIQIVGYAESVPEAVKMVDRLKPDLVFMDIMLKDGTGFDVLQQISFNSFHLI
FTTAFEQHAINAFKYSAVDYLLKPIDPQELKTAIDRIAILEERVLEKQQITELQTNLSKTPDRLVLPTQEAMYVVKLDQI
LRCETSGSYTTFFLTDGRKIMVSKPLKNYEDILLPPMFFRVHQSHLINVNSILSYSREGMVHMNDKSVVPISRGKKEQFF
KLMKDEI
>Mature_247_residues
MIYKTIIIEDEHRLREALSIMLEMVSGDTIQIVGYAESVPEAVKMVDRLKPDLVFMDIMLKDGTGFDVLQQISFNSFHLI
FTTAFEQHAINAFKYSAVDYLLKPIDPQELKTAIDRIAILEERVLEKQQITELQTNLSKTPDRLVLPTQEAMYVVKLDQI
LRCETSGSYTTFFLTDGRKIMVSKPLKNYEDILLPPMFFRVHQSHLINVNSILSYSREGMVHMNDKSVVPISRGKKEQFF
KLMKDEI

Specific function: Member of the two-component regulatory system lytR/lytS that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082052, Length=251, Percent_Identity=27.0916334661355, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788724, Length=248, Percent_Identity=26.2096774193548, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28541; Mature: 28541

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYKTIIIEDEHRLREALSIMLEMVSGDTIQIVGYAESVPEAVKMVDRLKPDLVFMDIML
CEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEEE
KDGTGFDVLQQISFNSFHLIFTTAFEQHAINAFKYSAVDYLLKPIDPQELKTAIDRIAIL
ECCCCHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EERVLEKQQITELQTNLSKTPDRLVLPTQEAMYVVKLDQILRCETSGSYTTFFLTDGRKI
HHHHHHHHHHHHHHHHHCCCCCEEECCCHHHEEEEEHHHHHEECCCCCEEEEEEECCCEE
MVSKPLKNYEDILLPPMFFRVHQSHLINVNSILSYSREGMVHMNDKSVVPISRGKKEQFF
EEECCCCCCHHHCCCHHHHHHHHHHEECHHHHHHHCCCCEEEECCCEEECCCCCCHHHHH
KLMKDEI
HHHHHCC
>Mature Secondary Structure
MIYKTIIIEDEHRLREALSIMLEMVSGDTIQIVGYAESVPEAVKMVDRLKPDLVFMDIML
CEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEEE
KDGTGFDVLQQISFNSFHLIFTTAFEQHAINAFKYSAVDYLLKPIDPQELKTAIDRIAIL
ECCCCHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EERVLEKQQITELQTNLSKTPDRLVLPTQEAMYVVKLDQILRCETSGSYTTFFLTDGRKI
HHHHHHHHHHHHHHHHHCCCCCEEECCCHHHEEEEEHHHHHEECCCCCEEEEEEECCCEE
MVSKPLKNYEDILLPPMFFRVHQSHLINVNSILSYSREGMVHMNDKSVVPISRGKKEQFF
EEECCCCCCHHHCCCHHHHHHHHHHEECHHHHHHHCCCCEEEECCCEEECCCCCCHHHHH
KLMKDEI
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA