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The map label for this gene is yqhC [C]

Identifier: 146301692

GI number: 146301692

Start: 4724991

End: 4726055

Strand: Reverse

Name: yqhC [C]

Synonym: Fjoh_3954

Alternate gene names: 146301692

Gene position: 4726055-4724991 (Counterclockwise)

Preceding gene: 146301695

Following gene: 146301691

Centisome position: 77.52

GC content: 32.02

Gene sequence:

>1065_bases
ATGACTTTAGATAATTGGCCTAAACATATTCAGAAATATCTTTTTTTATTAAAAGACGGTTTCTTTCAATTTCCTTATTT
GTTCAATTCTCCGCAAATAATGTTAGATAGTATGTTGAAACTGCCTATTACAAGGCATTTTCCTGAAAAACGTCTTATTA
CTTTTAATACGTCATTGTGTAAAGCAAAAATGTATTACAGAGAAATGGATCAAGGTTTTTGGCTTTTGACATTTTATTTA
AATATGAAGGAAAACATTATGGCGCTTTCGGGCTATGATGATAAGCACAGCAGTGAATATTACCTTTTAACTTTTTCGAT
TTTTGAATATAAATTTCCTTTGAAGGACGGCAGCGCTTTAAATCTTCTAAGTACTTGCTGGACAATCAGCAAACCTAATA
CAGAGATTTCCAGTTATTTTTATAAACAAGCCAATGGAAAATTCTTCAGCATTGCCATTAATAAAGATTGGGCTAAAAAG
AATTTAACTTCTAAAAAATTCAAACAAAGAAAAACGATTTTAAATTTCCTGAATGGAAAAAGAGGATCTTATACCTGGCT
GGACATTTCGCAGAAGGCGCATGAAGTTGGCGCTGAGTTATCTGATTTATTGGAAAAAGAAAACAATTTTGAAGCAGATA
ACATTGCGATCAAAAAGAAGTCAATGAAATTAGTAACAGAGTTTTTTGATAATTGTTTTATTGATACTCGTATTGAAGAT
AATATTTCTTTAACCAATCTGGATTATCTGAACGTATCGAGAGCAGAGAAGATTATCCTGCAAAATCTTCATCTTCCTTT
TATTGGAATAGAGTATATAGCCAAAGAAGTTAACATGTCGACTACCAAATTAAAAGCAAATTTTAAAGCTGTTTTTGGAT
TTTCGATGCTGCAATACCATAAAGAAAAAAACATGATGCTTGCAGAACAGCTGGTTAAAAAATCAGATTTCAGTATTCAG
GAAATTGCTGTTGTTGCAGGTTATGATTCGGCAGGAAGATTCGCTTCTAGTTTTAAGAAAAGATTTGGCAAACTGCCGTC
AGAAGCTCGTTTTCAGGTGATTTGA

Upstream 100 bases:

>100_bases
AAGATTATAAAATTCATTTTTTTTATTTTTGTATGCTAAAATCCTTATTGACTATAAGGTAAGAACAAATTTATATCCGC
CTCGAACTGCTTTAATTTTT

Downstream 100 bases:

>100_bases
AAACTAAAATTTCCAAAAAAAATATTTTCTTCCCATTTTGTGATTTAATTCTTTGTAAATCAGTAAAAACATAATTATTT
CATTTATAGTGTTTTAAAAA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MTLDNWPKHIQKYLFLLKDGFFQFPYLFNSPQIMLDSMLKLPITRHFPEKRLITFNTSLCKAKMYYREMDQGFWLLTFYL
NMKENIMALSGYDDKHSSEYYLLTFSIFEYKFPLKDGSALNLLSTCWTISKPNTEISSYFYKQANGKFFSIAINKDWAKK
NLTSKKFKQRKTILNFLNGKRGSYTWLDISQKAHEVGAELSDLLEKENNFEADNIAIKKKSMKLVTEFFDNCFIDTRIED
NISLTNLDYLNVSRAEKIILQNLHLPFIGIEYIAKEVNMSTTKLKANFKAVFGFSMLQYHKEKNMMLAEQLVKKSDFSIQ
EIAVVAGYDSAGRFASSFKKRFGKLPSEARFQVI

Sequences:

>Translated_354_residues
MTLDNWPKHIQKYLFLLKDGFFQFPYLFNSPQIMLDSMLKLPITRHFPEKRLITFNTSLCKAKMYYREMDQGFWLLTFYL
NMKENIMALSGYDDKHSSEYYLLTFSIFEYKFPLKDGSALNLLSTCWTISKPNTEISSYFYKQANGKFFSIAINKDWAKK
NLTSKKFKQRKTILNFLNGKRGSYTWLDISQKAHEVGAELSDLLEKENNFEADNIAIKKKSMKLVTEFFDNCFIDTRIED
NISLTNLDYLNVSRAEKIILQNLHLPFIGIEYIAKEVNMSTTKLKANFKAVFGFSMLQYHKEKNMMLAEQLVKKSDFSIQ
EIAVVAGYDSAGRFASSFKKRFGKLPSEARFQVI
>Mature_353_residues
TLDNWPKHIQKYLFLLKDGFFQFPYLFNSPQIMLDSMLKLPITRHFPEKRLITFNTSLCKAKMYYREMDQGFWLLTFYLN
MKENIMALSGYDDKHSSEYYLLTFSIFEYKFPLKDGSALNLLSTCWTISKPNTEISSYFYKQANGKFFSIAINKDWAKKN
LTSKKFKQRKTILNFLNGKRGSYTWLDISQKAHEVGAELSDLLEKENNFEADNIAIKKKSMKLVTEFFDNCFIDTRIEDN
ISLTNLDYLNVSRAEKIILQNLHLPFIGIEYIAKEVNMSTTKLKANFKAVFGFSMLQYHKEKNMMLAEQLVKKSDFSIQE
IAVVAGYDSAGRFASSFKKRFGKLPSEARFQVI

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41400; Mature: 41269

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDNWPKHIQKYLFLLKDGFFQFPYLFNSPQIMLDSMLKLPITRHFPEKRLITFNTSLC
CCCCCHHHHHHHHHHHHHCCCEECCEEECCHHHHHHHHHHCCHHHCCCCCEEEEEECHHH
KAKMYYREMDQGFWLLTFYLNMKENIMALSGYDDKHSSEYYLLTFSIFEYKFPLKDGSAL
HHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCCHH
NLLSTCWTISKPNTEISSYFYKQANGKFFSIAINKDWAKKNLTSKKFKQRKTILNFLNGK
HHHHHHEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHCCC
RGSYTWLDISQKAHEVGAELSDLLEKENNFEADNIAIKKKSMKLVTEFFDNCFIDTRIED
CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCEEECEECC
NISLTNLDYLNVSRAEKIILQNLHLPFIGIEYIAKEVNMSTTKLKANFKAVFGFSMLQYH
CEEEEEECCCCHHHHHHHHHHHCCCCEEHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHH
KEKNMMLAEQLVKKSDFSIQEIAVVAGYDSAGRFASSFKKRFGKLPSEARFQVI
HHCCHHHHHHHHHHCCCCHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEC
>Mature Secondary Structure 
TLDNWPKHIQKYLFLLKDGFFQFPYLFNSPQIMLDSMLKLPITRHFPEKRLITFNTSLC
CCCCHHHHHHHHHHHHHCCCEECCEEECCHHHHHHHHHHCCHHHCCCCCEEEEEECHHH
KAKMYYREMDQGFWLLTFYLNMKENIMALSGYDDKHSSEYYLLTFSIFEYKFPLKDGSAL
HHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCCHH
NLLSTCWTISKPNTEISSYFYKQANGKFFSIAINKDWAKKNLTSKKFKQRKTILNFLNGK
HHHHHHEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHCCC
RGSYTWLDISQKAHEVGAELSDLLEKENNFEADNIAIKKKSMKLVTEFFDNCFIDTRIED
CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCEEECEECC
NISLTNLDYLNVSRAEKIILQNLHLPFIGIEYIAKEVNMSTTKLKANFKAVFGFSMLQYH
CEEEEEECCCCHHHHHHHHHHHCCCCEEHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHH
KEKNMMLAEQLVKKSDFSIQEIAVVAGYDSAGRFASSFKKRFGKLPSEARFQVI
HHCCHHHHHHHHHHCCCCHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA