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The map label for this gene is yybR [H]

Identifier: 146301695

GI number: 146301695

Start: 4727396

End: 4727764

Strand: Reverse

Name: yybR [H]

Synonym: Fjoh_3957

Alternate gene names: 146301695

Gene position: 4727764-4727396 (Counterclockwise)

Preceding gene: 146301697

Following gene: 146301692

Centisome position: 77.54

GC content: 38.21

Gene sequence:

>369_bases
ATGACAGCAATTAAAGAAACATCGACAATTCAGGAAAATAAGCAGTATGCCTTAGAAAAATGCCCCGTAACATTTGTAAT
GGAAAAAATAGGAGGGTATTGGAAACCTATAATTCTATATCATTTATCAACTGGCGATAAACGTTACAGCGAATTAAAAA
GGGCAATTCCGACTGTAACCGAGAAAATGCTCATTCAGCATTTAAAACAATTAGAAGCAGATGGTTTGGTAATAAGAGAA
GCAAAACCTGTTGTTCCGCCTTTTGTAACTTACAGACTCAGCACTGCCGGTGAAGGTTTGCTTCCTGTTATTGATGCTAT
GGCTTCGTGGGCTTTTAAGGTGAAAGACGGGGTTTATTCGGTGAAATGA

Upstream 100 bases:

>100_bases
CCTGATACTATAATTTTCATATATATAATTTTTTTTATTACAGTTACAAAGGTATCTTTGTACTTACTTTTATACAAGTA
CTTACCCTAAAGTATGTATC

Downstream 100 bases:

>100_bases
AAAAGAGGTACTGAAATGAAAAAGAGGTACTGAGATGCTAAGGTTCTAAGCTTCTAAGTTTTTTACAATCTTTGTCAAAG
CTTAAAACCTTGAAAAAGAA

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MTAIKETSTIQENKQYALEKCPVTFVMEKIGGYWKPIILYHLSTGDKRYSELKRAIPTVTEKMLIQHLKQLEADGLVIRE
AKPVVPPFVTYRLSTAGEGLLPVIDAMASWAFKVKDGVYSVK

Sequences:

>Translated_122_residues
MTAIKETSTIQENKQYALEKCPVTFVMEKIGGYWKPIILYHLSTGDKRYSELKRAIPTVTEKMLIQHLKQLEADGLVIRE
AKPVVPPFVTYRLSTAGEGLLPVIDAMASWAFKVKDGVYSVK
>Mature_121_residues
TAIKETSTIQENKQYALEKCPVTFVMEKIGGYWKPIILYHLSTGDKRYSELKRAIPTVTEKMLIQHLKQLEADGLVIREA
KPVVPPFVTYRLSTAGEGLLPVIDAMASWAFKVKDGVYSVK

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=110, Percent_Identity=39.0909090909091, Blast_Score=83, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13758; Mature: 13627

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAIKETSTIQENKQYALEKCPVTFVMEKIGGYWKPIILYHLSTGDKRYSELKRAIPTVT
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
EKMLIQHLKQLEADGLVIREAKPVVPPFVTYRLSTAGEGLLPVIDAMASWAFKVKDGVYS
HHHHHHHHHHHCCCCEEEECCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
VK
CC
>Mature Secondary Structure 
TAIKETSTIQENKQYALEKCPVTFVMEKIGGYWKPIILYHLSTGDKRYSELKRAIPTVT
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
EKMLIQHLKQLEADGLVIREAKPVVPPFVTYRLSTAGEGLLPVIDAMASWAFKVKDGVYS
HHHHHHHHHHHCCCCEEEECCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
VK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]