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The map label for this gene is rhaR [C]

Identifier: 146301293

GI number: 146301293

Start: 4238750

End: 4239445

Strand: Reverse

Name: rhaR [C]

Synonym: Fjoh_3551

Alternate gene names: 146301293

Gene position: 4239445-4238750 (Counterclockwise)

Preceding gene: 146301294

Following gene: 146301292

Centisome position: 69.53

GC content: 34.91

Gene sequence:

>696_bases
ATGGATCTGCTGGTGATACCAAGCGATTCATTTTGCAGCATCGTGCAGTTTGAAGGAAAGCTTCAGTTTTACCTGATCAC
TTTCAGCTTTGAATTCGCAATAAAAAATAGTTTGCGACAGGAACTAATTGAAGCCTTACACTTTATAATTACAAGAGCTT
CAATTAAGATAAAATTGGATGAAAAGGAGATGTTAATTCTATCCTTGATATATAAAGTGCTGTATTTTGTCACCAGAGAT
CCAGCAGTTAGCGGTAATGATAATGAACTGCATGGTATAAGTTTTAACCTATTTATGTATGAACTGAGATTAATCTACGC
AAAACATTCAAATGATTTTGCTCTGCAGTTTACGAGAAAAGAAAGTTTAATAATTCGATTTCTCACTATTTTGTCTATTC
ATTACAGAAAACAGCACAACGCCCAGTTTTATGCCGGCTCCCTTTTTGTTACAGCCGGCTATTTAAATCAAATGGTAAAA
GAAATAACAGGTAAAACCGTTAAGAAACTAATTGTTGAGACTATCATTTCGGAAGCAGAAAAACTGCTCGAAGATCCGCA
TAATACTGTGTCTCAAATCGCTGAAGATTTGGAATTCACCAGTGCCAATAGTTTTACGGTCTTTTTTAAAAGGCATACCA
ATTTATCCCCATCTCAATATCGTTTAAGTGCAATGGAAAAAAATAAGACACGCTAG

Upstream 100 bases:

>100_bases
TGTGAGTGAATCATTTCGGGTATCAAACTATTCCATTTTATTAATTAAATCCGGAAAACTAACTGTCCAGTTTCAGAAGA
CTGATCAGGTTCTGGCAGAA

Downstream 100 bases:

>100_bases
TTTCTGCTGCATAACTGTCAATCAAAACAGAAGTATGATGATTAGAAAATATCCGTTGGAATGGCTAGATGCTTTGATAT
TGCGTAACCTTGTCCAAAAT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; AraC-Type Transcription Regulator; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; AraC Family Regulatory Helix-Turn-Helix Protein; AraC-Family Transcriptional Regulator; Bacterial Regulatory Helix-Turn-Helix Protein; AraC-Type Transcriptional Regulator; Transcription Regulator

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MDLLVIPSDSFCSIVQFEGKLQFYLITFSFEFAIKNSLRQELIEALHFIITRASIKIKLDEKEMLILSLIYKVLYFVTRD
PAVSGNDNELHGISFNLFMYELRLIYAKHSNDFALQFTRKESLIIRFLTILSIHYRKQHNAQFYAGSLFVTAGYLNQMVK
EITGKTVKKLIVETIISEAEKLLEDPHNTVSQIAEDLEFTSANSFTVFFKRHTNLSPSQYRLSAMEKNKTR

Sequences:

>Translated_231_residues
MDLLVIPSDSFCSIVQFEGKLQFYLITFSFEFAIKNSLRQELIEALHFIITRASIKIKLDEKEMLILSLIYKVLYFVTRD
PAVSGNDNELHGISFNLFMYELRLIYAKHSNDFALQFTRKESLIIRFLTILSIHYRKQHNAQFYAGSLFVTAGYLNQMVK
EITGKTVKKLIVETIISEAEKLLEDPHNTVSQIAEDLEFTSANSFTVFFKRHTNLSPSQYRLSAMEKNKTR
>Mature_231_residues
MDLLVIPSDSFCSIVQFEGKLQFYLITFSFEFAIKNSLRQELIEALHFIITRASIKIKLDEKEMLILSLIYKVLYFVTRD
PAVSGNDNELHGISFNLFMYELRLIYAKHSNDFALQFTRKESLIIRFLTILSIHYRKQHNAQFYAGSLFVTAGYLNQMVK
EITGKTVKKLIVETIISEAEKLLEDPHNTVSQIAEDLEFTSANSFTVFFKRHTNLSPSQYRLSAMEKNKTR

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26827; Mature: 26827

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLVIPSDSFCSIVQFEGKLQFYLITFSFEFAIKNSLRQELIEALHFIITRASIKIKLD
CCEEEECCCCCEEEEEECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCEEEEEEC
EKEMLILSLIYKVLYFVTRDPAVSGNDNELHGISFNLFMYELRLIYAKHSNDFALQFTRK
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHEEEEEEEECCCCEEEEEECH
ESLIIRFLTILSIHYRKQHNAQFYAGSLFVTAGYLNQMVKEITGKTVKKLIVETIISEAE
HHHHHHHHHHHHHHHHHCCCCEEEECHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLLEDPHNTVSQIAEDLEFTSANSFTVFFKRHTNLSPSQYRLSAMEKNKTR
HHHHCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDLLVIPSDSFCSIVQFEGKLQFYLITFSFEFAIKNSLRQELIEALHFIITRASIKIKLD
CCEEEECCCCCEEEEEECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCEEEEEEC
EKEMLILSLIYKVLYFVTRDPAVSGNDNELHGISFNLFMYELRLIYAKHSNDFALQFTRK
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHEEEEEEEECCCCEEEEEECH
ESLIIRFLTILSIHYRKQHNAQFYAGSLFVTAGYLNQMVKEITGKTVKKLIVETIISEAE
HHHHHHHHHHHHHHHHHCCCCEEEECHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLLEDPHNTVSQIAEDLEFTSANSFTVFFKRHTNLSPSQYRLSAMEKNKTR
HHHHCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA