| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301292
Identifier: 146301292
GI number: 146301292
Start: 4237516
End: 4238778
Strand: Reverse
Name: 146301292
Synonym: Fjoh_3550
Alternate gene names: NA
Gene position: 4238778-4237516 (Counterclockwise)
Preceding gene: 146301293
Following gene: 146301291
Centisome position: 69.52
GC content: 35.87
Gene sequence:
>1263_bases GTGCAATGGAAAAAAATAAGACACGCTAGTTTCTGCTGCATAACTGTCAATCAAAACAGAAGTATGATGATTAGAAAATA TCCGTTGGAATGGCTAGATGCTTTGATATTGCGTAACCTTGTCCAAAATCGTAACATTATTAATATTACGGAGCAAGAGT TAGCAATGATATGTGATGCCATACAGAAGGAAGCTCTCAATATTGAAATTCAGATAAAAGACGAGGTATTTGCAACGACA AAGAAAAGCGAGGTCAGGCTTTTGATCCGGAAATACCATTCCTATTTTATATTCCTGATTGACAAGATTGCAGAAAACAG AAAAAATGATCGGTATAAAACAAAAAGCATTCTGCAGATTTCACAAACGATAGTAGATACCTTATCGAATTTACTTTCTT TCATTGAAACCCGATTTGATGAATACCTTAGTCTCGATCAAAGGGTACCATTGACATATCTGCAGGTTTCCAGACGCGAG CTAATGCTCAGGCTTCGAAACATAAAAAAAATAGAATGCGATATCACTGAGGATTGTAAGACGCTGGACCTTATAATAGA TAGTTTTAATCAGCACTTTCAATCTCGTAATGCTCCTAAAAGCACATATAGGCTGTTAAGATACCAAAAGAACCTGCTGC ACCTCATAGAGAAATTCAATTTTGAGCGAAAGGATGGGAATTTTTTTTCGCTGTTAGATGAAAAGCTGATCAATCTTAAT TTCAATTCAGCTGATTATTACAGTTATATCATCACAAGAATTGCAGCCCATTTGACGGCTAAAAATCAAAAATCTGGAAA ATTAGCTTTTTTACTGATTGTTTTCAAAGAATTAAATCAGATCGAATCCAGCGAAAAGATTTGTTTCGATCCAGGTCAGA GTAATATAAAAGTTTCAGTAACCAACTGGATAAAATACGAAACTCAATATATTGAAAAAAGTATAGAGCTGAATATTGGC CAAAAAGAGATGACAGTATCGAAAGAGGAACTGCAGCACGATCTGCTGAAAGAAAAGGTGGAATGCATATTGTCAACAGA TCAGATCGGATTAATTCTCCGGGCGGGGGATGAATCGAGAATATTAAAGGCAAAATCAATGAACCAGGTTTTCAAATCAA TCGTTCCCTATCTGTCTACATCTCAGAAAAGGGATCTCTCGTACAAATCCATGAGAAGCAAATCCTACACTGCAGAGGAA AGGGACAAGGAAATTGCTATAAAGACCCTGGAGCGAATAATTAAACATATACAGCAATATTAA
Upstream 100 bases:
>100_bases GTGTCTCAAATCGCTGAAGATTTGGAATTCACCAGTGCCAATAGTTTTACGGTCTTTTTTAAAAGGCATACCAATTTATC CCCATCTCAATATCGTTTAA
Downstream 100 bases:
>100_bases TGGATTGATCTGCTTTTTAAACCTCCTTACGGAGGTTTTTTTATTTTCGTATTTCAGATAATTTGGGGAGCAACTTGGGG AGCAGCTAAAAGTTGTCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MQWKKIRHASFCCITVNQNRSMMIRKYPLEWLDALILRNLVQNRNIINITEQELAMICDAIQKEALNIEIQIKDEVFATT KKSEVRLLIRKYHSYFIFLIDKIAENRKNDRYKTKSILQISQTIVDTLSNLLSFIETRFDEYLSLDQRVPLTYLQVSRRE LMLRLRNIKKIECDITEDCKTLDLIIDSFNQHFQSRNAPKSTYRLLRYQKNLLHLIEKFNFERKDGNFFSLLDEKLINLN FNSADYYSYIITRIAAHLTAKNQKSGKLAFLLIVFKELNQIESSEKICFDPGQSNIKVSVTNWIKYETQYIEKSIELNIG QKEMTVSKEELQHDLLKEKVECILSTDQIGLILRAGDESRILKAKSMNQVFKSIVPYLSTSQKRDLSYKSMRSKSYTAEE RDKEIAIKTLERIIKHIQQY
Sequences:
>Translated_420_residues MQWKKIRHASFCCITVNQNRSMMIRKYPLEWLDALILRNLVQNRNIINITEQELAMICDAIQKEALNIEIQIKDEVFATT KKSEVRLLIRKYHSYFIFLIDKIAENRKNDRYKTKSILQISQTIVDTLSNLLSFIETRFDEYLSLDQRVPLTYLQVSRRE LMLRLRNIKKIECDITEDCKTLDLIIDSFNQHFQSRNAPKSTYRLLRYQKNLLHLIEKFNFERKDGNFFSLLDEKLINLN FNSADYYSYIITRIAAHLTAKNQKSGKLAFLLIVFKELNQIESSEKICFDPGQSNIKVSVTNWIKYETQYIEKSIELNIG QKEMTVSKEELQHDLLKEKVECILSTDQIGLILRAGDESRILKAKSMNQVFKSIVPYLSTSQKRDLSYKSMRSKSYTAEE RDKEIAIKTLERIIKHIQQY >Mature_420_residues MQWKKIRHASFCCITVNQNRSMMIRKYPLEWLDALILRNLVQNRNIINITEQELAMICDAIQKEALNIEIQIKDEVFATT KKSEVRLLIRKYHSYFIFLIDKIAENRKNDRYKTKSILQISQTIVDTLSNLLSFIETRFDEYLSLDQRVPLTYLQVSRRE LMLRLRNIKKIECDITEDCKTLDLIIDSFNQHFQSRNAPKSTYRLLRYQKNLLHLIEKFNFERKDGNFFSLLDEKLINLN FNSADYYSYIITRIAAHLTAKNQKSGKLAFLLIVFKELNQIESSEKICFDPGQSNIKVSVTNWIKYETQYIEKSIELNIG QKEMTVSKEELQHDLLKEKVECILSTDQIGLILRAGDESRILKAKSMNQVFKSIVPYLSTSQKRDLSYKSMRSKSYTAEE RDKEIAIKTLERIIKHIQQY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49661; Mature: 49661
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQWKKIRHASFCCITVNQNRSMMIRKYPLEWLDALILRNLVQNRNIINITEQELAMICDA CCCCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH IQKEALNIEIQIKDEVFATTKKSEVRLLIRKYHSYFIFLIDKIAENRKNDRYKTKSILQI HHHHHEEEEEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH SQTIVDTLSNLLSFIETRFDEYLSLDQRVPLTYLQVSRRELMLRLRNIKKIECDITEDCK HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH TLDLIIDSFNQHFQSRNAPKSTYRLLRYQKNLLHLIEKFNFERKDGNFFSLLDEKLINLN HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC FNSADYYSYIITRIAAHLTAKNQKSGKLAFLLIVFKELNQIESSEKICFDPGQSNIKVSV CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEE TNWIKYETQYIEKSIELNIGQKEMTVSKEELQHDLLKEKVECILSTDQIGLILRAGDESR EHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH ILKAKSMNQVFKSIVPYLSTSQKRDLSYKSMRSKSYTAEERDKEIAIKTLERIIKHIQQY HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQWKKIRHASFCCITVNQNRSMMIRKYPLEWLDALILRNLVQNRNIINITEQELAMICDA CCCCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH IQKEALNIEIQIKDEVFATTKKSEVRLLIRKYHSYFIFLIDKIAENRKNDRYKTKSILQI HHHHHEEEEEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH SQTIVDTLSNLLSFIETRFDEYLSLDQRVPLTYLQVSRRELMLRLRNIKKIECDITEDCK HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH TLDLIIDSFNQHFQSRNAPKSTYRLLRYQKNLLHLIEKFNFERKDGNFFSLLDEKLINLN HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC FNSADYYSYIITRIAAHLTAKNQKSGKLAFLLIVFKELNQIESSEKICFDPGQSNIKVSV CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEE TNWIKYETQYIEKSIELNIGQKEMTVSKEELQHDLLKEKVECILSTDQIGLILRAGDESR EHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH ILKAKSMNQVFKSIVPYLSTSQKRDLSYKSMRSKSYTAEERDKEIAIKTLERIIKHIQQY HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA