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The map label for this gene is traC [H]

Identifier: 146301287

GI number: 146301287

Start: 4232948

End: 4235383

Strand: Reverse

Name: traC [H]

Synonym: Fjoh_3545

Alternate gene names: 146301287

Gene position: 4235383-4232948 (Counterclockwise)

Preceding gene: 146301288

Following gene: 146301286

Centisome position: 69.47

GC content: 41.17

Gene sequence:

>2436_bases
ATGGACGTACAGCATGACTGTATTTTGTCAAAACAGGGTGATGTGACGATAGTATTTAAAGCAGATCTGCCAGAGATTTT
TACGCTGTCAGACCAGGAATATGAGGCTTTCCATCAGTCCTGGATTAAGGCGGTTAAGCTACTGCCGAAATTCTGCGTAT
TTCACAAGCAGGACTGGTTTTTGGAAAAAGGATACAGAGCCGATTTTTCAAATGATGACACCAGTTTCCTAAGCAGGAGC
AGTGAAAGGTTTTTCAATGAAAGGCCGTTTCTTGATCACAGCTGTTATATAATGCTGACTAAAAAACCGGCGGGAAGAAA
AAGTTCCAGTTCCCTATTTTCAACTCTGATCAGAAACACCCCTGTCCCGGAAGAAACTTTGAAGCCCCAGCTGCTGCAGG
ATTTTCTGGATTCAGCAGGACAGTTCAAAAGAGTACTCGAAGACAGCGGCTTTGTAAAGCTCAACAGACTTAAAAATGAG
GATCTTAAAAGCCAGAGCAGAAAGATTGGACTTATTGAGAGGTACTGTTTCTTATCGGATAAGGAAAGTGAATTTATATT
TAATGATATTTCATTTAAAGACGGTTTAAGAATAGGAGATAAGCATTGCCAGCTGTTTACTCTGGGGGATGCGGCTGATC
TTCCGGGACTGTGCGGATCACGCATAAATTTTGACCGATATTCTACTGATAAAACTAAGTTCAGCATTGGTTTTGCTTCA
ACTCTGGGACAGCTTTTATCCTGTAATCACATCTATAACCAGTATATTTTTATTGAAGATGCACAGAAAACAATTCAGAA
ACTGGAGAGCAAAAGACTAAGGCTTCAGTCGTTATCTGCCTACAGCCGTGAGAACATGATAGCCCGTGACGCCACGAACG
ATTTTCTCAATGAAGCGATCGCGCAGCAGAGACTTCCTGTAAAAGCACATTTTAATGTACTGGCTTGGACCGATAATGAG
GAAAATCTAAAGGAAATAAAAAACAAGGTTTCATCGGCACTGGCTCAGATGGATGCTGCCGCCAAACAGGAAACTGTCGG
GGCGCCGCAGATCTATTGGGCGGGACTGCCCGGCAATGCTGCTGATTTTCCAATGAATGACACTTTTGATACCTTCACAG
AGCAGGCAGTCTGCTTTCTGAATATGGAAACGGGTTACCGTTCCTCACTCAGTCCAATGGGAATCCGATTAGGAGACCGG
CTGACTGGAAAACCAGTCCATGTGGATATAAGTGATGAGCCCGTCAGAAAAGGAATATGCACCAACCGCAATAAATTTAT
TCTTGGGCCATCGGGAAGCGGCAAGTCCTTTTTCACTAACCATATGGTCAGAAGTTATTATGAGCAGGGAACACATGTGG
TGCTTGTGGATGTAGGCCACAGCTATAAGGGGCTATGTGATATGGTTGGCGGATATTACTTTACTTATGATGAAAAGAAT
CCGATACGTTTCAATCCTTTTTATATTTCAGAAGGGGATAGTCTGGATACTGAGAAAAAAGAAAGCATCAAAACACTGCT
GCTGGCACTTTGGAAGAAAGATGACGAAACATTTAACAGAAGCGAGTATGTTGCGCTTTCCAATGCGCTGCAGCTGTACT
ATGAAAAACTCGACAGGGAAAAAGAGATTTTCCCGTGTTTTAACAGCTTCTATGAATTTCTTAGAGAAGAGTTTATCAGG
ATTCTGGAGAATGATAAAGTAAAGGAGAAAGACTTTGACATTACTAATTTTCTCTATGTTCTCAGACCCTACTATAAAAG
CGGTGAGTTTGACTATCTATTGAACGCAACAGAGAATCTGGAGCTTCTGAAAGAACGTTTCATCGTATTTGAACTCGATA
ATATCAAAGATCATCCTATACTTTTTCCAGTGGTCACAATCATCATTATGGAGGTTTTTATCAGCAAGATGAGAAAACTC
AAAGGAATCCGGAAAATGATTTTGATTGAAGAGGCCTGGAAAGCAATCGCAAAAGAAGGAATGGCGGAATATATCAAGTA
CTTATTTAAGACTGTGCGTAAGTTCTTTGGAGAGGCTATTGTAGTAACACAGGAAGTGGAAGATATCATTTCTTCTCCTG
TTGTCAAACAGGCAATTATCAATAACAGCGACTGTAAAATTCTTTTGGATCAGAGCAAATACCAGAACAAATTTGACCAG
ATTCAGGAACTTCTTGGCCTGACAGAAAAAGAAAAAGGGCTGGTACTATCGGTCAACAAAGCCAATGATCCTTCAAAAAA
ATACAAAGAGGTATTTATATCCCTGGGGGGGATGTCTTCCAAAGTATACCGGACAGAGGTATCGCTGGAGGAATATCTTG
CCTATACAACCGAAGAGAGCGAGAAGATGAAAATGAACCAATATGCGGCAAAGTTCGGCGGAGACATAAAAAAAGGAATT
GCCGCAATGGCAAATGAAATAAGAAACGGTAAATAA

Upstream 100 bases:

>100_bases
CTGCATATTTTAAATTCAGCCAGAAGTGTCTGGCGGAAAAAAGTGAAAATGAGTAAAACAAGGAAAAATGGAAAAAGAAT
TGGATGATGTATTACCGATT

Downstream 100 bases:

>100_bases
AAATTGAAAATGAAAACGAGAATAACTGCCTGCCTGATCTGTCTGCTGCTAATAAGCACTCCTGCAAGACCGGCAGAAAA
AACCGCTGTACTGCCTATAC

Product: Type IV secretory pathway VirB4 components-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 811; Mature: 811

Protein sequence:

>811_residues
MDVQHDCILSKQGDVTIVFKADLPEIFTLSDQEYEAFHQSWIKAVKLLPKFCVFHKQDWFLEKGYRADFSNDDTSFLSRS
SERFFNERPFLDHSCYIMLTKKPAGRKSSSSLFSTLIRNTPVPEETLKPQLLQDFLDSAGQFKRVLEDSGFVKLNRLKNE
DLKSQSRKIGLIERYCFLSDKESEFIFNDISFKDGLRIGDKHCQLFTLGDAADLPGLCGSRINFDRYSTDKTKFSIGFAS
TLGQLLSCNHIYNQYIFIEDAQKTIQKLESKRLRLQSLSAYSRENMIARDATNDFLNEAIAQQRLPVKAHFNVLAWTDNE
ENLKEIKNKVSSALAQMDAAAKQETVGAPQIYWAGLPGNAADFPMNDTFDTFTEQAVCFLNMETGYRSSLSPMGIRLGDR
LTGKPVHVDISDEPVRKGICTNRNKFILGPSGSGKSFFTNHMVRSYYEQGTHVVLVDVGHSYKGLCDMVGGYYFTYDEKN
PIRFNPFYISEGDSLDTEKKESIKTLLLALWKKDDETFNRSEYVALSNALQLYYEKLDREKEIFPCFNSFYEFLREEFIR
ILENDKVKEKDFDITNFLYVLRPYYKSGEFDYLLNATENLELLKERFIVFELDNIKDHPILFPVVTIIIMEVFISKMRKL
KGIRKMILIEEAWKAIAKEGMAEYIKYLFKTVRKFFGEAIVVTQEVEDIISSPVVKQAIINNSDCKILLDQSKYQNKFDQ
IQELLGLTEKEKGLVLSVNKANDPSKKYKEVFISLGGMSSKVYRTEVSLEEYLAYTTEESEKMKMNQYAAKFGGDIKKGI
AAMANEIRNGK

Sequences:

>Translated_811_residues
MDVQHDCILSKQGDVTIVFKADLPEIFTLSDQEYEAFHQSWIKAVKLLPKFCVFHKQDWFLEKGYRADFSNDDTSFLSRS
SERFFNERPFLDHSCYIMLTKKPAGRKSSSSLFSTLIRNTPVPEETLKPQLLQDFLDSAGQFKRVLEDSGFVKLNRLKNE
DLKSQSRKIGLIERYCFLSDKESEFIFNDISFKDGLRIGDKHCQLFTLGDAADLPGLCGSRINFDRYSTDKTKFSIGFAS
TLGQLLSCNHIYNQYIFIEDAQKTIQKLESKRLRLQSLSAYSRENMIARDATNDFLNEAIAQQRLPVKAHFNVLAWTDNE
ENLKEIKNKVSSALAQMDAAAKQETVGAPQIYWAGLPGNAADFPMNDTFDTFTEQAVCFLNMETGYRSSLSPMGIRLGDR
LTGKPVHVDISDEPVRKGICTNRNKFILGPSGSGKSFFTNHMVRSYYEQGTHVVLVDVGHSYKGLCDMVGGYYFTYDEKN
PIRFNPFYISEGDSLDTEKKESIKTLLLALWKKDDETFNRSEYVALSNALQLYYEKLDREKEIFPCFNSFYEFLREEFIR
ILENDKVKEKDFDITNFLYVLRPYYKSGEFDYLLNATENLELLKERFIVFELDNIKDHPILFPVVTIIIMEVFISKMRKL
KGIRKMILIEEAWKAIAKEGMAEYIKYLFKTVRKFFGEAIVVTQEVEDIISSPVVKQAIINNSDCKILLDQSKYQNKFDQ
IQELLGLTEKEKGLVLSVNKANDPSKKYKEVFISLGGMSSKVYRTEVSLEEYLAYTTEESEKMKMNQYAAKFGGDIKKGI
AAMANEIRNGK
>Mature_811_residues
MDVQHDCILSKQGDVTIVFKADLPEIFTLSDQEYEAFHQSWIKAVKLLPKFCVFHKQDWFLEKGYRADFSNDDTSFLSRS
SERFFNERPFLDHSCYIMLTKKPAGRKSSSSLFSTLIRNTPVPEETLKPQLLQDFLDSAGQFKRVLEDSGFVKLNRLKNE
DLKSQSRKIGLIERYCFLSDKESEFIFNDISFKDGLRIGDKHCQLFTLGDAADLPGLCGSRINFDRYSTDKTKFSIGFAS
TLGQLLSCNHIYNQYIFIEDAQKTIQKLESKRLRLQSLSAYSRENMIARDATNDFLNEAIAQQRLPVKAHFNVLAWTDNE
ENLKEIKNKVSSALAQMDAAAKQETVGAPQIYWAGLPGNAADFPMNDTFDTFTEQAVCFLNMETGYRSSLSPMGIRLGDR
LTGKPVHVDISDEPVRKGICTNRNKFILGPSGSGKSFFTNHMVRSYYEQGTHVVLVDVGHSYKGLCDMVGGYYFTYDEKN
PIRFNPFYISEGDSLDTEKKESIKTLLLALWKKDDETFNRSEYVALSNALQLYYEKLDREKEIFPCFNSFYEFLREEFIR
ILENDKVKEKDFDITNFLYVLRPYYKSGEFDYLLNATENLELLKERFIVFELDNIKDHPILFPVVTIIIMEVFISKMRKL
KGIRKMILIEEAWKAIAKEGMAEYIKYLFKTVRKFFGEAIVVTQEVEDIISSPVVKQAIINNSDCKILLDQSKYQNKFDQ
IQELLGLTEKEKGLVLSVNKANDPSKKYKEVFISLGGMSSKVYRTEVSLEEYLAYTTEESEKMKMNQYAAKFGGDIKKGI
AAMANEIRNGK

Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002789
- InterPro:   IPR014117 [H]

Pfam domain/function: PF01935 DUF87 [H]

EC number: NA

Molecular weight: Translated: 93327; Mature: 93327

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVQHDCILSKQGDVTIVFKADLPEIFTLSDQEYEAFHQSWIKAVKLLPKFCVFHKQDWF
CCCCCCCEECCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LEKGYRADFSNDDTSFLSRSSERFFNERPFLDHSCYIMLTKKPAGRKSSSSLFSTLIRNT
HHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCC
PVPEETLKPQLLQDFLDSAGQFKRVLEDSGFVKLNRLKNEDLKSQSRKIGLIERYCFLSD
CCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCHHHHHHHCCC
KESEFIFNDISFKDGLRIGDKHCQLFTLGDAADLPGLCGSRINFDRYSTDKTKFSIGFAS
CCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH
TLGQLLSCNHIYNQYIFIEDAQKTIQKLESKRLRLQSLSAYSRENMIARDATNDFLNEAI
HHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AQQRLPVKAHFNVLAWTDNEENLKEIKNKVSSALAQMDAAAKQETVGAPQIYWAGLPGNA
HHHCCCEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
ADFPMNDTFDTFTEQAVCFLNMETGYRSSLSPMGIRLGDRLTGKPVHVDISDEPVRKGIC
CCCCCCCCHHHHHCCEEEEEEECCCCCCCCCCCCEECCCCCCCCEEEEECCCCHHHCCCC
TNRNKFILGPSGSGKSFFTNHMVRSYYEQGTHVVLVDVGHSYKGLCDMVGGYYFTYDEKN
CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCEEEEECCCC
PIRFNPFYISEGDSLDTEKKESIKTLLLALWKKDDETFNRSEYVALSNALQLYYEKLDRE
CEEECCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
KEIFPCFNSFYEFLREEFIRILENDKVKEKDFDITNFLYVLRPYYKSGEFDYLLNATENL
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHH
ELLKERFIVFELDNIKDHPILFPVVTIIIMEVFISKMRKLKGIRKMILIEEAWKAIAKEG
HHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAEYIKYLFKTVRKFFGEAIVVTQEVEDIISSPVVKQAIINNSDCKILLDQSKYQNKFDQ
HHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCHHHHHHHHCCCCCEEEECCHHHHHHHHH
IQELLGLTEKEKGLVLSVNKANDPSKKYKEVFISLGGMSSKVYRTEVSLEEYLAYTTEES
HHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHCCCCH
EKMKMNQYAAKFGGDIKKGIAAMANEIRNGK
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDVQHDCILSKQGDVTIVFKADLPEIFTLSDQEYEAFHQSWIKAVKLLPKFCVFHKQDWF
CCCCCCCEECCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LEKGYRADFSNDDTSFLSRSSERFFNERPFLDHSCYIMLTKKPAGRKSSSSLFSTLIRNT
HHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCC
PVPEETLKPQLLQDFLDSAGQFKRVLEDSGFVKLNRLKNEDLKSQSRKIGLIERYCFLSD
CCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCHHHHHHHCCC
KESEFIFNDISFKDGLRIGDKHCQLFTLGDAADLPGLCGSRINFDRYSTDKTKFSIGFAS
CCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH
TLGQLLSCNHIYNQYIFIEDAQKTIQKLESKRLRLQSLSAYSRENMIARDATNDFLNEAI
HHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AQQRLPVKAHFNVLAWTDNEENLKEIKNKVSSALAQMDAAAKQETVGAPQIYWAGLPGNA
HHHCCCEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
ADFPMNDTFDTFTEQAVCFLNMETGYRSSLSPMGIRLGDRLTGKPVHVDISDEPVRKGIC
CCCCCCCCHHHHHCCEEEEEEECCCCCCCCCCCCEECCCCCCCCEEEEECCCCHHHCCCC
TNRNKFILGPSGSGKSFFTNHMVRSYYEQGTHVVLVDVGHSYKGLCDMVGGYYFTYDEKN
CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCEEEEECCCC
PIRFNPFYISEGDSLDTEKKESIKTLLLALWKKDDETFNRSEYVALSNALQLYYEKLDRE
CEEECCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
KEIFPCFNSFYEFLREEFIRILENDKVKEKDFDITNFLYVLRPYYKSGEFDYLLNATENL
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHH
ELLKERFIVFELDNIKDHPILFPVVTIIIMEVFISKMRKLKGIRKMILIEEAWKAIAKEG
HHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAEYIKYLFKTVRKFFGEAIVVTQEVEDIISSPVVKQAIINNSDCKILLDQSKYQNKFDQ
HHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCHHHHHHHHCCCCCEEEECCHHHHHHHHH
IQELLGLTEKEKGLVLSVNKANDPSKKYKEVFISLGGMSSKVYRTEVSLEEYLAYTTEES
HHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHCCCCH
EKMKMNQYAAKFGGDIKKGIAAMANEIRNGK
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2265751; 7915817; 1355084 [H]