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The map label for this gene is ytcD [H]

Identifier: 146301067

GI number: 146301067

Start: 3970062

End: 3970433

Strand: Direct

Name: ytcD [H]

Synonym: Fjoh_3323

Alternate gene names: 146301067

Gene position: 3970062-3970433 (Clockwise)

Preceding gene: 146301065

Following gene: 146301068

Centisome position: 65.12

GC content: 36.83

Gene sequence:

>372_bases
ATGAAAACAAAAGGTGAACTAACAAAAGAAATGGACTGTCAGCCGGAAGAATGTCTTGCTGCATTATTACCCGTAAGAGA
TGCTCTGGAAGTTTTAAGCGGCAGATGGAAACTCCCAATTTTAATTGCCTTATCAAACAGACCGAAACGTTTCAAGGAAA
TTTCTAAAGACATAAACGGAATTACTGATAAAATGCTTTCTAAAGAACTGAAAGATCTGGAAATAAACAAACTGGTTACC
AGAACAGTTTATGACACCTTTCCGCCAACTGTTGAGTACGCCAGAACAGAACACAGTCATACTTTGTATAATGTTATAAG
TGCATTAAACGAATGGGGAACTTTGCACCGAAAAGAAATTATAGGCAAGTAA

Upstream 100 bases:

>100_bases
ATAATTTGTTTTACGATACAAACTTATCTACATTTGCTATCTCTTTTATAGTACTATCCTCAAGGATAGCGCTTTCATTG
AGGATAGTAACATAATTAGT

Downstream 100 bases:

>100_bases
ACTATTGAATTACAGAAGAAATTAATCTGTATCGAAAAACTTTATACCTCTGTTTCGTAGTAAATCTGCACCTTTTGAAG
TCCTCAATCGATATCGTAAA

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKTKGELTKEMDCQPEECLAALLPVRDALEVLSGRWKLPILIALSNRPKRFKEISKDINGITDKMLSKELKDLEINKLVT
RTVYDTFPPTVEYARTEHSHTLYNVISALNEWGTLHRKEIIGK

Sequences:

>Translated_123_residues
MKTKGELTKEMDCQPEECLAALLPVRDALEVLSGRWKLPILIALSNRPKRFKEISKDINGITDKMLSKELKDLEINKLVT
RTVYDTFPPTVEYARTEHSHTLYNVISALNEWGTLHRKEIIGK
>Mature_123_residues
MKTKGELTKEMDCQPEECLAALLPVRDALEVLSGRWKLPILIALSNRPKRFKEISKDINGITDKMLSKELKDLEINKLVT
RTVYDTFPPTVEYARTEHSHTLYNVISALNEWGTLHRKEIIGK

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=114, Percent_Identity=31.5789473684211, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14136; Mature: 14136

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKGELTKEMDCQPEECLAALLPVRDALEVLSGRWKLPILIALSNRPKRFKEISKDING
CCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH
ITDKMLSKELKDLEINKLVTRTVYDTFPPTVEYARTEHSHTLYNVISALNEWGTLHRKEI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IGK
CCC
>Mature Secondary Structure
MKTKGELTKEMDCQPEECLAALLPVRDALEVLSGRWKLPILIALSNRPKRFKEISKDING
CCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH
ITDKMLSKELKDLEINKLVTRTVYDTFPPTVEYARTEHSHTLYNVISALNEWGTLHRKEI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IGK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]