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The map label for this gene is ydhM [C]

Identifier: 146301035

GI number: 146301035

Start: 3934167

End: 3934754

Strand: Direct

Name: ydhM [C]

Synonym: Fjoh_3291

Alternate gene names: 146301035

Gene position: 3934167-3934754 (Clockwise)

Preceding gene: 146301034

Following gene: 146301036

Centisome position: 64.53

GC content: 35.37

Gene sequence:

>588_bases
ATGGCAAAAGGTGAAGAAACCAGACAGTTTATTATAGAAAAAGCGGCTCCTATTTTTAACACAAAAGGAATTGCAGCTAC
TTCTATGAGCGATATTATGGAGGCAACCAAATTGTCTAAAGGAAGCATGTATGTTCATTTTGAAAATAAAGAAGTATTGG
CCTGCGCTGCTGTCGATCATAATATGAAAATATTAAGCTCTAAACTTCAAAATGCCTTAAGTGGAAGCTCAACATCTAAA
GAAGCTTTATTTGCTTATATTGATTTTTTCAGCAATCCTACTCACCCGCCCGTTATTGGCGGCTGTCCTTTATTGAATTT
CGGAACTGAGGCTGATGACACGAACCCAATTGTAAAAGAAAAAGTTAACAGCGCTATTAAACAAGGACAACAATTATTAT
CCGGCATTATAGAAAAAGGAATTGCCAATAAAGAATTTAAAAAAGATTTTAACCCGTCAGAATTTGCCACTGCAATGTTT
GCAATGCTAGAAGGCGGTCATTTAATGGCCAGAGTTTCTGGCAGTAATGATAAAATGGAAATCGTAGCCAAAACGCTTAA
AAATTTAATTGAACAAAACACTATCTAA

Upstream 100 bases:

>100_bases
CTTTTTTTGGGGTTTAAAATATCCTAAAAATAAAAAAGTTTAAAAATATTTGTTTTTATGACCAATCGGTCATATATTTG
CAGTGTAAAATTCAGCTATC

Downstream 100 bases:

>100_bases
TTTTTTTTATCAAAAAAATGACCGATAGGTCATTTTTAAATTACAATAAAAATAACAATCGCAATGGCAAACAACCAACA
ACCAACAACCAACAACCAAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MAKGEETRQFIIEKAAPIFNTKGIAATSMSDIMEATKLSKGSMYVHFENKEVLACAAVDHNMKILSSKLQNALSGSSTSK
EALFAYIDFFSNPTHPPVIGGCPLLNFGTEADDTNPIVKEKVNSAIKQGQQLLSGIIEKGIANKEFKKDFNPSEFATAMF
AMLEGGHLMARVSGSNDKMEIVAKTLKNLIEQNTI

Sequences:

>Translated_195_residues
MAKGEETRQFIIEKAAPIFNTKGIAATSMSDIMEATKLSKGSMYVHFENKEVLACAAVDHNMKILSSKLQNALSGSSTSK
EALFAYIDFFSNPTHPPVIGGCPLLNFGTEADDTNPIVKEKVNSAIKQGQQLLSGIIEKGIANKEFKKDFNPSEFATAMF
AMLEGGHLMARVSGSNDKMEIVAKTLKNLIEQNTI
>Mature_194_residues
AKGEETRQFIIEKAAPIFNTKGIAATSMSDIMEATKLSKGSMYVHFENKEVLACAAVDHNMKILSSKLQNALSGSSTSKE
ALFAYIDFFSNPTHPPVIGGCPLLNFGTEADDTNPIVKEKVNSAIKQGQQLLSGIIEKGIANKEFKKDFNPSEFATAMFA
MLEGGHLMARVSGSNDKMEIVAKTLKNLIEQNTI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693141, Length=192, Percent_Identity=23.9583333333333, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21178; Mature: 21046

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGEETRQFIIEKAAPIFNTKGIAATSMSDIMEATKLSKGSMYVHFENKEVLACAAVDH
CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCC
NMKILSSKLQNALSGSSTSKEALFAYIDFFSNPTHPPVIGGCPLLNFGTEADDTNPIVKE
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
KVNSAIKQGQQLLSGIIEKGIANKEFKKDFNPSEFATAMFAMLEGGHLMARVSGSNDKME
HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHH
IVAKTLKNLIEQNTI
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKGEETRQFIIEKAAPIFNTKGIAATSMSDIMEATKLSKGSMYVHFENKEVLACAAVDH
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCC
NMKILSSKLQNALSGSSTSKEALFAYIDFFSNPTHPPVIGGCPLLNFGTEADDTNPIVKE
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
KVNSAIKQGQQLLSGIIEKGIANKEFKKDFNPSEFATAMFAMLEGGHLMARVSGSNDKME
HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHH
IVAKTLKNLIEQNTI
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10475962; 12004073 [H]