| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301034
Identifier: 146301034
GI number: 146301034
Start: 3932810
End: 3934024
Strand: Direct
Name: 146301034
Synonym: Fjoh_3290
Alternate gene names: NA
Gene position: 3932810-3934024 (Clockwise)
Preceding gene: 146301033
Following gene: 146301035
Centisome position: 64.51
GC content: 35.8
Gene sequence:
>1215_bases ATGACTAAAACTTATTTCAAACTGATTTTCTTATTTGCTTTATCGCTTTTTGCCGTTTCCTGCAGCAATGATGACGATAC CACTCCTGAAACTCCGGATGAAGCATTAACGGAATTTAAATATCTGAGAATTTTACTTTCTGATGAAAAAACTACACAGC TTACGCTTGTAAATCCGGTTGATGCCACATCTTCTTTCTTTAATGCTAAATTCGCAAAATCTTCACTTTATACAACCGAA TCCGGACGATATGCAGGAATTGTTCACAGACTGGATAATACGGTAGAAACTTTTGACAGCGGATTTGAAAGCCACGGCGA TCATGTTGATGTTGACGGACAACCGCAATTTGGTGCTTTAACTGGACAATCGGCTCTTCCAACGCATTTTAAAAGTAAAA TTGGAGAAATCCTGACTTTTAATGATGGTGACGGAACTTTATCTGTTGCAAAAGAAAAGGATGTAAATACTGCTGGGGCG CAGTTCAAAACCATCAACGCCGGACTTTTGGCACATCATGGTGCTATGGCCGCTTTTGGAAACGGAACGTATGCTATTAC AGTAAAAGATAATTCGGTTACAGGGACTCTTCCTGAAAAAGTAAAAATTATTGATAATACAGGTAAAACTTTATTTGAAC CGACTCTTGCTACAAAGGGAATTCATGGAAATGCTTCTGACGGAACTTATGCCGTTTTTGGTTCTGCAAGCGGTGTTTTA GTTGTAGAAAATAACGGAAAACAAAAACTGATTGCTTTTCCAGAAGATTTTGGAACAGCTTGGTTTGGAACTATTTTAGA AACAGATTACAACGGAAAATTTGTTGGTTTTACTGCCGCAAAAGGTGCATATTTAATTGATGTTGTAAATGGAACTATAA AACCTATTATCCAAAACACAACTATTATGCAGTGCAAAGTAAGTTACAACCATAAAAAATTAGGTGTTTTACTGCATTCA GGTGAATTTAAGTTATTTAACCTAAACAGTCTGCAGGTTGAAAAAGAAGCTAAAATTATTGGTGAAACTGCAAACGATGC AGCATTAAAACCGCAAATACAGTTAACTGAGCACTTTGCTTACATTACTTCTCCATCAACAGGAGAATTGTTACAATTGA GTTTTGAAAAAATGTCAATTGTAAATAAAATCAAAGTTTCGAACACACCTTATATGATTACAATTCTGGGGTTTGAAAAT AGTGAAAGCCATTAA
Upstream 100 bases:
>100_bases GTACAAAAATACTTCTTACAACATGAGCGTCTATAAATCGATGCCTATTACAATAAACTTTTAAAATCAAGTAAATATTA ACCCTAAATACATTTTAACG
Downstream 100 bases:
>100_bases AAATAAGGCTTAAGCTATTGGAAAAGCGTGCTTAACGGCACGCTTTTTTTGGGGTTTAAAATATCCTAAAAATAAAAAAG TTTAAAAATATTTGTTTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MTKTYFKLIFLFALSLFAVSCSNDDDTTPETPDEALTEFKYLRILLSDEKTTQLTLVNPVDATSSFFNAKFAKSSLYTTE SGRYAGIVHRLDNTVETFDSGFESHGDHVDVDGQPQFGALTGQSALPTHFKSKIGEILTFNDGDGTLSVAKEKDVNTAGA QFKTINAGLLAHHGAMAAFGNGTYAITVKDNSVTGTLPEKVKIIDNTGKTLFEPTLATKGIHGNASDGTYAVFGSASGVL VVENNGKQKLIAFPEDFGTAWFGTILETDYNGKFVGFTAAKGAYLIDVVNGTIKPIIQNTTIMQCKVSYNHKKLGVLLHS GEFKLFNLNSLQVEKEAKIIGETANDAALKPQIQLTEHFAYITSPSTGELLQLSFEKMSIVNKIKVSNTPYMITILGFEN SESH
Sequences:
>Translated_404_residues MTKTYFKLIFLFALSLFAVSCSNDDDTTPETPDEALTEFKYLRILLSDEKTTQLTLVNPVDATSSFFNAKFAKSSLYTTE SGRYAGIVHRLDNTVETFDSGFESHGDHVDVDGQPQFGALTGQSALPTHFKSKIGEILTFNDGDGTLSVAKEKDVNTAGA QFKTINAGLLAHHGAMAAFGNGTYAITVKDNSVTGTLPEKVKIIDNTGKTLFEPTLATKGIHGNASDGTYAVFGSASGVL VVENNGKQKLIAFPEDFGTAWFGTILETDYNGKFVGFTAAKGAYLIDVVNGTIKPIIQNTTIMQCKVSYNHKKLGVLLHS GEFKLFNLNSLQVEKEAKIIGETANDAALKPQIQLTEHFAYITSPSTGELLQLSFEKMSIVNKIKVSNTPYMITILGFEN SESH >Mature_403_residues TKTYFKLIFLFALSLFAVSCSNDDDTTPETPDEALTEFKYLRILLSDEKTTQLTLVNPVDATSSFFNAKFAKSSLYTTES GRYAGIVHRLDNTVETFDSGFESHGDHVDVDGQPQFGALTGQSALPTHFKSKIGEILTFNDGDGTLSVAKEKDVNTAGAQ FKTINAGLLAHHGAMAAFGNGTYAITVKDNSVTGTLPEKVKIIDNTGKTLFEPTLATKGIHGNASDGTYAVFGSASGVLV VENNGKQKLIAFPEDFGTAWFGTILETDYNGKFVGFTAAKGAYLIDVVNGTIKPIIQNTTIMQCKVSYNHKKLGVLLHSG EFKLFNLNSLQVEKEAKIIGETANDAALKPQIQLTEHFAYITSPSTGELLQLSFEKMSIVNKIKVSNTPYMITILGFENS ESH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43794; Mature: 43663
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTYFKLIFLFALSLFAVSCSNDDDTTPETPDEALTEFKYLRILLSDEKTTQLTLVNPV CCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEEECCC DATSSFFNAKFAKSSLYTTESGRYAGIVHRLDNTVETFDSGFESHGDHVDVDGQPQFGAL CCCHHHHHHHHCCCCEEEECCCCEEEEHHHHCCHHHHHHCCHHCCCCEEECCCCCCCCEE TGQSALPTHFKSKIGEILTFNDGDGTLSVAKEKDVNTAGAQFKTINAGLLAHHGAMAAFG CCCCCCCHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEECCCCEEEEC NGTYAITVKDNSVTGTLPEKVKIIDNTGKTLFEPTLATKGIHGNASDGTYAVFGSASGVL CCEEEEEEECCCEECCCCCEEEEEECCCCEEECCHHHCCCCCCCCCCCEEEEEECCCCEE VVENNGKQKLIAFPEDFGTAWFGTILETDYNGKFVGFTAAKGAYLIDVVNGTIKPIIQNT EEECCCCEEEEECCCCCCCHHEEHEEEECCCCEEEEEEECCCEEEEEECCCCEEEEECCC TIMQCKVSYNHKKLGVLLHSGEFKLFNLNSLQVEKEAKIIGETANDAALKPQIQLTEHFA EEEEEEEECCCEEEEEEEECCCEEEEECCCEEEECCHHEECCCCCCCCCCCEEEEEEEEE YITSPSTGELLQLSFEKMSIVNKIKVSNTPYMITILGFENSESH EEECCCCCCEEEEEHHHHHHHHEEEECCCCEEEEEEEECCCCCC >Mature Secondary Structure TKTYFKLIFLFALSLFAVSCSNDDDTTPETPDEALTEFKYLRILLSDEKTTQLTLVNPV CHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEEECCC DATSSFFNAKFAKSSLYTTESGRYAGIVHRLDNTVETFDSGFESHGDHVDVDGQPQFGAL CCCHHHHHHHHCCCCEEEECCCCEEEEHHHHCCHHHHHHCCHHCCCCEEECCCCCCCCEE TGQSALPTHFKSKIGEILTFNDGDGTLSVAKEKDVNTAGAQFKTINAGLLAHHGAMAAFG CCCCCCCHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEECCCCEEEEC NGTYAITVKDNSVTGTLPEKVKIIDNTGKTLFEPTLATKGIHGNASDGTYAVFGSASGVL CCEEEEEEECCCEECCCCCEEEEEECCCCEEECCHHHCCCCCCCCCCCEEEEEECCCCEE VVENNGKQKLIAFPEDFGTAWFGTILETDYNGKFVGFTAAKGAYLIDVVNGTIKPIIQNT EEECCCCEEEEECCCCCCCHHEEHEEEECCCCEEEEEEECCCEEEEEECCCCEEEEECCC TIMQCKVSYNHKKLGVLLHSGEFKLFNLNSLQVEKEAKIIGETANDAALKPQIQLTEHFA EEEEEEEECCCEEEEEEEECCCEEEEECCCEEEECCHHEECCCCCCCCCCCEEEEEEEEE YITSPSTGELLQLSFEKMSIVNKIKVSNTPYMITILGFENSESH EEECCCCCCEEEEEHHHHHHHHEEEECCCCEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA