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The map label for this gene is aer [H]

Identifier: 146300280

GI number: 146300280

Start: 3009488

End: 3010114

Strand: Direct

Name: aer [H]

Synonym: Fjoh_2525

Alternate gene names: 146300280

Gene position: 3009488-3010114 (Clockwise)

Preceding gene: 146300278

Following gene: 146300281

Centisome position: 49.36

GC content: 32.22

Gene sequence:

>627_bases
ATGAATCAAGAAAATCAACTTCGAACACCAGTTACAGTTATTGATAAAGAAGTTACTTGGGATAAAACGCAGGTAATTAT
GAGCAAAACAAATGCTTTTGGTATTATTGAATATGCCAATGAAGTTTTTGTTGACGTTTGTGGTTACGAAGATTATGAGT
TAATGGGACAGCCGCATAACATTATTCGTCATCCGGATATGCCAAAAGTTATTTTTAAAGTCCTGTGGGAAAATCTTAAA
AACGGAAAAAACTTTCATGCAATAGTAAAAAACTTAGCTAAATCTGGAAGATACTATTGGGTTATAACTGACTTTGATAT
CGCCAGAGACGAAAATGGAGTTATTGTAAACTACTTTGGAAGAAGACAAGCCGTTCCGCAAGAGGTTGTTACAATGCATA
TTGAACCATTATATAAAAAACTGCTTCAAATTGAAGCAGCAAGCGGAGTAGAATTTAGTGAAAAATACCTAATAGGTTTC
TTAGAAGAAAAAAAGAGAACTTATGTAGAATATATTAAAGAGTTAATTTTTGAGCACGAAAAAGCACAAGCAAAATTTGC
TCATTATGAAGAAGAACAAGATACTGAAGAACACAAAGGTTTTTTCAGCAGATTATTTAATAGATAG

Upstream 100 bases:

>100_bases
GTCAGATTTTGCACTTTTTCTTCTCTCTACTTTTGTGTAATTAATTCTTACAAACCAGAATTAAAAAATCCAATCCAAAA
ACATATTAAATTTACGAGAC

Downstream 100 bases:

>100_bases
AATAAAGTTTTAGTTTTTAAATATTTAGGTTCGGGTCCGTTTTGAGTTCGCTCAAGGCGGACCTTTTGGGTTAAATAATT
AAGAGATTAAATTATGGACT

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MNQENQLRTPVTVIDKEVTWDKTQVIMSKTNAFGIIEYANEVFVDVCGYEDYELMGQPHNIIRHPDMPKVIFKVLWENLK
NGKNFHAIVKNLAKSGRYYWVITDFDIARDENGVIVNYFGRRQAVPQEVVTMHIEPLYKKLLQIEAASGVEFSEKYLIGF
LEEKKRTYVEYIKELIFEHEKAQAKFAHYEEEQDTEEHKGFFSRLFNR

Sequences:

>Translated_208_residues
MNQENQLRTPVTVIDKEVTWDKTQVIMSKTNAFGIIEYANEVFVDVCGYEDYELMGQPHNIIRHPDMPKVIFKVLWENLK
NGKNFHAIVKNLAKSGRYYWVITDFDIARDENGVIVNYFGRRQAVPQEVVTMHIEPLYKKLLQIEAASGVEFSEKYLIGF
LEEKKRTYVEYIKELIFEHEKAQAKFAHYEEEQDTEEHKGFFSRLFNR
>Mature_208_residues
MNQENQLRTPVTVIDKEVTWDKTQVIMSKTNAFGIIEYANEVFVDVCGYEDYELMGQPHNIIRHPDMPKVIFKVLWENLK
NGKNFHAIVKNLAKSGRYYWVITDFDIARDENGVIVNYFGRRQAVPQEVVTMHIEPLYKKLLQIEAASGVEFSEKYLIGF
LEEKKRTYVEYIKELIFEHEKAQAKFAHYEEEQDTEEHKGFFSRLFNR

Specific function: Signal transducer for aerotaxis. The aerotactic response is the accumulation of cells around air bubbles. The nature of the sensory stimulus detected by this protein is the proton motive force or cellular redox state. It uses a FAD prosthetic group as a r

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=117, Percent_Identity=43.5897435897436, Blast_Score=98, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF08447 PAS_3 [H]

EC number: NA

Molecular weight: Translated: 24607; Mature: 24607

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQENQLRTPVTVIDKEVTWDKTQVIMSKTNAFGIIEYANEVFVDVCGYEDYELMGQPHN
CCCCCCCCCCHHEECCCCCCCHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCHHHCCCCCH
IIRHPDMPKVIFKVLWENLKNGKNFHAIVKNLAKSGRYYWVITDFDIARDENGVIVNYFG
HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEECEECCCCCCEEEEECC
RRQAVPQEVVTMHIEPLYKKLLQIEAASGVEFSEKYLIGFLEEKKRTYVEYIKELIFEHE
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAQAKFAHYEEEQDTEEHKGFFSRLFNR
HHHHHHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQENQLRTPVTVIDKEVTWDKTQVIMSKTNAFGIIEYANEVFVDVCGYEDYELMGQPHN
CCCCCCCCCCHHEECCCCCCCHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCHHHCCCCCH
IIRHPDMPKVIFKVLWENLKNGKNFHAIVKNLAKSGRYYWVITDFDIARDENGVIVNYFG
HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEECEECCCCCCEEEEECC
RRQAVPQEVVTMHIEPLYKKLLQIEAASGVEFSEKYLIGFLEEKKRTYVEYIKELIFEHE
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAQAKFAHYEEEQDTEEHKGFFSRLFNR
HHHHHHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 9190831; 9380671 [H]