| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is bfrD [H]
Identifier: 146300035
GI number: 146300035
Start: 2750311
End: 2752539
Strand: Reverse
Name: bfrD [H]
Synonym: Fjoh_2280
Alternate gene names: 146300035
Gene position: 2752539-2750311 (Counterclockwise)
Preceding gene: 146300036
Following gene: 146300034
Centisome position: 45.15
GC content: 35.04
Gene sequence:
>2229_bases ATGAAATATAATTTACTATTTGTCTTAGGATTATTAAGTTTCGTCTCTTACGGCCAGAGTTATTCAAATAATGAATCTGG AGCTTCTGTTACAGATACTGTAAAGGGCAAAAAAGGAGAAATATTAAACGAAGTAATTGTTACTAAAAACAAAGAGCCAA AACCGGTAACAGCAGTTCGCTCTGGATTAAAACCAATGGATAATCCGCAAACCATACAAGTTATTGGTTCTGAAGTTATC GAACAACAGCAGGCTATCAGATTAAGTGAAGTTCTTAAAAATGCCAACGGTGTTTATGTTGGTTCTGCGCGAGGCGGTGC TCAGGAATCTTTCTTTTCTAGAGGTTATGATTTATCTGCCAATAATATGTTTAAAAACGGATTCCGTTACAATTCTGGAT CAATTCCTGATGTTTCTGGTTTAGACAAAGTAGAATTTCTAAAAGGAGGTTCTGCCCTATTATTTGGAAATGTTGCTCCG GGAGGAATCGTTAACCTGGTAACCAAAACTCCTCAATTTAAAAGTGGCGGCGAAGTATCGATGCAGATAGGAAGTTTTGC GTATTACAAACCTGCTTTTGATTTTTACGGTGGTTTAAGTAAATCAGTCGCTTTTAGAATTAATGGTTCTTACGAAAATT CAGAAAGCTTTAGAGATGTAGTAAAAAACGAACGTTTATACATTAACCCATCGCTGCTTTTTGTAATTAATCCTAAAACA CAAATTACGCTTCAGGGAGATTATTTATCAGCAGACTGGACTCCTGATTTCGGAACAGGAATTATTGGAACAAAAATTCT AGATTTACCTCGTAATACTTTTTACGGATCACTTTGGTCAAATGGTACTACTAAATCTTCCAGCGCTTCTGTATTATTAA ATCATGATTTTAATAAAAACTGGAAACTTAATTTCAATAGTTCTTTCCAAAATTACGATAGAGCTTCAAAATCTACAGCA CAATTATCATCTGTTAAAGATAATGGAGAATGGACTAGACCATTGGTTCAAAACGAAAACCTGGAACAAATATTAGGAGA TCAGATAAGTCTTCAGGGGAACTTTAACACTGGATCTGTAAAGCATCAGATATTTACAGGTGCTGACTGGGAAAACTCAT TTGCAACAGCTTATACTTTTGCATTTGACCCTGCAAATTATGACACTATTAATCTTTTCAATTTTGATCCGTCAACGCAA AAAAATACTATTCCGGATGCCAGAACAACTCAAATTGCAAAAACAGAAACAAATCGTTTTGGGGTTTATTTTCAGGATTT GATTTCTATTACAGACAAATTCAAAGTATTGGCAGGTGTAAGATGGTCATGGCAGGAAGCTGAAGTTACGACTTACAAAG AAGTTTATGCCAATAAAGTGCAAAACGTTAAACCTGAAAATGCAGTTCAAACAGTTGGTGCTAAAAAATTAGACAACGCA TTTTCTCCAAAATTTGGATTAATTTATCAGCCAAGAAAAGATATTTCTATCTTTGGAAGTTATTCTACTTCATTTACTCC AAACACGGGAACTACAGCTGATTTAAAACCAATTGAGCCATCTATTATTGATCAGTATGAAGCTGGTATTAAAACTGATT TCTTAGAAGGAATGCTAAGCACCAATGTTACAGTTTATCAAATCGTAAACAGCAATCTGGCGCAAACAGCTGAATTTAAA GCTGACGGAAGTTTAAACTCAGATACTAACGTAAAAGTATTAAGCGGAGAAACTAAAAGTAAAGGTATTGAAGTAGACGT TACTGCAAGACCAATTGAAGGACTTAGCATTATTGCTGGTTACAGTTACAATGATATGCGTTATACTAAAACATCTGGTT TAAACGGAAGTTTTATAGAAGGTGACCGTCTTGTTAGAACTCCTGCCAATACTGCAAATTTAAGTTTCTATTACCTAGTT CCTGAAGGTTTCTTTAAAGGAGTTTCTATAGGAGCGATTGGAAACTATATTGGTGACCGTTTTGGAGGCTGGAATGATCA ATACAGCACAGATCTTGTCAAATATCCTGATGGTATCTACCACAGAGAAATACCTATTGATGGTTACACAACTATTGATG TTTCAGCTGGATATACATGGAGAAAATTCTCTATTCTTTGCAAACTATCAAACATTACAAACGAGTTAAATTATACTGTT CACGAAAACTACAGTGTAAACCCAATTGCTCCTCGCCAAGTTATGACAAGCCTGCGATACAAGTTCTAA
Upstream 100 bases:
>100_bases AGTAAGGTTTAAGGAAGAAAAGCACTTCTTAATTTCCTGTTAAAGAAGATGTGTATTTATATTTGCATTCGATAATTTTT ATTGAATCTAAATAAATACC
Downstream 100 bases:
>100_bases AATATTGAATTAGAGTTTTGATTTTATCCCAAGATTTTCAGTTTCACTAGAAAATCTTGGGATTTTTATTTTAAGCTCAA TTATAATTCAATTAACACTA
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]
Number of amino acids: Translated: 742; Mature: 742
Protein sequence:
>742_residues MKYNLLFVLGLLSFVSYGQSYSNNESGASVTDTVKGKKGEILNEVIVTKNKEPKPVTAVRSGLKPMDNPQTIQVIGSEVI EQQQAIRLSEVLKNANGVYVGSARGGAQESFFSRGYDLSANNMFKNGFRYNSGSIPDVSGLDKVEFLKGGSALLFGNVAP GGIVNLVTKTPQFKSGGEVSMQIGSFAYYKPAFDFYGGLSKSVAFRINGSYENSESFRDVVKNERLYINPSLLFVINPKT QITLQGDYLSADWTPDFGTGIIGTKILDLPRNTFYGSLWSNGTTKSSSASVLLNHDFNKNWKLNFNSSFQNYDRASKSTA QLSSVKDNGEWTRPLVQNENLEQILGDQISLQGNFNTGSVKHQIFTGADWENSFATAYTFAFDPANYDTINLFNFDPSTQ KNTIPDARTTQIAKTETNRFGVYFQDLISITDKFKVLAGVRWSWQEAEVTTYKEVYANKVQNVKPENAVQTVGAKKLDNA FSPKFGLIYQPRKDISIFGSYSTSFTPNTGTTADLKPIEPSIIDQYEAGIKTDFLEGMLSTNVTVYQIVNSNLAQTAEFK ADGSLNSDTNVKVLSGETKSKGIEVDVTARPIEGLSIIAGYSYNDMRYTKTSGLNGSFIEGDRLVRTPANTANLSFYYLV PEGFFKGVSIGAIGNYIGDRFGGWNDQYSTDLVKYPDGIYHREIPIDGYTTIDVSAGYTWRKFSILCKLSNITNELNYTV HENYSVNPIAPRQVMTSLRYKF
Sequences:
>Translated_742_residues MKYNLLFVLGLLSFVSYGQSYSNNESGASVTDTVKGKKGEILNEVIVTKNKEPKPVTAVRSGLKPMDNPQTIQVIGSEVI EQQQAIRLSEVLKNANGVYVGSARGGAQESFFSRGYDLSANNMFKNGFRYNSGSIPDVSGLDKVEFLKGGSALLFGNVAP GGIVNLVTKTPQFKSGGEVSMQIGSFAYYKPAFDFYGGLSKSVAFRINGSYENSESFRDVVKNERLYINPSLLFVINPKT QITLQGDYLSADWTPDFGTGIIGTKILDLPRNTFYGSLWSNGTTKSSSASVLLNHDFNKNWKLNFNSSFQNYDRASKSTA QLSSVKDNGEWTRPLVQNENLEQILGDQISLQGNFNTGSVKHQIFTGADWENSFATAYTFAFDPANYDTINLFNFDPSTQ KNTIPDARTTQIAKTETNRFGVYFQDLISITDKFKVLAGVRWSWQEAEVTTYKEVYANKVQNVKPENAVQTVGAKKLDNA FSPKFGLIYQPRKDISIFGSYSTSFTPNTGTTADLKPIEPSIIDQYEAGIKTDFLEGMLSTNVTVYQIVNSNLAQTAEFK ADGSLNSDTNVKVLSGETKSKGIEVDVTARPIEGLSIIAGYSYNDMRYTKTSGLNGSFIEGDRLVRTPANTANLSFYYLV PEGFFKGVSIGAIGNYIGDRFGGWNDQYSTDLVKYPDGIYHREIPIDGYTTIDVSAGYTWRKFSILCKLSNITNELNYTV HENYSVNPIAPRQVMTSLRYKF >Mature_742_residues MKYNLLFVLGLLSFVSYGQSYSNNESGASVTDTVKGKKGEILNEVIVTKNKEPKPVTAVRSGLKPMDNPQTIQVIGSEVI EQQQAIRLSEVLKNANGVYVGSARGGAQESFFSRGYDLSANNMFKNGFRYNSGSIPDVSGLDKVEFLKGGSALLFGNVAP GGIVNLVTKTPQFKSGGEVSMQIGSFAYYKPAFDFYGGLSKSVAFRINGSYENSESFRDVVKNERLYINPSLLFVINPKT QITLQGDYLSADWTPDFGTGIIGTKILDLPRNTFYGSLWSNGTTKSSSASVLLNHDFNKNWKLNFNSSFQNYDRASKSTA QLSSVKDNGEWTRPLVQNENLEQILGDQISLQGNFNTGSVKHQIFTGADWENSFATAYTFAFDPANYDTINLFNFDPSTQ KNTIPDARTTQIAKTETNRFGVYFQDLISITDKFKVLAGVRWSWQEAEVTTYKEVYANKVQNVKPENAVQTVGAKKLDNA FSPKFGLIYQPRKDISIFGSYSTSFTPNTGTTADLKPIEPSIIDQYEAGIKTDFLEGMLSTNVTVYQIVNSNLAQTAEFK ADGSLNSDTNVKVLSGETKSKGIEVDVTARPIEGLSIIAGYSYNDMRYTKTSGLNGSFIEGDRLVRTPANTANLSFYYLV PEGFFKGVSIGAIGNYIGDRFGGWNDQYSTDLVKYPDGIYHREIPIDGYTTIDVSAGYTWRKFSILCKLSNITNELNYTV HENYSVNPIAPRQVMTSLRYKF
Specific function: Probably involved in iron transport [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787024, Length=728, Percent_Identity=23.3516483516484, Blast_Score=136, Evalue=5e-33, Organism=Escherichia coli, GI1786344, Length=642, Percent_Identity=24.4548286604361, Blast_Score=122, Evalue=9e-29, Organism=Escherichia coli, GI1787344, Length=584, Percent_Identity=21.7465753424658, Blast_Score=93, Evalue=6e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 82137; Mature: 82137
Theoretical pI: Translated: 7.57; Mature: 7.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYNLLFVLGLLSFVSYGQSYSNNESGASVTDTVKGKKGEILNEVIVTKNKEPKPVTAVR CCEEHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCHHHHH SGLKPMDNPQTIQVIGSEVIEQQQAIRLSEVLKNANGVYVGSARGGAQESFFSRGYDLSA HCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCC NNMFKNGFRYNSGSIPDVSGLDKVEFLKGGSALLFGNVAPGGIVNLVTKTPQFKSGGEVS CCHHCCCEEECCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEE MQIGSFAYYKPAFDFYGGLSKSVAFRINGSYENSESFRDVVKNERLYINPSLLFVINPKT EEECCEEEECCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCEEEECCEEEEEECCCE QITLQGDYLSADWTPDFGTGIIGTKILDLPRNTFYGSLWSNGTTKSSSASVLLNHDFNKN EEEEECCEEECCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCEEEEECCCCCC WKLNFNSSFQNYDRASKSTAQLSSVKDNGEWTRPLVQNENLEQILGDQISLQGNFNTGSV EEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCE KHQIFTGADWENSFATAYTFAFDPANYDTINLFNFDPSTQKNTIPDARTTQIAKTETNRF EEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCC GVYFQDLISITDKFKVLAGVRWSWQEAEVTTYKEVYANKVQNVKPENAVQTVGAKKLDNA CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHC FSPKFGLIYQPRKDISIFGSYSTSFTPNTGTTADLKPIEPSIIDQYEAGIKTDFLEGMLS CCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH TNVTVYQIVNSNLAQTAEFKADGSLNSDTNVKVLSGETKSKGIEVDVTARPIEGLSIIAG CCCEEEEEECCCHHHHHEECCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEE YSYNDMRYTKTSGLNGSFIEGDRLVRTPANTANLSFYYLVPEGFFKGVSIGAIGNYIGDR CCCCCEEEEECCCCCCCEECCCEEEECCCCCCEEEEEEEECCCCCCCEEEHHHHHHHHHH FGGWNDQYSTDLVKYPDGIYHREIPIDGYTTIDVSAGYTWRKFSILCKLSNITNELNYTV CCCCCCCCCCCCEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEECHHCCCCEEEE HENYSVNPIAPRQVMTSLRYKF ECCCCCCCCCHHHHHHHHHCCC >Mature Secondary Structure MKYNLLFVLGLLSFVSYGQSYSNNESGASVTDTVKGKKGEILNEVIVTKNKEPKPVTAVR CCEEHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCHHHHH SGLKPMDNPQTIQVIGSEVIEQQQAIRLSEVLKNANGVYVGSARGGAQESFFSRGYDLSA HCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCC NNMFKNGFRYNSGSIPDVSGLDKVEFLKGGSALLFGNVAPGGIVNLVTKTPQFKSGGEVS CCHHCCCEEECCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEE MQIGSFAYYKPAFDFYGGLSKSVAFRINGSYENSESFRDVVKNERLYINPSLLFVINPKT EEECCEEEECCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCEEEECCEEEEEECCCE QITLQGDYLSADWTPDFGTGIIGTKILDLPRNTFYGSLWSNGTTKSSSASVLLNHDFNKN EEEEECCEEECCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCEEEEECCCCCC WKLNFNSSFQNYDRASKSTAQLSSVKDNGEWTRPLVQNENLEQILGDQISLQGNFNTGSV EEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCE KHQIFTGADWENSFATAYTFAFDPANYDTINLFNFDPSTQKNTIPDARTTQIAKTETNRF EEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCC GVYFQDLISITDKFKVLAGVRWSWQEAEVTTYKEVYANKVQNVKPENAVQTVGAKKLDNA CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHC FSPKFGLIYQPRKDISIFGSYSTSFTPNTGTTADLKPIEPSIIDQYEAGIKTDFLEGMLS CCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH TNVTVYQIVNSNLAQTAEFKADGSLNSDTNVKVLSGETKSKGIEVDVTARPIEGLSIIAG CCCEEEEEECCCHHHHHEECCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEE YSYNDMRYTKTSGLNGSFIEGDRLVRTPANTANLSFYYLVPEGFFKGVSIGAIGNYIGDR CCCCCEEEEECCCCCCCEECCCEEEECCCCCCEEEEEEEECCCCCCCEEEHHHHHHHHHH FGGWNDQYSTDLVKYPDGIYHREIPIDGYTTIDVSAGYTWRKFSILCKLSNITNELNYTV CCCCCCCCCCCCEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEECHHCCCCEEEE HENYSVNPIAPRQVMTSLRYKF ECCCCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12910271; 10079522 [H]