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The map label for this gene is nusB [H]

Identifier: 146299958

GI number: 146299958

Start: 2656555

End: 2657466

Strand: Direct

Name: nusB [H]

Synonym: Fjoh_2202

Alternate gene names: 146299958

Gene position: 2656555-2657466 (Clockwise)

Preceding gene: 146299957

Following gene: 146299959

Centisome position: 43.57

GC content: 29.82

Gene sequence:

>912_bases
ATGCAGTCCATTTATGCAATGCATCAAAGCGGTTCTGATAATATGGAAAAAGAAGAAAAATTTCTTTTCTACAGTATTGA
TAATATTCAGGACTTATATCTGATAATGCTTTCTTCATTGATTGAAATATGCAAAAAAGAATCAGTTTTTTTACATCTAT
CAAGCAAAAAACATCTTGCAACTCCAGCAGAACGTAATCCGAACGAAAAGTTCGTTAAAAACAAAATCTTTCAGCTTCTT
GCGGAAAGTAATTCCCTTAGCATTGCTTTAGAAAACCGTAAAATCAACAACTGGTCATTAAATGATGATTATATTATTTT
GCTTTTAAATGATATTAAAGCAAGTGATATTTACAAAAAGTATATGAGCAATAATGTCAATACTTTTGAAGAAGACAAAC
AGTTTATTGCTGATTTATTTGCTGAAGTTATTGTTCCAAATGATAAATTATATGAGTATTTAGAGGATGATAAATTAACT
TGGGTTGATGATATTCCGGTTGTAAATACGCATATTATTAAGCAGTTAAAAGCAATTAAAACTGATAATCCAGACGAATT
TAGAGTTCCTAAATTGTATAAGGATGTTGAGGATAAAGATTTTGCAAAAGATTTATTTAGAAGAACTGTTTTAAACGAGG
CTGTTTTAGCAAAAGAATACGACGATAAAACCCCAAATTGGGACAGTGAAAGGATTGCTGAAATTGATACAATTATCCTG
AAAATGGCAATTTGCGAATTCTTAAAATTCCCTTCGATTCCTGTAAAAGTAACTCTTAACGAATATTTAGAAATTGCAAA
AGAGTATTCTACGCCAAAAAGCAGTATTTTTATCAACGGAATTTTAGATAATCTTGTAAAAGAACTTGAAGCCAGTAAAA
AAATGGTGAAAGTGGGAAGAGGGTTAATGTAA

Upstream 100 bases:

>100_bases
GAATTAATTTTAATATCAGGATTGAAATTCCTAATTTTGCAGACTAATTTTTAAATGTTCTTACGAGGTGGTAAATAGAA
GACACATACGCATTAAAGTA

Downstream 100 bases:

>100_bases
TTTTAGAAGAAATTCCAGTTTTAGAATAGAAAATTCCAAAAAGAAAATATTAATATAAATCAAAAACAGAATTTAATTAT
GGGACAATTAAGTCAATTTG

Product: transcription termination factor-like protein

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MQSIYAMHQSGSDNMEKEEKFLFYSIDNIQDLYLIMLSSLIEICKKESVFLHLSSKKHLATPAERNPNEKFVKNKIFQLL
AESNSLSIALENRKINNWSLNDDYIILLLNDIKASDIYKKYMSNNVNTFEEDKQFIADLFAEVIVPNDKLYEYLEDDKLT
WVDDIPVVNTHIIKQLKAIKTDNPDEFRVPKLYKDVEDKDFAKDLFRRTVLNEAVLAKEYDDKTPNWDSERIAEIDTIIL
KMAICEFLKFPSIPVKVTLNEYLEIAKEYSTPKSSIFINGILDNLVKELEASKKMVKVGRGLM

Sequences:

>Translated_303_residues
MQSIYAMHQSGSDNMEKEEKFLFYSIDNIQDLYLIMLSSLIEICKKESVFLHLSSKKHLATPAERNPNEKFVKNKIFQLL
AESNSLSIALENRKINNWSLNDDYIILLLNDIKASDIYKKYMSNNVNTFEEDKQFIADLFAEVIVPNDKLYEYLEDDKLT
WVDDIPVVNTHIIKQLKAIKTDNPDEFRVPKLYKDVEDKDFAKDLFRRTVLNEAVLAKEYDDKTPNWDSERIAEIDTIIL
KMAICEFLKFPSIPVKVTLNEYLEIAKEYSTPKSSIFINGILDNLVKELEASKKMVKVGRGLM
>Mature_303_residues
MQSIYAMHQSGSDNMEKEEKFLFYSIDNIQDLYLIMLSSLIEICKKESVFLHLSSKKHLATPAERNPNEKFVKNKIFQLL
AESNSLSIALENRKINNWSLNDDYIILLLNDIKASDIYKKYMSNNVNTFEEDKQFIADLFAEVIVPNDKLYEYLEDDKLT
WVDDIPVVNTHIIKQLKAIKTDNPDEFRVPKLYKDVEDKDFAKDLFRRTVLNEAVLAKEYDDKTPNWDSERIAEIDTIIL
KMAICEFLKFPSIPVKVTLNEYLEIAKEYSTPKSSIFINGILDNLVKELEASKKMVKVGRGLM

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 35242; Mature: 35242

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSIYAMHQSGSDNMEKEEKFLFYSIDNIQDLYLIMLSSLIEICKKESVFLHLSSKKHLA
CCCHHHHHCCCCCCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
TPAERNPNEKFVKNKIFQLLAESNSLSIALENRKINNWSLNDDYIILLLNDIKASDIYKK
CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHH
YMSNNVNTFEEDKQFIADLFAEVIVPNDKLYEYLEDDKLTWVDDIPVVNTHIIKQLKAIK
HHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHC
TDNPDEFRVPKLYKDVEDKDFAKDLFRRTVLNEAVLAKEYDDKTPNWDSERIAEIDTIIL
CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
KMAICEFLKFPSIPVKVTLNEYLEIAKEYSTPKSSIFINGILDNLVKELEASKKMVKVGR
HHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCHHHEEHHHHHHHHHHHHHHHHHHHHHCC
GLM
CCC
>Mature Secondary Structure
MQSIYAMHQSGSDNMEKEEKFLFYSIDNIQDLYLIMLSSLIEICKKESVFLHLSSKKHLA
CCCHHHHHCCCCCCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
TPAERNPNEKFVKNKIFQLLAESNSLSIALENRKINNWSLNDDYIILLLNDIKASDIYKK
CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHH
YMSNNVNTFEEDKQFIADLFAEVIVPNDKLYEYLEDDKLTWVDDIPVVNTHIIKQLKAIK
HHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHC
TDNPDEFRVPKLYKDVEDKDFAKDLFRRTVLNEAVLAKEYDDKTPNWDSERIAEIDTIIL
CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
KMAICEFLKFPSIPVKVTLNEYLEIAKEYSTPKSSIFINGILDNLVKELEASKKMVKVGR
HHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCHHHEEHHHHHHHHHHHHHHHHHHHHHCC
GLM
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA