Click here to switch to the map view.

The map label for this gene is ydcR [C]

Identifier: 146299759

GI number: 146299759

Start: 2334000

End: 2335007

Strand: Direct

Name: ydcR [C]

Synonym: Fjoh_1999

Alternate gene names: 146299759

Gene position: 2334000-2335007 (Clockwise)

Preceding gene: 146299758

Following gene: 146299760

Centisome position: 38.28

GC content: 33.63

Gene sequence:

>1008_bases
ATGTTAAAAGAAGAAGAAAAATTTGAATTTATAATTAATCACGATAGTGATATTCCGAAGTACCAGCAATTGGTTGATGG
AATTACAAATGCTATTGCCGAGAACATTTTACAAAAGGGAGATTTGCTTCCGTCAGTAAATGTAATCTGCAAGACCTATC
AGCTATCGAGAGATACAGTTTTTAAAGCGTATACGATTTTAAAAGAACAGAATACGATCGAATCTGTACCCAATAAAGGA
TATTATGTGGCGGGTGAAACAAGAAAAGTGCTTTTGGTTTTAGACACTTTTAAGGCATATAAAGAGGTTTTGTATCATTC
GTTTGTGAATAATCTGCCGGATAATGTGATTACCGATGTGCAGTTTCATCATTATAATATTGATGTTTTTAAAACGATCA
TCAATAACGGAATCGGGAAGTATTACAAATACGTGGTCATGAATTTTGATCACAAAGAAATTGCTCCTGCGTTGTCGGCA
ATTTCAAAAGATAAACTGCTTTTGATAGACTGGAATATTCAGGCAGATAAAGCAAATAATTATGTTTTTCAGGATTTTGG
GAAAGCATTTTATAATTCATTGACAGAAGCAGTTGATTTGTTTAAAAAGTATAAAAAGATACAATTTGTGTATCCGGATT
TTACAAATCACCCCAAAGAAACAGTTGAGTTTTTCAAAAAATTCTGTGCTGATTTCGGCTTTGAGTATGAAGTGATTACA
GATCCTAAAAAGTTCAATATCGAGAAAGGAATTGCTTATATAAGCGTAAGCGACAGGATTTTGGGACACTTTTTAGAGCA
GTGCAAAGAGAAAGATTATGAGCCGGGGAAAGACGTTGGGTTTTTGTCGTACAACGAAACGCCAATGAAAAAATTTATAT
ACAAAGGAATTTCGGTTGTCTCAACTGATTTTAAAGAATTAGGAACCAAAGCAGCGGCATTTATTACGCATGACGAAGAA
ACGCAGTGTTATGTGCCGACAAATTTAATAATAAGAGAATCATTGTAA

Upstream 100 bases:

>100_bases
GAAATATAGAATTTAAAAAACTTAACATAATTAATGCATAAAATGATTTTTTATAAAAGTTTTTTAGCTACTTTAGCATA
ACAGAACGGAACAGAACGGT

Downstream 100 bases:

>100_bases
GTATGTATTATATCGGATATGATATTGGAAGTTCTTCTGTCAAGGCAGCCTTGGTAGAAGCAGAAACGGGTAAAAAAATA
ATCGTTTTGAATGAACCACA

Product: regulatory protein GntR

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MLKEEEKFEFIINHDSDIPKYQQLVDGITNAIAENILQKGDLLPSVNVICKTYQLSRDTVFKAYTILKEQNTIESVPNKG
YYVAGETRKVLLVLDTFKAYKEVLYHSFVNNLPDNVITDVQFHHYNIDVFKTIINNGIGKYYKYVVMNFDHKEIAPALSA
ISKDKLLLIDWNIQADKANNYVFQDFGKAFYNSLTEAVDLFKKYKKIQFVYPDFTNHPKETVEFFKKFCADFGFEYEVIT
DPKKFNIEKGIAYISVSDRILGHFLEQCKEKDYEPGKDVGFLSYNETPMKKFIYKGISVVSTDFKELGTKAAAFITHDEE
TQCYVPTNLIIRESL

Sequences:

>Translated_335_residues
MLKEEEKFEFIINHDSDIPKYQQLVDGITNAIAENILQKGDLLPSVNVICKTYQLSRDTVFKAYTILKEQNTIESVPNKG
YYVAGETRKVLLVLDTFKAYKEVLYHSFVNNLPDNVITDVQFHHYNIDVFKTIINNGIGKYYKYVVMNFDHKEIAPALSA
ISKDKLLLIDWNIQADKANNYVFQDFGKAFYNSLTEAVDLFKKYKKIQFVYPDFTNHPKETVEFFKKFCADFGFEYEVIT
DPKKFNIEKGIAYISVSDRILGHFLEQCKEKDYEPGKDVGFLSYNETPMKKFIYKGISVVSTDFKELGTKAAAFITHDEE
TQCYVPTNLIIRESL
>Mature_335_residues
MLKEEEKFEFIINHDSDIPKYQQLVDGITNAIAENILQKGDLLPSVNVICKTYQLSRDTVFKAYTILKEQNTIESVPNKG
YYVAGETRKVLLVLDTFKAYKEVLYHSFVNNLPDNVITDVQFHHYNIDVFKTIINNGIGKYYKYVVMNFDHKEIAPALSA
ISKDKLLLIDWNIQADKANNYVFQDFGKAFYNSLTEAVDLFKKYKKIQFVYPDFTNHPKETVEFFKKFCADFGFEYEVIT
DPKKFNIEKGIAYISVSDRILGHFLEQCKEKDYEPGKDVGFLSYNETPMKKFIYKGISVVSTDFKELGTKAAAFITHDEE
TQCYVPTNLIIRESL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38824; Mature: 38824

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKEEEKFEFIINHDSDIPKYQQLVDGITNAIAENILQKGDLLPSVNVICKTYQLSRDTV
CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHH
FKAYTILKEQNTIESVPNKGYYVAGETRKVLLVLDTFKAYKEVLYHSFVNNLPDNVITDV
HHHHHHHHCCCHHHHCCCCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHCCCC
QFHHYNIDVFKTIINNGIGKYYKYVVMNFDHKEIAPALSAISKDKLLLIDWNIQADKANN
EEEEECHHHHHHHHHCCHHHHEEHHEEECCHHHHHHHHHHHCCCCEEEEEECEECCCCCC
YVFQDFGKAFYNSLTEAVDLFKKYKKIQFVYPDFTNHPKETVEFFKKFCADFGFEYEVIT
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
DPKKFNIEKGIAYISVSDRILGHFLEQCKEKDYEPGKDVGFLSYNETPMKKFIYKGISVV
CCHHCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHH
STDFKELGTKAAAFITHDEETQCYVPTNLIIRESL
HHHHHHHCCHHEEEEECCCCCEEEECCCEEEECCC
>Mature Secondary Structure
MLKEEEKFEFIINHDSDIPKYQQLVDGITNAIAENILQKGDLLPSVNVICKTYQLSRDTV
CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHH
FKAYTILKEQNTIESVPNKGYYVAGETRKVLLVLDTFKAYKEVLYHSFVNNLPDNVITDV
HHHHHHHHCCCHHHHCCCCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHCCCC
QFHHYNIDVFKTIINNGIGKYYKYVVMNFDHKEIAPALSAISKDKLLLIDWNIQADKANN
EEEEECHHHHHHHHHCCHHHHEEHHEEECCHHHHHHHHHHHCCCCEEEEEECEECCCCCC
YVFQDFGKAFYNSLTEAVDLFKKYKKIQFVYPDFTNHPKETVEFFKKFCADFGFEYEVIT
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
DPKKFNIEKGIAYISVSDRILGHFLEQCKEKDYEPGKDVGFLSYNETPMKKFIYKGISVV
CCHHCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHH
STDFKELGTKAAAFITHDEETQCYVPTNLIIRESL
HHHHHHHCCHHEEEEECCCCCEEEECCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA