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The map label for this gene is araC [C]

Identifier: 146299492

GI number: 146299492

Start: 2005556

End: 2006416

Strand: Direct

Name: araC [C]

Synonym: Fjoh_1732

Alternate gene names: 146299492

Gene position: 2005556-2006416 (Clockwise)

Preceding gene: 146299489

Following gene: 146299498

Centisome position: 32.89

GC content: 32.98

Gene sequence:

>861_bases
ATGAAACGATATCCCATTTATAGTGTTCAGAATTTTAGCTGTAACGATATTCACCGCGATTTTTACGTCAATACTTTTAA
AGAGCATTTAAAAAGTCACAGTTTTGTCGAAGAACCACATCGTCATGACTCGTATTTAATGGTATTTTTTACGAAAGGTT
CAGGATTGCATGAAGTCGATTTTGATCAGTTCGAAATCAAAAGAGGAAGTCTTTTTGTACTGCAGCCGGGACAAATGCAC
CATTGGAGTTTATCCGAAGACATTGAAGGTTTTGTAATTATCTTTTCTCAGGAATTGTACAATTTGTATTTCGGGCAAAA
AAAGATCAACGATTATAATTTTTATCATTCTATTCAAAACCGGCCAGAAATGGTTTTTGAAGAAAAAGAAATCCCAAAAA
TCCAGCCTTATTTCGATTTACTGATTCAGGAAAATAGCCAAGACAATAAATACCAATTAGACAAATTATTGAATTTGTTG
GATTGTATTCATATTGAAGTAGCCAGAAAATATGGCGAAACCTATTCGCATCAAACCCATTCATACAATATCAAAATCAA
CAAGTTTGAATTACTTTTGGAAGAATATTTCAGAACCGAGAAATTGCCTTCGTTTTATGCAGAAAAACTAAATATTACGC
TGAAACATTTAAACAGAATCTGCAACGAAATTCTCCAAAAAACAGCAACTGAAGTTATCACAGATCGTGTAATTCTGGAA
ATAAAAAGAATGCTGATCGATAAGCAATTAGCTGTAAACGAAGTCGCATTCAAAGTCGGTTACGAAGATTACTCGTATTT
CTCCCGTTTCTTCAAAAAACAAACTGGAATGTCGCCGACTGAATTTAGAAATATAAAATAA

Upstream 100 bases:

>100_bases
ACATGATATTGTTGATTTTTGTTTATACAAAGGTAATTCAGAGCATTGTAAAAGTCTTTTTAGTATCTTCGCTTATTATA
GTACAATAAAGACATTTTTT

Downstream 100 bases:

>100_bases
AAAAGAGCTTCGACTTCGCTCAGCCTGACAATCGTATTCTTAAATATATCATATGTCAGGCTGAGCGAAGTCGAAGCTCT
TGTTCCTAAAAGCAAAAAAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; AraC-Type Transcription Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Arac Family; Transcriptional Regulatory Protein; AraC-Family Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; Transcriptional Regulator AraC Family Protein; Bacterial Regulatory Helix-Turn-Helix Protein; PobR Regulator; AraC-Type Transcriptional Regulator; Helix-Turn-Helix AraC Type; Transcriptional Regulator Pobr Arac Family Protein; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Protein; Transcriptional Regulator AraC Type; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; AraC Family Transcription Regulator Protein; Regulatory Helix-Turn-Helix Protein AraC Family; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKRYPIYSVQNFSCNDIHRDFYVNTFKEHLKSHSFVEEPHRHDSYLMVFFTKGSGLHEVDFDQFEIKRGSLFVLQPGQMH
HWSLSEDIEGFVIIFSQELYNLYFGQKKINDYNFYHSIQNRPEMVFEEKEIPKIQPYFDLLIQENSQDNKYQLDKLLNLL
DCIHIEVARKYGETYSHQTHSYNIKINKFELLLEEYFRTEKLPSFYAEKLNITLKHLNRICNEILQKTATEVITDRVILE
IKRMLIDKQLAVNEVAFKVGYEDYSYFSRFFKKQTGMSPTEFRNIK

Sequences:

>Translated_286_residues
MKRYPIYSVQNFSCNDIHRDFYVNTFKEHLKSHSFVEEPHRHDSYLMVFFTKGSGLHEVDFDQFEIKRGSLFVLQPGQMH
HWSLSEDIEGFVIIFSQELYNLYFGQKKINDYNFYHSIQNRPEMVFEEKEIPKIQPYFDLLIQENSQDNKYQLDKLLNLL
DCIHIEVARKYGETYSHQTHSYNIKINKFELLLEEYFRTEKLPSFYAEKLNITLKHLNRICNEILQKTATEVITDRVILE
IKRMLIDKQLAVNEVAFKVGYEDYSYFSRFFKKQTGMSPTEFRNIK
>Mature_286_residues
MKRYPIYSVQNFSCNDIHRDFYVNTFKEHLKSHSFVEEPHRHDSYLMVFFTKGSGLHEVDFDQFEIKRGSLFVLQPGQMH
HWSLSEDIEGFVIIFSQELYNLYFGQKKINDYNFYHSIQNRPEMVFEEKEIPKIQPYFDLLIQENSQDNKYQLDKLLNLL
DCIHIEVARKYGETYSHQTHSYNIKINKFELLLEEYFRTEKLPSFYAEKLNITLKHLNRICNEILQKTATEVITDRVILE
IKRMLIDKQLAVNEVAFKVGYEDYSYFSRFFKKQTGMSPTEFRNIK

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34445; Mature: 34445

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYPIYSVQNFSCNDIHRDFYVNTFKEHLKSHSFVEEPHRHDSYLMVFFTKGSGLHEVD
CCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEEECCCCCCCCC
FDQFEIKRGSLFVLQPGQMHHWSLSEDIEGFVIIFSQELYNLYFGQKKINDYNFYHSIQN
CCCEEEECCCEEEECCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCHHCCCHHHHHHHCC
RPEMVFEEKEIPKIQPYFDLLIQENSQDNKYQLDKLLNLLDCIHIEVARKYGETYSHQTH
CCHHHCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
SYNIKINKFELLLEEYFRTEKLPSFYAEKLNITLKHLNRICNEILQKTATEVITDRVILE
EEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKRMLIDKQLAVNEVAFKVGYEDYSYFSRFFKKQTGMSPTEFRNIK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure
MKRYPIYSVQNFSCNDIHRDFYVNTFKEHLKSHSFVEEPHRHDSYLMVFFTKGSGLHEVD
CCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEEECCCCCCCCC
FDQFEIKRGSLFVLQPGQMHHWSLSEDIEGFVIIFSQELYNLYFGQKKINDYNFYHSIQN
CCCEEEECCCEEEECCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCHHCCCHHHHHHHCC
RPEMVFEEKEIPKIQPYFDLLIQENSQDNKYQLDKLLNLLDCIHIEVARKYGETYSHQTH
CCHHHCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
SYNIKINKFELLLEEYFRTEKLPSFYAEKLNITLKHLNRICNEILQKTATEVITDRVILE
EEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKRMLIDKQLAVNEVAFKVGYEDYSYFSRFFKKQTGMSPTEFRNIK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA