| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is pfeA [H]
Identifier: 146299250
GI number: 146299250
Start: 1712701
End: 1715547
Strand: Direct
Name: pfeA [H]
Synonym: Fjoh_1490
Alternate gene names: 146299250
Gene position: 1712701-1715547 (Clockwise)
Preceding gene: 146299247
Following gene: 146299251
Centisome position: 28.09
GC content: 36.14
Gene sequence:
>2847_bases ATGAAAAAAAATGTACTAATCGTTTTGGGTCTTGTGACATTTTCAGGCCTTTATGCTCAGGACAATAAAACCGAGCAGGA TTCTTTGAAGAATAATGAATTGTCAGAAGTAACCATAATTGGATCAAGAAGTAAGAACAGAGTAAAAACAGATGTGCCGG TTCCGGTTGATGTTTTTAATATTGCCGATATTACAAAAGGAGCGCCGCAAACCAGCGTAACTCAAATTTTAAATTATGTT GCGCCGTCGTTTACAAGTAACGCAACATCAACTGCCGATGCAACAGATCACGTTGATCCGGCACAATTAAGAGGTTTAGG ACCAGATCAGGTTTTAATTTTAGTAAACGGAAAACGAAGACATACCAGCGCATTGGTAAACATAAACGGATCGCCGGGAA GAGGATCTGTAGGAACTGATTTAAATGCCATTCCATCTTTTGCTATTGAAAGAATCGAAGTTTTGAGAGACGGTGCGGCT GCACAATATGGTTCAGATGCTATTGCAGGAGTTATCAATATCGTATTAAAGAAAAATGCCAACTATATTTCTGGAGGAGT TCAGTATGGAGCTAACTTGTCATCAGGTTCAAATAACTTTAAAGGAGGATCAGATGGACAAACAACCCAGATTGATTTAA ATTACGGAACTTCTTTAGGAAAACCCGGAAGTTATTTAAACCTAACTGCTGTTGGTGTAACAAGACAGGCAACAAGCAGA GCAGGAATTAGAAATAACGGAATTTTTAATGCTTATAATGCTGTAGAAAACAGAGCGGCTCAAAATGGAGTCGAAATCAA TTCATTGTTCAGTAATATTAATGCGACTGGAAATTCGGCACAAATTATAAGTTCGCTGCAGCAATATGCGCCGCAGGTAA GTTATTTTACAACAGCACAGCAAAATGCAATTGCATCGGCAACAACAATTGCTCAAATGCAGACAGCGCTTAATTTTGAT GTTACTAATAATGAGTTAGCTTACAGAGGACAGCAAAGAGCAGATTATAATATGAGTGTGGGTCAGTCAGAATTGGCTTC GGGACAGGCATATTATAATGCAAAATATCCTTTAACCGAAACAACTTCACTATATTCATTTGGAGGAATCTCTTATAGAA ACGGGAAATCGTATGCTTTTAACAGACTGCCAAACGGTTCAGGAACTTTCACGCAAGTGTATCAAAACGGATTTTTACCG GAAATTGAATCTAAAATTTTAGATGCTTCAGCTGCACTTGGGGTTACAACAAATATTTTAGGCTTCGATACAGATTTAAG CACCAATTTAGGAACCAATTCATTTAATTATGATGTAAACAATACTATCAATGCTACTTTAGGAACCAATTCACCTTTGA GTTTCGATGCTGGAAAAGTTTCATTTTTACAAAGCACAACCAATTTAGATTTCAGTAAAAAGCTTGATGTTCTTTCTGGA TTAAATGTTGCTTTTGGAGGAGAATTTAGATATGAAAATTACCAAATTAAAGCAGGAGAAGAAGCTTCATACGGATTATA TGATGTAAACGGAGCTTTGGTAACCGGAATTTTACCAAGTACTTCACCTTTAATTGTTACTGATTTCTTTGGCAACAAAC GTGGAGCGGGAGCGCAGGGATTCTCAGGATTTCAGCCTTCAGATGCTAAAGAAAAAGACAGACAAAGCGGTGCTGCCTAC ATTGATTTAGAGTTGAATGCAACCGAAAAATGGCTGGTAAACGGAGCGGCACGTTATGAAAACTATTCAGATTTTGGAAG TACAGTTACTTTTAAATTAGCTTCTCTTTTAAAATTAACAGATAATATCAATTGGAGAGTTTCAGGACAGACAGGTTTTA GAGCGCCATCATTACAGCAAAAATATTTTGAAAGCAGTTCTACACAATTCATTAATGGGGCGCCTTATCAGGTTGGATAT TTTACAAATGATTCTCAGGCCGCAAAAAGTATTGGTGTAGAAAATTTAAAACCAGAAAAATCAAAAAGCATCAGTACAGG ATTTACATTTAAAATTCCGGAAGCAAACATTACAATTTCTACAGATGCTTATTATACAAGAATCAACGACAGAATTGTTT TATCAGGACAATATGCAAGACCAACAGATGCACAGATAAATGCTGCAACATCGCAGACACAAAAAGATGCTTTGACATTG TTTCAACAGGCATTTGATTTAAAAGGTGTTGAGAGAGCTTCATTCTGGACAAACGGAATTGACTCAGAAACAAAAGGAGT TGATTTAGTAATTTCTCAAAAATATGATGTAATTCAGGATTTTGTAATCAGAAACGATTTTGCTTTAAGTTTTAATGAAA CAAAAAGAGTAGGCGCTTTAAATGTACCACAGTCTATTATTGATGCAGGAGGCGATCCTTATATATATTCATTTTTTCCT GAGTCAAGCCGAATTTATTTAGAAGAAGCAATTCCGAAATTAAAAGCAAACCTAACAACGACTTTCAGTATCAAAAAACT GGATATATATTTAAGGAACAGCTATTTTGGAAAAGTAACAGATCCGGGAGCAACAGATGTTAATTTAGATGGATTTTCTT CTGTTTACGAACATCCGGAATACAGTGCAAAACTAGTAACCGATTTATCTTTTGGATACCAGATAAACGAACATTTTAGA GCGACTGTTGGATTTAATAATATAGGAGATGTTTATCCGGACAGAAATAATCCTTCGACTCCGGCTTTCACAAACACAAC TCCAACTTTATCTCCGGCGCCAAGTACAGACTTAACAAACGCAAATCAGTTTGCATATTCAAGAGCTGTATCGCAATTTG GATTAAACGGAAGATTTGGATTTGCACGTTTAAGCTTTAAATTTTAA
Upstream 100 bases:
>100_bases AATATAATAGAACCTCTGCCCGCCGCAGAGGTTTTTTTTGTTTCAAACCGAAAAAACTGTAAGTCTTTTAAGCCAAAAAC AAATTAATCACTAAAAAGAA
Downstream 100 bases:
>100_bases AGTAAAAGAATAGACCACAGATTATAAAGATTAGACGAATTAGCGCTGATTTTTTAAATCAATGTAATCTTATTAATCTG TGGCTAATTTTTTTATGATA
Product: TonB-dependent receptor, plug
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 948; Mature: 948
Protein sequence:
>948_residues MKKNVLIVLGLVTFSGLYAQDNKTEQDSLKNNELSEVTIIGSRSKNRVKTDVPVPVDVFNIADITKGAPQTSVTQILNYV APSFTSNATSTADATDHVDPAQLRGLGPDQVLILVNGKRRHTSALVNINGSPGRGSVGTDLNAIPSFAIERIEVLRDGAA AQYGSDAIAGVINIVLKKNANYISGGVQYGANLSSGSNNFKGGSDGQTTQIDLNYGTSLGKPGSYLNLTAVGVTRQATSR AGIRNNGIFNAYNAVENRAAQNGVEINSLFSNINATGNSAQIISSLQQYAPQVSYFTTAQQNAIASATTIAQMQTALNFD VTNNELAYRGQQRADYNMSVGQSELASGQAYYNAKYPLTETTSLYSFGGISYRNGKSYAFNRLPNGSGTFTQVYQNGFLP EIESKILDASAALGVTTNILGFDTDLSTNLGTNSFNYDVNNTINATLGTNSPLSFDAGKVSFLQSTTNLDFSKKLDVLSG LNVAFGGEFRYENYQIKAGEEASYGLYDVNGALVTGILPSTSPLIVTDFFGNKRGAGAQGFSGFQPSDAKEKDRQSGAAY IDLELNATEKWLVNGAARYENYSDFGSTVTFKLASLLKLTDNINWRVSGQTGFRAPSLQQKYFESSSTQFINGAPYQVGY FTNDSQAAKSIGVENLKPEKSKSISTGFTFKIPEANITISTDAYYTRINDRIVLSGQYARPTDAQINAATSQTQKDALTL FQQAFDLKGVERASFWTNGIDSETKGVDLVISQKYDVIQDFVIRNDFALSFNETKRVGALNVPQSIIDAGGDPYIYSFFP ESSRIYLEEAIPKLKANLTTTFSIKKLDIYLRNSYFGKVTDPGATDVNLDGFSSVYEHPEYSAKLVTDLSFGYQINEHFR ATVGFNNIGDVYPDRNNPSTPAFTNTTPTLSPAPSTDLTNANQFAYSRAVSQFGLNGRFGFARLSFKF
Sequences:
>Translated_948_residues MKKNVLIVLGLVTFSGLYAQDNKTEQDSLKNNELSEVTIIGSRSKNRVKTDVPVPVDVFNIADITKGAPQTSVTQILNYV APSFTSNATSTADATDHVDPAQLRGLGPDQVLILVNGKRRHTSALVNINGSPGRGSVGTDLNAIPSFAIERIEVLRDGAA AQYGSDAIAGVINIVLKKNANYISGGVQYGANLSSGSNNFKGGSDGQTTQIDLNYGTSLGKPGSYLNLTAVGVTRQATSR AGIRNNGIFNAYNAVENRAAQNGVEINSLFSNINATGNSAQIISSLQQYAPQVSYFTTAQQNAIASATTIAQMQTALNFD VTNNELAYRGQQRADYNMSVGQSELASGQAYYNAKYPLTETTSLYSFGGISYRNGKSYAFNRLPNGSGTFTQVYQNGFLP EIESKILDASAALGVTTNILGFDTDLSTNLGTNSFNYDVNNTINATLGTNSPLSFDAGKVSFLQSTTNLDFSKKLDVLSG LNVAFGGEFRYENYQIKAGEEASYGLYDVNGALVTGILPSTSPLIVTDFFGNKRGAGAQGFSGFQPSDAKEKDRQSGAAY IDLELNATEKWLVNGAARYENYSDFGSTVTFKLASLLKLTDNINWRVSGQTGFRAPSLQQKYFESSSTQFINGAPYQVGY FTNDSQAAKSIGVENLKPEKSKSISTGFTFKIPEANITISTDAYYTRINDRIVLSGQYARPTDAQINAATSQTQKDALTL FQQAFDLKGVERASFWTNGIDSETKGVDLVISQKYDVIQDFVIRNDFALSFNETKRVGALNVPQSIIDAGGDPYIYSFFP ESSRIYLEEAIPKLKANLTTTFSIKKLDIYLRNSYFGKVTDPGATDVNLDGFSSVYEHPEYSAKLVTDLSFGYQINEHFR ATVGFNNIGDVYPDRNNPSTPAFTNTTPTLSPAPSTDLTNANQFAYSRAVSQFGLNGRFGFARLSFKF >Mature_948_residues MKKNVLIVLGLVTFSGLYAQDNKTEQDSLKNNELSEVTIIGSRSKNRVKTDVPVPVDVFNIADITKGAPQTSVTQILNYV APSFTSNATSTADATDHVDPAQLRGLGPDQVLILVNGKRRHTSALVNINGSPGRGSVGTDLNAIPSFAIERIEVLRDGAA AQYGSDAIAGVINIVLKKNANYISGGVQYGANLSSGSNNFKGGSDGQTTQIDLNYGTSLGKPGSYLNLTAVGVTRQATSR AGIRNNGIFNAYNAVENRAAQNGVEINSLFSNINATGNSAQIISSLQQYAPQVSYFTTAQQNAIASATTIAQMQTALNFD VTNNELAYRGQQRADYNMSVGQSELASGQAYYNAKYPLTETTSLYSFGGISYRNGKSYAFNRLPNGSGTFTQVYQNGFLP EIESKILDASAALGVTTNILGFDTDLSTNLGTNSFNYDVNNTINATLGTNSPLSFDAGKVSFLQSTTNLDFSKKLDVLSG LNVAFGGEFRYENYQIKAGEEASYGLYDVNGALVTGILPSTSPLIVTDFFGNKRGAGAQGFSGFQPSDAKEKDRQSGAAY IDLELNATEKWLVNGAARYENYSDFGSTVTFKLASLLKLTDNINWRVSGQTGFRAPSLQQKYFESSSTQFINGAPYQVGY FTNDSQAAKSIGVENLKPEKSKSISTGFTFKIPEANITISTDAYYTRINDRIVLSGQYARPTDAQINAATSQTQKDALTL FQQAFDLKGVERASFWTNGIDSETKGVDLVISQKYDVIQDFVIRNDFALSFNETKRVGALNVPQSIIDAGGDPYIYSFFP ESSRIYLEEAIPKLKANLTTTFSIKKLDIYLRNSYFGKVTDPGATDVNLDGFSSVYEHPEYSAKLVTDLSFGYQINEHFR ATVGFNNIGDVYPDRNNPSTPAFTNTTPTLSPAPSTDLTNANQFAYSRAVSQFGLNGRFGFARLSFKF
Specific function: Specific receptor for the siderophore ferric enterobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786798, Length=130, Percent_Identity=33.0769230769231, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 102607; Mature: 102607
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNVLIVLGLVTFSGLYAQDNKTEQDSLKNNELSEVTIIGSRSKNRVKTDVPVPVDVFN CCCCEEEEEEEHHHCCEEECCCCCHHHHCCCCCCCEEEEEECCCCCCEECCCCCCEEEEE IADITKGAPQTSVTQILNYVAPSFTSNATSTADATDHVDPAQLRGLGPDQVLILVNGKRR HHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCC HTSALVNINGSPGRGSVGTDLNAIPSFAIERIEVLRDGAAAQYGSDAIAGVINIVLKKNA CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHCCC NYISGGVQYGANLSSGSNNFKGGSDGQTTQIDLNYGTSLGKPGSYLNLTAVGVTRQATSR CEEECCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEHHHHHH AGIRNNGIFNAYNAVENRAAQNGVEINSLFSNINATGNSAQIISSLQQYAPQVSYFTTAQ CCCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECHH QNAIASATTIAQMQTALNFDVTNNELAYRGQQRADYNMSVGQSELASGQAYYNAKYPLTE HHHHHHHHHHHHHHHHHEECCCCCCCEECCCCCCCCCCCCCHHHHHCCCEEEECCCCCCC TTSLYSFGGISYRNGKSYAFNRLPNGSGTFTQVYQNGFLPEIESKILDASAALGVTTNIL CCCEEEECCEEEECCCCEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEE GFDTDLSTNLGTNSFNYDVNNTINATLGTNSPLSFDAGKVSFLQSTTNLDFSKKLDVLSG EECCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHC LNVAFGGEFRYENYQIKAGEEASYGLYDVNGALVTGILPSTSPLIVTDFFGNKRGAGAQG CCEEECCEEEECCEEEECCCCCCCCEEECCCEEEEEECCCCCCEEEEECCCCCCCCCCCC FSGFQPSDAKEKDRQSGAAYIDLELNATEKWLVNGAARYENYSDFGSTVTFKLASLLKLT CCCCCCCCCHHHHHHCCCEEEEEEECCCHHHECCCHHHCCCHHHHCCCHHHHHHHHHHHH DNINWRVSGQTGFRAPSLQQKYFESSSTQFINGAPYQVGYFTNDSQAAKSIGVENLKPEK CCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCEEEEEEECCHHHHHHCCCCCCCCCC SKSISTGFTFKIPEANITISTDAYYTRINDRIVLSGQYARPTDAQINAATSQTQKDALTL CCCCCCCEEEEECCCCEEEECCCEEEEECCEEEEECCCCCCCCCEEECCHHHHHHHHHHH FQQAFDLKGVERASFWTNGIDSETKGVDLVISQKYDVIQDFVIRNDFALSFNETKRVGAL HHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCC NVPQSIIDAGGDPYIYSFFPESSRIYLEEAIPKLKANLTTTFSIKKLDIYLRNSYFGKVT CCCHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCCC DPGATDVNLDGFSSVYEHPEYSAKLVTDLSFGYQINEHFRATVGFNNIGDVYPDRNNPST CCCCCCCCCCCHHHHHCCCCCCEEEEEEEECCEEECCCEEEEECCCCCCCCCCCCCCCCC PAFTNTTPTLSPAPSTDLTNANQFAYSRAVSQFGLNGRFGFARLSFKF CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECC >Mature Secondary Structure MKKNVLIVLGLVTFSGLYAQDNKTEQDSLKNNELSEVTIIGSRSKNRVKTDVPVPVDVFN CCCCEEEEEEEHHHCCEEECCCCCHHHHCCCCCCCEEEEEECCCCCCEECCCCCCEEEEE IADITKGAPQTSVTQILNYVAPSFTSNATSTADATDHVDPAQLRGLGPDQVLILVNGKRR HHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCC HTSALVNINGSPGRGSVGTDLNAIPSFAIERIEVLRDGAAAQYGSDAIAGVINIVLKKNA CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHCCC NYISGGVQYGANLSSGSNNFKGGSDGQTTQIDLNYGTSLGKPGSYLNLTAVGVTRQATSR CEEECCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEHHHHHH AGIRNNGIFNAYNAVENRAAQNGVEINSLFSNINATGNSAQIISSLQQYAPQVSYFTTAQ CCCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECHH QNAIASATTIAQMQTALNFDVTNNELAYRGQQRADYNMSVGQSELASGQAYYNAKYPLTE HHHHHHHHHHHHHHHHHEECCCCCCCEECCCCCCCCCCCCCHHHHHCCCEEEECCCCCCC TTSLYSFGGISYRNGKSYAFNRLPNGSGTFTQVYQNGFLPEIESKILDASAALGVTTNIL CCCEEEECCEEEECCCCEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEE GFDTDLSTNLGTNSFNYDVNNTINATLGTNSPLSFDAGKVSFLQSTTNLDFSKKLDVLSG EECCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHC LNVAFGGEFRYENYQIKAGEEASYGLYDVNGALVTGILPSTSPLIVTDFFGNKRGAGAQG CCEEECCEEEECCEEEECCCCCCCCEEECCCEEEEEECCCCCCEEEEECCCCCCCCCCCC FSGFQPSDAKEKDRQSGAAYIDLELNATEKWLVNGAARYENYSDFGSTVTFKLASLLKLT CCCCCCCCCHHHHHHCCCEEEEEEECCCHHHECCCHHHCCCHHHHCCCHHHHHHHHHHHH DNINWRVSGQTGFRAPSLQQKYFESSSTQFINGAPYQVGYFTNDSQAAKSIGVENLKPEK CCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCEEEEEEECCHHHHHHCCCCCCCCCC SKSISTGFTFKIPEANITISTDAYYTRINDRIVLSGQYARPTDAQINAATSQTQKDALTL CCCCCCCEEEEECCCCEEEECCCEEEEECCEEEEECCCCCCCCCEEECCHHHHHHHHHHH FQQAFDLKGVERASFWTNGIDSETKGVDLVISQKYDVIQDFVIRNDFALSFNETKRVGAL HHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCC NVPQSIIDAGGDPYIYSFFPESSRIYLEEAIPKLKANLTTTFSIKKLDIYLRNSYFGKVT CCCHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCCC DPGATDVNLDGFSSVYEHPEYSAKLVTDLSFGYQINEHFRATVGFNNIGDVYPDRNNPST CCCCCCCCCCCHHHHHCCCCCCEEEEEEEECCEEECCCEEEEECCCCCCCCCCCCCCCCC PAFTNTTPTLSPAPSTDLTNANQFAYSRAVSQFGLNGRFGFARLSFKF CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8419284; 10984043 [H]