| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146299247
Identifier: 146299247
GI number: 146299247
Start: 1706690
End: 1708948
Strand: Direct
Name: 146299247
Synonym: Fjoh_1487
Alternate gene names: NA
Gene position: 1706690-1708948 (Clockwise)
Preceding gene: 146299246
Following gene: 146299250
Centisome position: 27.99
GC content: 31.03
Gene sequence:
>2259_bases ATGCGCAATATTGTTTGGAGTTTATCACTCTTGTTTGCCGGAATGTTTGTTTCTTTCGCTCAAACAAATGGTATTCAAAA AGGAACTTATTTATCTACAAATAAAGGTGGAAAAATAAAACTAAATTTATTAGACGATAACAAATACGAACTGGTCTTTT ATACGGGAGAATATGAAATTAAAGGCGATTCGTTAGTTTTTTCTAAAAATGCACAATCAGAAAACGGGTTTAATCTTTCG TTTAAAAATGATAAAAAAGCCAAAAAGATTAAGATTAAAATCTTAGACCCAACTCTTTATTCAGTTTATATAGGACCTAA CTTTTATATAGGTACTCAAAAAGCTTCAGAAACAGTTCAGTATCAAAGAATTTCTGATATTAGAGCAAAAGTAGATCCAA ACTGGACATCAACAGATTTAGAATTTGAAATAGACAAAACAGATTTTTTGTATTTGGTTATAGAAAATCATGACGGAAAA AGTAATATTAGTAAATATGCACTGGACAAAGATGTTTCAGAAGCAGCAATTGATTATCAGTCACAGCCTTTAGGTAATCT CAATTTTGCCGGGTTTTATGACAGAAAAACAAACCAGCTGAAAGTTTCTGAACCATTAGTAAACGAGCCTTTCGTATTTG TAAACGAAAAAGATGTACAGCCGGATAAAACGCCTAAAGTTGTTCCTTTAGAAAATCAAACTATAACAAACTGGACTTAT CCGGGAAAAAGCCCTTATTATGACTATTATGGAACTGCTGTAGACAGTACTCAAAATAATGCAATTGATAGTGTTGCTGT TGACACAACTGCATACGCTTCAACAGATTATTCATATAATTTTAAACTTAAAATAGAAAATAATCTAAAAAGTGCTCTTG CTGCAACTAAAGATGCTAAAACTAAGTTTTTAGTTGGAATTGTAGACAGCAAAAATCCCTCTGCAAAAGCAAATTTTGAT GCATTCATAAAAAGTCAGGAATCACAGACAGGATACAACATGTATGATAAATATGATGCAAAATATGATGTTTATAATTA TTACATGGCCGGTGCCGATGATAAAAAATGGCTGAAAAACAATAAAATAACAAACGACCCAAGTATATTCATTTTAAACG GAAACGGTGATCTATTAGCTGTTGCAAAATCTGATTTAATATCAAACCAATATCAGTTTAGTTATAATGGCAGCTATTAT CTTAAACTATTGCGTGCAGATGCTTCTATGTCTATTGGTAAAGTCCTGAAAAATAAAAAAGCATCTGATGCTGATTTGAT TCAGGCTTTTAATAAAACGGCAGCACTGCAAACATCTTATGATGATGATTATACTGCATATGATTCTGCTGATCTGGTAA TTTCTAAACCAGCCTTAGATAAAAAAGAAGTGGCTCAAACCTGGAAAAAATTAATTGAGGCACATCAAAAAGATAAAAAT CCAGATATGAGTTTGGCAGAAACCATTATAAAAGAAATTAAGAATGTTGGATTTACCAAACAGCTTTTTAACGAAGACAG AATTTTAGACGATACAGACTTCTTAGCAATTGATTATTTGTTAAAACATTCTGATGAAATAGAAAGTAATCGTGCAGCAT TCAATAATGATGCACCGGAAGTTCATTATATAGACAATGTTTTTTCTGAAATTTCCAATGCATTGCAGGGTAATCTAAAT GTTTCTAAAGATGGAGCAGGAGGAGAAAAAAACAAAGACAAAGTCAATTCGATTTATAAAAAAATCATTGCATCTGGAAA AGGAAATTTTGAATCCTATAGAAACTATTTTGACTATTTAGGTCAGTTTACAGACAATGACGGTTCTAATACAACCTACT TAAAAGAGTTTAATACTTATTTTGATAATACATTAGCAGGGGCAAATCCAATTGAAAAATTAGATGTTATTTTTTCAGGA TTAGACCCGAACTCTAGTTATTCTTATGACGGATGGAACTCATTTAAACTTTACAATTCAGATATTTGCAATAATGCAGC CTGGATGGTTGTATTAAAATCTCAGAATTCTAACTTTATTAAAGATGCTATAAAATGGTCTGAATATAGTTTAGTAATAT CTAAAAACAATCCATATTATTTAGATACGCTGGCACAGTTGTATTACAAAGACGGACAAAAAGATAAAGCCATTGCAACT GAGACTCTGGCAGTACAATATTTAACCGATAGTGTTGAAGAACAAACTGCAAATGATATAAAAGAAGTTTTATCTAAAAT GCAGAATGGAACCTATTAA
Upstream 100 bases:
>100_bases ATTTTTTATTGTAGTATTTTAACTACAATATTATGATTTTTTTGGCTTTGTTTGAGAGTGAATCAGATAATTTTGTACTA TTATTAAATACAAAATAGTC
Downstream 100 bases:
>100_bases TATCAAGATATCAGAATAAAAAGAAACCCGGCAAATTTTAGTTTTGCCGGGTTTTCTTTTACTATTTTTTAATGCCTGCC ATTACTTTGATTTGATAATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 752; Mature: 752
Protein sequence:
>752_residues MRNIVWSLSLLFAGMFVSFAQTNGIQKGTYLSTNKGGKIKLNLLDDNKYELVFYTGEYEIKGDSLVFSKNAQSENGFNLS FKNDKKAKKIKIKILDPTLYSVYIGPNFYIGTQKASETVQYQRISDIRAKVDPNWTSTDLEFEIDKTDFLYLVIENHDGK SNISKYALDKDVSEAAIDYQSQPLGNLNFAGFYDRKTNQLKVSEPLVNEPFVFVNEKDVQPDKTPKVVPLENQTITNWTY PGKSPYYDYYGTAVDSTQNNAIDSVAVDTTAYASTDYSYNFKLKIENNLKSALAATKDAKTKFLVGIVDSKNPSAKANFD AFIKSQESQTGYNMYDKYDAKYDVYNYYMAGADDKKWLKNNKITNDPSIFILNGNGDLLAVAKSDLISNQYQFSYNGSYY LKLLRADASMSIGKVLKNKKASDADLIQAFNKTAALQTSYDDDYTAYDSADLVISKPALDKKEVAQTWKKLIEAHQKDKN PDMSLAETIIKEIKNVGFTKQLFNEDRILDDTDFLAIDYLLKHSDEIESNRAAFNNDAPEVHYIDNVFSEISNALQGNLN VSKDGAGGEKNKDKVNSIYKKIIASGKGNFESYRNYFDYLGQFTDNDGSNTTYLKEFNTYFDNTLAGANPIEKLDVIFSG LDPNSSYSYDGWNSFKLYNSDICNNAAWMVVLKSQNSNFIKDAIKWSEYSLVISKNNPYYLDTLAQLYYKDGQKDKAIAT ETLAVQYLTDSVEEQTANDIKEVLSKMQNGTY
Sequences:
>Translated_752_residues MRNIVWSLSLLFAGMFVSFAQTNGIQKGTYLSTNKGGKIKLNLLDDNKYELVFYTGEYEIKGDSLVFSKNAQSENGFNLS FKNDKKAKKIKIKILDPTLYSVYIGPNFYIGTQKASETVQYQRISDIRAKVDPNWTSTDLEFEIDKTDFLYLVIENHDGK SNISKYALDKDVSEAAIDYQSQPLGNLNFAGFYDRKTNQLKVSEPLVNEPFVFVNEKDVQPDKTPKVVPLENQTITNWTY PGKSPYYDYYGTAVDSTQNNAIDSVAVDTTAYASTDYSYNFKLKIENNLKSALAATKDAKTKFLVGIVDSKNPSAKANFD AFIKSQESQTGYNMYDKYDAKYDVYNYYMAGADDKKWLKNNKITNDPSIFILNGNGDLLAVAKSDLISNQYQFSYNGSYY LKLLRADASMSIGKVLKNKKASDADLIQAFNKTAALQTSYDDDYTAYDSADLVISKPALDKKEVAQTWKKLIEAHQKDKN PDMSLAETIIKEIKNVGFTKQLFNEDRILDDTDFLAIDYLLKHSDEIESNRAAFNNDAPEVHYIDNVFSEISNALQGNLN VSKDGAGGEKNKDKVNSIYKKIIASGKGNFESYRNYFDYLGQFTDNDGSNTTYLKEFNTYFDNTLAGANPIEKLDVIFSG LDPNSSYSYDGWNSFKLYNSDICNNAAWMVVLKSQNSNFIKDAIKWSEYSLVISKNNPYYLDTLAQLYYKDGQKDKAIAT ETLAVQYLTDSVEEQTANDIKEVLSKMQNGTY >Mature_752_residues MRNIVWSLSLLFAGMFVSFAQTNGIQKGTYLSTNKGGKIKLNLLDDNKYELVFYTGEYEIKGDSLVFSKNAQSENGFNLS FKNDKKAKKIKIKILDPTLYSVYIGPNFYIGTQKASETVQYQRISDIRAKVDPNWTSTDLEFEIDKTDFLYLVIENHDGK SNISKYALDKDVSEAAIDYQSQPLGNLNFAGFYDRKTNQLKVSEPLVNEPFVFVNEKDVQPDKTPKVVPLENQTITNWTY PGKSPYYDYYGTAVDSTQNNAIDSVAVDTTAYASTDYSYNFKLKIENNLKSALAATKDAKTKFLVGIVDSKNPSAKANFD AFIKSQESQTGYNMYDKYDAKYDVYNYYMAGADDKKWLKNNKITNDPSIFILNGNGDLLAVAKSDLISNQYQFSYNGSYY LKLLRADASMSIGKVLKNKKASDADLIQAFNKTAALQTSYDDDYTAYDSADLVISKPALDKKEVAQTWKKLIEAHQKDKN PDMSLAETIIKEIKNVGFTKQLFNEDRILDDTDFLAIDYLLKHSDEIESNRAAFNNDAPEVHYIDNVFSEISNALQGNLN VSKDGAGGEKNKDKVNSIYKKIIASGKGNFESYRNYFDYLGQFTDNDGSNTTYLKEFNTYFDNTLAGANPIEKLDVIFSG LDPNSSYSYDGWNSFKLYNSDICNNAAWMVVLKSQNSNFIKDAIKWSEYSLVISKNNPYYLDTLAQLYYKDGQKDKAIAT ETLAVQYLTDSVEEQTANDIKEVLSKMQNGTY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85004; Mature: 85004
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNIVWSLSLLFAGMFVSFAQTNGIQKGTYLSTNKGGKIKLNLLDDNKYELVFYTGEYEI CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCEEEEEEECEEEE KGDSLVFSKNAQSENGFNLSFKNDKKAKKIKIKILDPTLYSVYIGPNFYIGTQKASETVQ CCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEECCEEEEEEECCEEEEECCCHHHHHH YQRISDIRAKVDPNWTSTDLEFEIDKTDFLYLVIENHDGKSNISKYALDKDVSEAAIDYQ HHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHCCCHHHHHHCCC SQPLGNLNFAGFYDRKTNQLKVSEPLVNEPFVFVNEKDVQPDKTPKVVPLENQTITNWTY CCCCCCCCCCEEECCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCEEECCCCEEEEEEC PGKSPYYDYYGTAVDSTQNNAIDSVAVDTTAYASTDYSYNFKLKIENNLKSALAATKDAK CCCCCCCCCCCCEECCCCCCCCCEEEECCEEEECCCCEEEEEEEECCCHHHHHHHCCCCC TKFLVGIVDSKNPSAKANFDAFIKSQESQTGYNMYDKYDAKYDVYNYYMAGADDKKWLKN CEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCHHCCCCCEEEEEEEEECCCCHHHHHC NKITNDPSIFILNGNGDLLAVAKSDLISNQYQFSYNGSYYLKLLRADASMSIGKVLKNKK CCCCCCCEEEEEECCCCEEEEECHHHHCCCEEEEECCEEEEEEEECCCCHHHHHHHHCCC ASDADLIQAFNKTAALQTSYDDDYTAYDSADLVISKPALDKKEVAQTWKKLIEAHQKDKN CCCHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC PDMSLAETIIKEIKNVGFTKQLFNEDRILDDTDFLAIDYLLKHSDEIESNRAAFNNDAPE CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCCC VHYIDNVFSEISNALQGNLNVSKDGAGGEKNKDKVNSIYKKIIASGKGNFESYRNYFDYL EEHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GQFTDNDGSNTTYLKEFNTYFDNTLAGANPIEKLDVIFSGLDPNSSYSYDGWNSFKLYNS CCCCCCCCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHEECCCCCCCCCCCCCCEEEEECC DICNNAAWMVVLKSQNSNFIKDAIKWSEYSLVISKNNPYYLDTLAQLYYKDGQKDKAIAT CCCCCCEEEEEEECCCCCHHHHHHCCCEEEEEEECCCCEEHHHHHHHHHCCCCCCCHHHH ETLAVQYLTDSVEEQTANDIKEVLSKMQNGTY HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRNIVWSLSLLFAGMFVSFAQTNGIQKGTYLSTNKGGKIKLNLLDDNKYELVFYTGEYEI CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCEEEEEEECEEEE KGDSLVFSKNAQSENGFNLSFKNDKKAKKIKIKILDPTLYSVYIGPNFYIGTQKASETVQ CCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEECCEEEEEEECCEEEEECCCHHHHHH YQRISDIRAKVDPNWTSTDLEFEIDKTDFLYLVIENHDGKSNISKYALDKDVSEAAIDYQ HHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHCCCHHHHHHCCC SQPLGNLNFAGFYDRKTNQLKVSEPLVNEPFVFVNEKDVQPDKTPKVVPLENQTITNWTY CCCCCCCCCCEEECCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCEEECCCCEEEEEEC PGKSPYYDYYGTAVDSTQNNAIDSVAVDTTAYASTDYSYNFKLKIENNLKSALAATKDAK CCCCCCCCCCCCEECCCCCCCCCEEEECCEEEECCCCEEEEEEEECCCHHHHHHHCCCCC TKFLVGIVDSKNPSAKANFDAFIKSQESQTGYNMYDKYDAKYDVYNYYMAGADDKKWLKN CEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCHHCCCCCEEEEEEEEECCCCHHHHHC NKITNDPSIFILNGNGDLLAVAKSDLISNQYQFSYNGSYYLKLLRADASMSIGKVLKNKK CCCCCCCEEEEEECCCCEEEEECHHHHCCCEEEEECCEEEEEEEECCCCHHHHHHHHCCC ASDADLIQAFNKTAALQTSYDDDYTAYDSADLVISKPALDKKEVAQTWKKLIEAHQKDKN CCCHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC PDMSLAETIIKEIKNVGFTKQLFNEDRILDDTDFLAIDYLLKHSDEIESNRAAFNNDAPE CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCCC VHYIDNVFSEISNALQGNLNVSKDGAGGEKNKDKVNSIYKKIIASGKGNFESYRNYFDYL EEHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GQFTDNDGSNTTYLKEFNTYFDNTLAGANPIEKLDVIFSGLDPNSSYSYDGWNSFKLYNS CCCCCCCCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHEECCCCCCCCCCCCCCEEEEECC DICNNAAWMVVLKSQNSNFIKDAIKWSEYSLVISKNNPYYLDTLAQLYYKDGQKDKAIAT CCCCCCEEEEEEECCCCCHHHHHHCCCEEEEEEECCCCEEHHHHHHHHHCCCCCCCHHHH ETLAVQYLTDSVEEQTANDIKEVLSKMQNGTY HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA