Click here to switch to the map view.

The map label for this gene is yfjD [H]

Identifier: 146299174

GI number: 146299174

Start: 1620205

End: 1621464

Strand: Direct

Name: yfjD [H]

Synonym: Fjoh_1414

Alternate gene names: 146299174

Gene position: 1620205-1621464 (Clockwise)

Preceding gene: 146299173

Following gene: 146299175

Centisome position: 26.57

GC content: 30.4

Gene sequence:

>1260_bases
ATGGAAATTAGTATTATAATATTGTGTTTAATACTATCAGCATTTTTTTCAGGAATGGAAATAGCTTTTATTTCCTCAAA
TAAAATTTATCTTGGAATTGAAAAAAAACAAGATAATTTTCTGTCTCAAATTCTAACAAAACTTACCGAAAATCCTTCAA
AATTTATAGCTTCAATGCTTATTGGAAACAATGTAGCACTTGTAGTTTATGGATTTTATATGGGAGATGTTGTCCTGAAA
TGGATAACAGGTCTTGGATTTCATTTTTCAGACGTAACCACTATTTTAGTTCAAACTTTAATTTCGACTTTTATAGTTCT
GATTACAGCAGAGTTTTTTCCGAAAGTTTTTTTTCAAATCTATGCCAATTCCTTAATTAAGATTTTTGCCGTTCCGGCTT
ATCTTTTTTACAGGCTGTTTTACTACGTCTCTACGTTCTTTATCTGGATATCTGATTTTATTTTAAGGAAGTTTTTTAAA
ACAGAAGGCGATCAGGTACAATTGTATTTTAGTAAAGTTGAACTTGGTAATTATATTACAGAACAAATGAGTTCAGTTGA
AGATGATGATGAAGTCGATTCTGAGATTCAGATTTTTCAAAATGCCTTAGAGTTTTCAGGAGTAAAAGCGCGTGATATTA
TGACACCTCGAACAGAACTTGTAGCAATAGATTTATTTGACAGTGTTACAGATTTAAAAGAGCTTTTTATAGAAACCGGA
TATTCAAAAATTGTAGTAAGTCAAAACTCCCTTGATGATATTGTAGGTTATGTACATTCATTCGATTTATTTAAAAAACC
GCAGACCATAAAATCTGTTTTAATGACTGTTGAATTTGTTCCGGAAACGATCTTAATAAAAGACGCTTTAAATATTTTGA
TTAAAAAGCGAAAAAACGTTGCAGTAGTTTTAGATGAATATGGAGGAACTTCCGGAATTGTAACAATTGAAGATATCGTT
GAAGAGCTTTTTGGTGAAATTGAAGATGAGCACGATTTAGATGAAGAATTGATAGAACAGGATTTAGGTGAAGGTAAATA
TTTGTTTTCTACACGCTTAGATGTCGAATATCTAAATGAAACCTACAAACTCATGATTCCCGAAGAAGATTCATATGGAA
CATTAGGAGGCTTTATTGTAAATTCTACCAAAGAAATACCACAAAAAGGAGATAAAATTGTGATTGACAGGTTCCATTTT
AAGATAGAACAGGCTTCAAACAAGAAAATTGAATTGGTCAAAATGACAATAAAAGAGTAA

Upstream 100 bases:

>100_bases
ACCCTTTGAGTTTTGTTATTGCAGGAATGGCTGTTTTTATGTTTTTCTTCAGGAGAAGGTTTCTTAATAAATATAACGAT
CGAAATAAAAAACAGTAAAA

Downstream 100 bases:

>100_bases
ATTTTTAAATAATTAAAAAAAATTGTGTAAAATAAAACGCTAGTTGTATTGTTATTAACTAGATAATTGTATTTTCGCAA
ACTGAATATAAAATTAACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MEISIIILCLILSAFFSGMEIAFISSNKIYLGIEKKQDNFLSQILTKLTENPSKFIASMLIGNNVALVVYGFYMGDVVLK
WITGLGFHFSDVTTILVQTLISTFIVLITAEFFPKVFFQIYANSLIKIFAVPAYLFYRLFYYVSTFFIWISDFILRKFFK
TEGDQVQLYFSKVELGNYITEQMSSVEDDDEVDSEIQIFQNALEFSGVKARDIMTPRTELVAIDLFDSVTDLKELFIETG
YSKIVVSQNSLDDIVGYVHSFDLFKKPQTIKSVLMTVEFVPETILIKDALNILIKKRKNVAVVLDEYGGTSGIVTIEDIV
EELFGEIEDEHDLDEELIEQDLGEGKYLFSTRLDVEYLNETYKLMIPEEDSYGTLGGFIVNSTKEIPQKGDKIVIDRFHF
KIEQASNKKIELVKMTIKE

Sequences:

>Translated_419_residues
MEISIIILCLILSAFFSGMEIAFISSNKIYLGIEKKQDNFLSQILTKLTENPSKFIASMLIGNNVALVVYGFYMGDVVLK
WITGLGFHFSDVTTILVQTLISTFIVLITAEFFPKVFFQIYANSLIKIFAVPAYLFYRLFYYVSTFFIWISDFILRKFFK
TEGDQVQLYFSKVELGNYITEQMSSVEDDDEVDSEIQIFQNALEFSGVKARDIMTPRTELVAIDLFDSVTDLKELFIETG
YSKIVVSQNSLDDIVGYVHSFDLFKKPQTIKSVLMTVEFVPETILIKDALNILIKKRKNVAVVLDEYGGTSGIVTIEDIV
EELFGEIEDEHDLDEELIEQDLGEGKYLFSTRLDVEYLNETYKLMIPEEDSYGTLGGFIVNSTKEIPQKGDKIVIDRFHF
KIEQASNKKIELVKMTIKE
>Mature_419_residues
MEISIIILCLILSAFFSGMEIAFISSNKIYLGIEKKQDNFLSQILTKLTENPSKFIASMLIGNNVALVVYGFYMGDVVLK
WITGLGFHFSDVTTILVQTLISTFIVLITAEFFPKVFFQIYANSLIKIFAVPAYLFYRLFYYVSTFFIWISDFILRKFFK
TEGDQVQLYFSKVELGNYITEQMSSVEDDDEVDSEIQIFQNALEFSGVKARDIMTPRTELVAIDLFDSVTDLKELFIETG
YSKIVVSQNSLDDIVGYVHSFDLFKKPQTIKSVLMTVEFVPETILIKDALNILIKKRKNVAVVLDEYGGTSGIVTIEDIV
EELFGEIEDEHDLDEELIEQDLGEGKYLFSTRLDVEYLNETYKLMIPEEDSYGTLGGFIVNSTKEIPQKGDKIVIDRFHF
KIEQASNKKIELVKMTIKE

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=384, Percent_Identity=24.7395833333333, Blast_Score=109, Evalue=4e-24,
Organism=Escherichia coli, GI145693175, Length=416, Percent_Identity=25.4807692307692, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1790664, Length=443, Percent_Identity=24.8306997742664, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1786879, Length=228, Percent_Identity=27.6315789473684, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788119, Length=237, Percent_Identity=25.7383966244726, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87082033, Length=229, Percent_Identity=23.5807860262009, Blast_Score=86, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47963; Mature: 47963

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEISIIILCLILSAFFSGMEIAFISSNKIYLGIEKKQDNFLSQILTKLTENPSKFIASML
CCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHH
IGNNVALVVYGFYMGDVVLKWITGLGFHFSDVTTILVQTLISTFIVLITAEFFPKVFFQI
HCCCEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YANSLIKIFAVPAYLFYRLFYYVSTFFIWISDFILRKFFKTEGDQVQLYFSKVELGNYIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHH
EQMSSVEDDDEVDSEIQIFQNALEFSGVKARDIMTPRTELVAIDLFDSVTDLKELFIETG
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHEEEEHHHHHHHHHHHHHHHCC
YSKIVVSQNSLDDIVGYVHSFDLFKKPQTIKSVLMTVEFVPETILIKDALNILIKKRKNV
CCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCE
AVVLDEYGGTSGIVTIEDIVEELFGEIEDEHDLDEELIEQDLGEGKYLFSTRLDVEYLNE
EEEEECCCCCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHCC
TYKLMIPEEDSYGTLGGFIVNSTKEIPQKGDKIVIDRFHFKIEQASNKKIELVKMTIKE
EEEEEECCCCCCCCCCCEEECCCHHHCCCCCEEEEEEHEEEEECCCCCEEEEEEEEECC
>Mature Secondary Structure
MEISIIILCLILSAFFSGMEIAFISSNKIYLGIEKKQDNFLSQILTKLTENPSKFIASML
CCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHH
IGNNVALVVYGFYMGDVVLKWITGLGFHFSDVTTILVQTLISTFIVLITAEFFPKVFFQI
HCCCEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YANSLIKIFAVPAYLFYRLFYYVSTFFIWISDFILRKFFKTEGDQVQLYFSKVELGNYIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHH
EQMSSVEDDDEVDSEIQIFQNALEFSGVKARDIMTPRTELVAIDLFDSVTDLKELFIETG
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHEEEEHHHHHHHHHHHHHHHCC
YSKIVVSQNSLDDIVGYVHSFDLFKKPQTIKSVLMTVEFVPETILIKDALNILIKKRKNV
CCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCE
AVVLDEYGGTSGIVTIEDIVEELFGEIEDEHDLDEELIEQDLGEGKYLFSTRLDVEYLNE
EEEEECCCCCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHCC
TYKLMIPEEDSYGTLGGFIVNSTKEIPQKGDKIVIDRFHFKIEQASNKKIELVKMTIKE
EEEEEECCCCCCCCCCCEEECCCHHHCCCCCEEEEEEHEEEEECCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]