| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146299113
Identifier: 146299113
GI number: 146299113
Start: 1548579
End: 1549934
Strand: Direct
Name: 146299113
Synonym: Fjoh_1353
Alternate gene names: NA
Gene position: 1548579-1549934 (Clockwise)
Preceding gene: 146299112
Following gene: 146299114
Centisome position: 25.4
GC content: 36.28
Gene sequence:
>1356_bases ATGTTCCTTAAAACAACAAATTCTACAGACGATTGTTTTCCCAGAATCCTGCTGTTATTCTTAATTGTATTAGCATTCAA TGGTTTACAAGCGCAGGAAGTTCATGCGGTTTCATTGCAAGAAGCTTTGAAGCTGGCTAAAGAAAACAACAAAAAAATCC TTAGATCTCAATTGGAGGTCACGCTCTCAGAGCAAAACATTAAAGAAAGAAAAGAACTCCGACTGCCAGACGTACAGCTA AACGGCATGTATTCTCGAATTACGAATATTACCGAATTTAAAGGAAGCGGGTTTTTAAAAGACAAAGAAGTTACACCGGC AATTCCTGAAATCTATGAAGTCAATTCGACTTTTAAAATGCCAATTTACGCCGGAAATAAGATCAATAATGCCATCAAAA TTGCCAATCAGGAAAATGAAATTGCTAAAATAAAAACCGAAAAGGCTGAAAATGATATCGAGCTTGAAGTGGTGGCAAAC TACTTGGCAATTTATAAAATGATGGAACTTCAGAAAATATTCGAAGAAAACATCAAAGAAGAAAAAAGCCGATTGAAAGA AGTACAATCGCTTCAAAAACATGGAACGGTTACGAAAAACGAAGTTATTCGTGCCGAATTACAGCTTTCAGATCGCGAAT TGAATGCGTTAACTAACTCCAAAAACATTAAAATCGCACTTCACGATCTGAAAACGCTGATCCAGATTCCAGAAAACGAA GAAATTGCGATTGATACAACGTCGAGTTTGGACGAAATGAACGGTTTGGATCCGTATGATTTTTATATGAATAAAGCTTT GCAAAACGAAGAAATGCGTATTGCTAGCCAGGAGCTGAATATCAGTAAAACCGAACTTAAAATGGTAAAAGGAAACTATT TGCCAAGCGTTCATTTCTTTGGGAATTACGGTTTTTATTATCCAAACTATAAATTCTTTCCGCCAAATCCGTATCTGTAT ACTTTAGGACAAGTTGGTATTGAAGCCACTTTTGATCTTTCGTCTTTATATAAAAATAAAACCAAAATGGAGCAGGCGAG CACCAAAATCAAATGGCAGGAAATGCAGAATGAAATTGTAAAAGAGGAAATTCAGGACAAGTTGTATAAAGAGCATACAC AATATCAGGAAATTCTTGAAAAGTTTGTTGTGGTTGACAAAGCACTGGATTTGGCTGACGAAAATTACCGCATTGTAAAG CTGAAATACTTAAACCAGCTGGTTTTAATTACTGAAATGGTTGACGCGGATAATGCTTTGCTTCAAGCGAAATACAACAA AATTTCTACGCGATTGGATGCGGTTTTAAAACATTACGAATTGCTTCATACGGCTGGAATGCTTCCGCAGAGCTAG
Upstream 100 bases:
>100_bases ATTTTAACATTTGTCTGAAATGAATATGTTCTTGGCTTTTTAGAATTATCAGTCACCAGAAAAATGAAGGAACTTTGCAG CATCAAATATTTAATTATTC
Downstream 100 bases:
>100_bases ATGGTGAGAGATTAGGCTAAGGCCTTAGAAGCAAGAGACAAGAAAAAAGAAGTAAAAGATTAAAAAATATAGATTCAGTT CCGAAGGAACAATTCATATT
Product: outer membrane efflux protein
Products: NA
Alternate protein names: Outer Membrane Protein
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues MFLKTTNSTDDCFPRILLLFLIVLAFNGLQAQEVHAVSLQEALKLAKENNKKILRSQLEVTLSEQNIKERKELRLPDVQL NGMYSRITNITEFKGSGFLKDKEVTPAIPEIYEVNSTFKMPIYAGNKINNAIKIANQENEIAKIKTEKAENDIELEVVAN YLAIYKMMELQKIFEENIKEEKSRLKEVQSLQKHGTVTKNEVIRAELQLSDRELNALTNSKNIKIALHDLKTLIQIPENE EIAIDTTSSLDEMNGLDPYDFYMNKALQNEEMRIASQELNISKTELKMVKGNYLPSVHFFGNYGFYYPNYKFFPPNPYLY TLGQVGIEATFDLSSLYKNKTKMEQASTKIKWQEMQNEIVKEEIQDKLYKEHTQYQEILEKFVVVDKALDLADENYRIVK LKYLNQLVLITEMVDADNALLQAKYNKISTRLDAVLKHYELLHTAGMLPQS
Sequences:
>Translated_451_residues MFLKTTNSTDDCFPRILLLFLIVLAFNGLQAQEVHAVSLQEALKLAKENNKKILRSQLEVTLSEQNIKERKELRLPDVQL NGMYSRITNITEFKGSGFLKDKEVTPAIPEIYEVNSTFKMPIYAGNKINNAIKIANQENEIAKIKTEKAENDIELEVVAN YLAIYKMMELQKIFEENIKEEKSRLKEVQSLQKHGTVTKNEVIRAELQLSDRELNALTNSKNIKIALHDLKTLIQIPENE EIAIDTTSSLDEMNGLDPYDFYMNKALQNEEMRIASQELNISKTELKMVKGNYLPSVHFFGNYGFYYPNYKFFPPNPYLY TLGQVGIEATFDLSSLYKNKTKMEQASTKIKWQEMQNEIVKEEIQDKLYKEHTQYQEILEKFVVVDKALDLADENYRIVK LKYLNQLVLITEMVDADNALLQAKYNKISTRLDAVLKHYELLHTAGMLPQS >Mature_451_residues MFLKTTNSTDDCFPRILLLFLIVLAFNGLQAQEVHAVSLQEALKLAKENNKKILRSQLEVTLSEQNIKERKELRLPDVQL NGMYSRITNITEFKGSGFLKDKEVTPAIPEIYEVNSTFKMPIYAGNKINNAIKIANQENEIAKIKTEKAENDIELEVVAN YLAIYKMMELQKIFEENIKEEKSRLKEVQSLQKHGTVTKNEVIRAELQLSDRELNALTNSKNIKIALHDLKTLIQIPENE EIAIDTTSSLDEMNGLDPYDFYMNKALQNEEMRIASQELNISKTELKMVKGNYLPSVHFFGNYGFYYPNYKFFPPNPYLY TLGQVGIEATFDLSSLYKNKTKMEQASTKIKWQEMQNEIVKEEIQDKLYKEHTQYQEILEKFVVVDKALDLADENYRIVK LKYLNQLVLITEMVDADNALLQAKYNKISTRLDAVLKHYELLHTAGMLPQS
Specific function: Unknown
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52165; Mature: 52165
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLKTTNSTDDCFPRILLLFLIVLAFNGLQAQEVHAVSLQEALKLAKENNKKILRSQLEV CEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH TLSEQNIKERKELRLPDVQLNGMYSRITNITEFKGSGFLKDKEVTPAIPEIYEVNSTFKM HCCHHHHHHHHHCCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEECCCEEEE PIYAGNKINNAIKIANQENEIAKIKTEKAENDIELEVVANYLAIYKMMELQKIFEENIKE EEEECCCCCCEEEECCCCCCHHHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EKSRLKEVQSLQKHGTVTKNEVIRAELQLSDRELNALTNSKNIKIALHDLKTLIQIPENE HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHCCCCCEEEEHHHHHHHHCCCCCC EIAIDTTSSLDEMNGLDPYDFYMNKALQNEEMRIASQELNISKTELKMVKGNYLPSVHFF EEEEECCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCCEEEEE GNYGFYYPNYKFFPPNPYLYTLGQVGIEATFDLSSLYKNKTKMEQASTKIKWQEMQNEIV CCCCEECCCCEEECCCCCEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEEIQDKLYKEHTQYQEILEKFVVVDKALDLADENYRIVKLKYLNQLVLITEMVDADNAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCHH LQAKYNKISTRLDAVLKHYELLHTAGMLPQS HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MFLKTTNSTDDCFPRILLLFLIVLAFNGLQAQEVHAVSLQEALKLAKENNKKILRSQLEV CEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH TLSEQNIKERKELRLPDVQLNGMYSRITNITEFKGSGFLKDKEVTPAIPEIYEVNSTFKM HCCHHHHHHHHHCCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEECCCEEEE PIYAGNKINNAIKIANQENEIAKIKTEKAENDIELEVVANYLAIYKMMELQKIFEENIKE EEEECCCCCCEEEECCCCCCHHHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EKSRLKEVQSLQKHGTVTKNEVIRAELQLSDRELNALTNSKNIKIALHDLKTLIQIPENE HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHCCCCCEEEEHHHHHHHHCCCCCC EIAIDTTSSLDEMNGLDPYDFYMNKALQNEEMRIASQELNISKTELKMVKGNYLPSVHFF EEEEECCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCCEEEEE GNYGFYYPNYKFFPPNPYLYTLGQVGIEATFDLSSLYKNKTKMEQASTKIKWQEMQNEIV CCCCEECCCCEEECCCCCEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEEIQDKLYKEHTQYQEILEKFVVVDKALDLADENYRIVKLKYLNQLVLITEMVDADNAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCHH LQAKYNKISTRLDAVLKHYELLHTAGMLPQS HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA