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The map label for this gene is yfiF [H]

Identifier: 146299112

GI number: 146299112

Start: 1547327

End: 1548148

Strand: Direct

Name: yfiF [H]

Synonym: Fjoh_1352

Alternate gene names: 146299112

Gene position: 1547327-1548148 (Clockwise)

Preceding gene: 146299111

Following gene: 146299113

Centisome position: 25.38

GC content: 36.13

Gene sequence:

>822_bases
ATGGAACATTCCGGTCAAAAACTCGATAAATATTACATCAAGAAAGTAGATGCCGATAAAAAAAGCATTTACTGCCACCA
CGATTTGATGGGTGAATTATTTATTCCGCCACACAGACATGTTAAAGCGCAATTGCTTTATGCAGAAGGTGATGTTGTTT
TTGTGACTACAGAAACCAAAACGTACTTTTTGCCAGCAAGGCATTTTATCTGGATTCCGAGTGGAGTGGAGCATAGCATC
GAACCGAAATCGGAAAGTGTGACGATGCGAAATTTATACTTTCCTGTTGAAAAAGACGAAAATGACTTTTATAAAGTAGA
AGGAATTTATCCAGTTAATAACTTATTGCTGCAAATGATGCTTTTTACCAATCGATGGAACGGTGATCTTAAAAAAGGAA
CTCCGAACTTTGCCATTGCTAAAGCGATAAAAGCGATTCTTCCACAAATATGTACCAATAACCTTCCTTTAGAATTACCA
CAGCCAAAAGACAAACGACTTAGTAAAATCCTTCGTTATATTGAAAATAACCTCGGAGAAACGATTCTTTTTGCTGATGT
AGCTCACGAATTCGGTTTCAGCGAACGCTCTTTGTATCGTTTGTTTCAAAAAGATCTGGGCATGTCGTTTATTCAATATT
ATACTATTAGAAGAATTTTAAAAGCAATCGAACTTTTATTAGAAAGAAAGCTTTCGGTAAAAGAGGTAGCCGAAGAAGTT
GGTTACAATAGTGTTCCGACTTTCAGCAACACTTTCTTCAAAATTTTAGGCCAAAGACCTTCCGATTACTTAAACGGTGA
GGAGATTTTAGAACGTAAATAA

Upstream 100 bases:

>100_bases
TAATCAAGTGTTGTTAGGTTATCATAAGGCTGTGGCGAGGCTTTCTCATGAAGAAGAGTAAAATTCTAGAAGATTAAGGG
ATATCTTTCTTGTTTGATTT

Downstream 100 bases:

>100_bases
AAATTTTGTTTCACGCAGATTTATAAAGATTTGGGCAGATTCAACAGATATTTTTAACAAATAGAAACATAGTTTTTATT
GTGTTGAAAGGCGTTTCACT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MEHSGQKLDKYYIKKVDADKKSIYCHHDLMGELFIPPHRHVKAQLLYAEGDVVFVTTETKTYFLPARHFIWIPSGVEHSI
EPKSESVTMRNLYFPVEKDENDFYKVEGIYPVNNLLLQMMLFTNRWNGDLKKGTPNFAIAKAIKAILPQICTNNLPLELP
QPKDKRLSKILRYIENNLGETILFADVAHEFGFSERSLYRLFQKDLGMSFIQYYTIRRILKAIELLLERKLSVKEVAEEV
GYNSVPTFSNTFFKILGQRPSDYLNGEEILERK

Sequences:

>Translated_273_residues
MEHSGQKLDKYYIKKVDADKKSIYCHHDLMGELFIPPHRHVKAQLLYAEGDVVFVTTETKTYFLPARHFIWIPSGVEHSI
EPKSESVTMRNLYFPVEKDENDFYKVEGIYPVNNLLLQMMLFTNRWNGDLKKGTPNFAIAKAIKAILPQICTNNLPLELP
QPKDKRLSKILRYIENNLGETILFADVAHEFGFSERSLYRLFQKDLGMSFIQYYTIRRILKAIELLLERKLSVKEVAEEV
GYNSVPTFSNTFFKILGQRPSDYLNGEEILERK
>Mature_273_residues
MEHSGQKLDKYYIKKVDADKKSIYCHHDLMGELFIPPHRHVKAQLLYAEGDVVFVTTETKTYFLPARHFIWIPSGVEHSI
EPKSESVTMRNLYFPVEKDENDFYKVEGIYPVNNLLLQMMLFTNRWNGDLKKGTPNFAIAKAIKAILPQICTNNLPLELP
QPKDKRLSKILRYIENNLGETILFADVAHEFGFSERSLYRLFQKDLGMSFIQYYTIRRILKAIELLLERKLSVKEVAEEV
GYNSVPTFSNTFFKILGQRPSDYLNGEEILERK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31845; Mature: 31845

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHSGQKLDKYYIKKVDADKKSIYCHHDLMGELFIPPHRHVKAQLLYAEGDVVFVTTETK
CCCCCHHHHHHHHHHCCCCCCEEEECHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCE
TYFLPARHFIWIPSGVEHSIEPKSESVTMRNLYFPVEKDENDFYKVEGIYPVNNLLLQMM
EEEECCCEEEECCCCCCCCCCCCCCCEEEEHEEECCCCCCCCEEEEEECCCHHHHHHHHH
LFTNRWNGDLKKGTPNFAIAKAIKAILPQICTNNLPLELPQPKDKRLSKILRYIENNLGE
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
TILFADVAHEFGFSERSLYRLFQKDLGMSFIQYYTIRRILKAIELLLERKLSVKEVAEEV
EEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
GYNSVPTFSNTFFKILGQRPSDYLNGEEILERK
CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCC
>Mature Secondary Structure
MEHSGQKLDKYYIKKVDADKKSIYCHHDLMGELFIPPHRHVKAQLLYAEGDVVFVTTETK
CCCCCHHHHHHHHHHCCCCCCEEEECHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCE
TYFLPARHFIWIPSGVEHSIEPKSESVTMRNLYFPVEKDENDFYKVEGIYPVNNLLLQMM
EEEECCCEEEECCCCCCCCCCCCCCCEEEEHEEECCCCCCCCEEEEEECCCHHHHHHHHH
LFTNRWNGDLKKGTPNFAIAKAIKAILPQICTNNLPLELPQPKDKRLSKILRYIENNLGE
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
TILFADVAHEFGFSERSLYRLFQKDLGMSFIQYYTIRRILKAIELLLERKLSVKEVAEEV
EEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
GYNSVPTFSNTFFKILGQRPSDYLNGEEILERK
CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704981; 9384377 [H]