Click here to switch to the map view.

The map label for this gene is yabD [H]

Identifier: 146299038

GI number: 146299038

Start: 1461078

End: 1461857

Strand: Direct

Name: yabD [H]

Synonym: Fjoh_1278

Alternate gene names: 146299038

Gene position: 1461078-1461857 (Clockwise)

Preceding gene: 146299037

Following gene: 146299039

Centisome position: 23.96

GC content: 34.49

Gene sequence:

>780_bases
TTGAATTCAACACCCATTATTACCGATACACACACTCATTTATATTCTGAAGAATTTGATCAGGATCGTAACGAAATGAT
TCAACGCGCCATTGATGCCGGAGTTACTCGTTTTTTTATTCCAGCAATCGATGCAGCGGCGACACAATCGATGTACGATT
TAGAGAAAAATTATCCTGATAACATTTTCCTGATGATGGGATTGCATCCAACCTACGTAAAGGATAATTATGAAGCAGAA
TTAGCCCATGTTGAAACCGAATTATCTAAGCGAAAATTCTATGCAGTAGGCGAAATAGGAATCGATTTGTATTGGGATAA
AACACATTTAAAAGAGCAGCAAATTGCTTTTAAAAGACAAATTCACCTGGCAAAACAATACAAATTGCCAATCGTAATTC
ACTGTCGCGAAGCTTTTGATGAAATATTCGAAATTTTAGAAGAAGAAAAATCTGAAGATTTATTTGGGATTTTTCATTGT
TTTTCCGGAACTTTAGAACAAGCATTGCAGGCCATTTCTTATAATATGAAATTAGGAATTGGCGGTGTTGTGACTTTTAA
GAACGGAAAAATTGATCAGTTTTTAAATCAAATCGATTTAAAACACATCGTTCTTGAAACAGATTCTCCATATTTAGCAC
CAATTCCGTATAGAGGAAAAAGAAACGAAAGCAGCTATCTAGTCAACGTAATAGCTAAATTAAGCGAAGTATATGGCGTT
TCTGCAGAAGAAATAGCAGTAATCACAACACAAAACTCAAAAGACGTTTTTGGGATTTAA

Upstream 100 bases:

>100_bases
ACAAAAAGAATAAAAAAATCCGTTTTATCCGTGTGCCATTTCACACGAAATTGCTATTCTTTTAATATTGTCGTAATTTT
GGCATTTTAAAATTAGAGCC

Downstream 100 bases:

>100_bases
CCTGTGCCTTACAAAACTTTAATTTTTTTTTTGTTCTTTTGCCCACTTAAAACCTATATAAATAATGCAGAAATTTGATG
CCATTCGACCTTTTTATGAT

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNSTPIITDTHTHLYSEEFDQDRNEMIQRAIDAGVTRFFIPAIDAAATQSMYDLEKNYPDNIFLMMGLHPTYVKDNYEAE
LAHVETELSKRKFYAVGEIGIDLYWDKTHLKEQQIAFKRQIHLAKQYKLPIVIHCREAFDEIFEILEEEKSEDLFGIFHC
FSGTLEQALQAISYNMKLGIGGVVTFKNGKIDQFLNQIDLKHIVLETDSPYLAPIPYRGKRNESSYLVNVIAKLSEVYGV
SAEEIAVITTQNSKDVFGI

Sequences:

>Translated_259_residues
MNSTPIITDTHTHLYSEEFDQDRNEMIQRAIDAGVTRFFIPAIDAAATQSMYDLEKNYPDNIFLMMGLHPTYVKDNYEAE
LAHVETELSKRKFYAVGEIGIDLYWDKTHLKEQQIAFKRQIHLAKQYKLPIVIHCREAFDEIFEILEEEKSEDLFGIFHC
FSGTLEQALQAISYNMKLGIGGVVTFKNGKIDQFLNQIDLKHIVLETDSPYLAPIPYRGKRNESSYLVNVIAKLSEVYGV
SAEEIAVITTQNSKDVFGI
>Mature_259_residues
MNSTPIITDTHTHLYSEEFDQDRNEMIQRAIDAGVTRFFIPAIDAAATQSMYDLEKNYPDNIFLMMGLHPTYVKDNYEAE
LAHVETELSKRKFYAVGEIGIDLYWDKTHLKEQQIAFKRQIHLAKQYKLPIVIHCREAFDEIFEILEEEKSEDLFGIFHC
FSGTLEQALQAISYNMKLGIGGVVTFKNGKIDQFLNQIDLKHIVLETDSPYLAPIPYRGKRNESSYLVNVIAKLSEVYGV
SAEEIAVITTQNSKDVFGI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=263, Percent_Identity=26.9961977186312, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI110349734, Length=263, Percent_Identity=26.9961977186312, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI226061853, Length=270, Percent_Identity=26.2962962962963, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI226061614, Length=253, Percent_Identity=26.8774703557312, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI225903424, Length=159, Percent_Identity=33.9622641509434, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI14042943, Length=266, Percent_Identity=26.3157894736842, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI225903439, Length=225, Percent_Identity=27.1111111111111, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI226061595, Length=227, Percent_Identity=25.5506607929515, Blast_Score=79, Evalue=4e-15,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=32.421875, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=29.9610894941634, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI48994985, Length=258, Percent_Identity=27.906976744186, Blast_Score=121, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17559024, Length=280, Percent_Identity=25.7142857142857, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=269, Percent_Identity=26.0223048327138, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17565396, Length=223, Percent_Identity=30.4932735426009, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17543026, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24648690, Length=285, Percent_Identity=25.2631578947368, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24586117, Length=285, Percent_Identity=23.1578947368421, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221330018, Length=285, Percent_Identity=23.859649122807, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29698; Mature: 29698

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSTPIITDTHTHLYSEEFDQDRNEMIQRAIDAGVTRFFIPAIDAAATQSMYDLEKNYPD
CCCCCEEECCHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCC
NIFLMMGLHPTYVKDNYEAELAHVETELSKRKFYAVGEIGIDLYWDKTHLKEQQIAFKRQ
CEEEEECCCCCEECCCCCHHHHHHHHHHHHHHEEEEEEECEEEEECHHHHHHHHHHHHHH
IHLAKQYKLPIVIHCREAFDEIFEILEEEKSEDLFGIFHCFSGTLEQALQAISYNMKLGI
HHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECC
GGVVTFKNGKIDQFLNQIDLKHIVLETDSPYLAPIPYRGKRNESSYLVNVIAKLSEVYGV
CEEEEECCCCHHHHHHHHCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
SAEEIAVITTQNSKDVFGI
CHHHEEEEEECCCCCCCCC
>Mature Secondary Structure
MNSTPIITDTHTHLYSEEFDQDRNEMIQRAIDAGVTRFFIPAIDAAATQSMYDLEKNYPD
CCCCCEEECCHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCC
NIFLMMGLHPTYVKDNYEAELAHVETELSKRKFYAVGEIGIDLYWDKTHLKEQQIAFKRQ
CEEEEECCCCCEECCCCCHHHHHHHHHHHHHHEEEEEEECEEEEECHHHHHHHHHHHHHH
IHLAKQYKLPIVIHCREAFDEIFEILEEEKSEDLFGIFHCFSGTLEQALQAISYNMKLGI
HHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECC
GGVVTFKNGKIDQFLNQIDLKHIVLETDSPYLAPIPYRGKRNESSYLVNVIAKLSEVYGV
CEEEEECCCCHHHHHHHHCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
SAEEIAVITTQNSKDVFGI
CHHHEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]