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The map label for this gene is araA

Identifier: 146298882

GI number: 146298882

Start: 1266535

End: 1268043

Strand: Direct

Name: araA

Synonym: Fjoh_1121

Alternate gene names: 146298882

Gene position: 1266535-1268043 (Clockwise)

Preceding gene: 146298881

Following gene: 146298883

Centisome position: 20.77

GC content: 38.3

Gene sequence:

>1509_bases
ATGATAGATATATCTCAAAAAGAAGTATGGTTTGTAGTAGGAAGCCAAGAATTATACGGTGAAGAAACACTAAGAAAAGT
AGCAGAACATTCACAGATTATTGCAAAAGGATTAGACGCTTCGTCTTCAATTCCGGTAAAAGTGGTTTACAAAGATGTGG
TAAAATCGCCTTCGCAGATTTTAGATGTTTGTCTGGCGGCAAACTCTGCTAAAAATTGTATCGGAATTATTGCCTGGATG
CATACTTTTTCACCTGCAAAAATGTGGATTGGCGGTTTAAATATTCTTAAAAAACCATTATGTCATTTACATACACAATA
CAATGCTGAAATTCCGTGGGGATCTATCGACATGGATTTCATGAACTTAAACCAATCGGCTCACGGAGATCGTGAATTTG
GTTTTATCATGTCAAGATTACGCAAAAAACGTAAAGTTGTGGTTGGACACTGGGAAGATCAAAGAGTTCAAAAACAATTA
GGAATCTGGTCAAGAGTGGTTCTTGGATGGGACGAACTTCAAAACTTAAAAGTAGCTCGTATTGGAGATAATATGCGTGA
AGTTGCCGTAACGGAAGGAGACAAAGTAGAAGCTCAAATTCGTTTTGGAATGTCTGTAAACGGATACGATTCTTCAGATG
TTACCAAACATATCGAGAAAGTAACAGATAAACAATTAGCTGATTTATTAGCAGTTTATGAGTCTTCTTATAACTTAACA
GATTCTTTAAAAGAAGGGGGAGCGCAAAGAAGTTCTTTGGTTGAAGCGGCAAAAATCGAATTAGGATTAAGAGCTTTCCT
TGAAGAAGGAGGATTTGGTGCTTTTACAGATACATTTGAAAACCTTGGAGTTTGGAAACAATTACCAGGAATCGCAACAC
AAAGATTAATGGCCGATGGTTACGGTTTTGGAGGCGAAGGAGATTGGAAAACCGCTGCAATGGTAAGAGCTTTAAAAGTA
ATGTGTATTGGTCTTGAAGGCGGAACTTCTTTCATGGAAGATTATACGTATAATTTCACACCTCAAAAATCGTATGTTTT
AGGTTCTCACATGTTGGAAATCTGCCCATCGATTGCTGATGGAAAACCTTCTTGTGAAGTGCACCCATTAGGAATTGGCG
GAAAAGAAGATCCGGCTCGTTTGGTATTTAATTCGCCTGCAGGTGATGCGATCAATGTATCTTTGGTTGATATGGGAACT
CGTTTCCGTTTAATTGTAAACGAAGTAGAAGCAGTTAAACCAATGGCAGAATTACCAAAACTTCCTGTAGCACGCGTTCT
TTGGGATTGTAAGCCAAATTTAGAAGTTGCAGCAACAGCCTGGATTCTTGCCGGAGGAGCGCACCACACGGTTTACAGCC
AGTCAATCACAACAGAATATATGGAAGATTTCGCAGATATTGCTGGAATTGAGTTGTTAGTTATAGACGAAAAAACAACC
GTAAGAGAGTTTAAAGATAAGATTAATGCTAACGAAGCGTATTTCCATTTGTTTCAGCATGGACTTTAA

Upstream 100 bases:

>100_bases
AAAATAGAATAAAGAACAAAGAGAAAAGATTTTCGTTAATCGTGGATTTTTAGACAAAGAAAAACGATTTGACGATTAAA
CAAATAAACGATTAAACAAC

Downstream 100 bases:

>100_bases
ATTAGTCAAAAGCCGAAAGTCATAAAGTCCGAAAGTTTTAGTTACTTTGGAGAAAAGACTTATGACTTTTGATTTTAAGA
CTTTACTAACTTAAAAAATT

Product: L-arabinose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MIDISQKEVWFVVGSQELYGEETLRKVAEHSQIIAKGLDASSSIPVKVVYKDVVKSPSQILDVCLAANSAKNCIGIIAWM
HTFSPAKMWIGGLNILKKPLCHLHTQYNAEIPWGSIDMDFMNLNQSAHGDREFGFIMSRLRKKRKVVVGHWEDQRVQKQL
GIWSRVVLGWDELQNLKVARIGDNMREVAVTEGDKVEAQIRFGMSVNGYDSSDVTKHIEKVTDKQLADLLAVYESSYNLT
DSLKEGGAQRSSLVEAAKIELGLRAFLEEGGFGAFTDTFENLGVWKQLPGIATQRLMADGYGFGGEGDWKTAAMVRALKV
MCIGLEGGTSFMEDYTYNFTPQKSYVLGSHMLEICPSIADGKPSCEVHPLGIGGKEDPARLVFNSPAGDAINVSLVDMGT
RFRLIVNEVEAVKPMAELPKLPVARVLWDCKPNLEVAATAWILAGGAHHTVYSQSITTEYMEDFADIAGIELLVIDEKTT
VREFKDKINANEAYFHLFQHGL

Sequences:

>Translated_502_residues
MIDISQKEVWFVVGSQELYGEETLRKVAEHSQIIAKGLDASSSIPVKVVYKDVVKSPSQILDVCLAANSAKNCIGIIAWM
HTFSPAKMWIGGLNILKKPLCHLHTQYNAEIPWGSIDMDFMNLNQSAHGDREFGFIMSRLRKKRKVVVGHWEDQRVQKQL
GIWSRVVLGWDELQNLKVARIGDNMREVAVTEGDKVEAQIRFGMSVNGYDSSDVTKHIEKVTDKQLADLLAVYESSYNLT
DSLKEGGAQRSSLVEAAKIELGLRAFLEEGGFGAFTDTFENLGVWKQLPGIATQRLMADGYGFGGEGDWKTAAMVRALKV
MCIGLEGGTSFMEDYTYNFTPQKSYVLGSHMLEICPSIADGKPSCEVHPLGIGGKEDPARLVFNSPAGDAINVSLVDMGT
RFRLIVNEVEAVKPMAELPKLPVARVLWDCKPNLEVAATAWILAGGAHHTVYSQSITTEYMEDFADIAGIELLVIDEKTT
VREFKDKINANEAYFHLFQHGL
>Mature_502_residues
MIDISQKEVWFVVGSQELYGEETLRKVAEHSQIIAKGLDASSSIPVKVVYKDVVKSPSQILDVCLAANSAKNCIGIIAWM
HTFSPAKMWIGGLNILKKPLCHLHTQYNAEIPWGSIDMDFMNLNQSAHGDREFGFIMSRLRKKRKVVVGHWEDQRVQKQL
GIWSRVVLGWDELQNLKVARIGDNMREVAVTEGDKVEAQIRFGMSVNGYDSSDVTKHIEKVTDKQLADLLAVYESSYNLT
DSLKEGGAQRSSLVEAAKIELGLRAFLEEGGFGAFTDTFENLGVWKQLPGIATQRLMADGYGFGGEGDWKTAAMVRALKV
MCIGLEGGTSFMEDYTYNFTPQKSYVLGSHMLEICPSIADGKPSCEVHPLGIGGKEDPARLVFNSPAGDAINVSLVDMGT
RFRLIVNEVEAVKPMAELPKLPVARVLWDCKPNLEVAATAWILAGGAHHTVYSQSITTEYMEDFADIAGIELLVIDEKTT
VREFKDKINANEAYFHLFQHGL

Specific function: Catalyzes the conversion of L-arabinose to L-ribulose

COG id: COG2160

COG function: function code G; L-arabinose isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the arabinose isomerase family

Homologues:

Organism=Escherichia coli, GI1786248, Length=496, Percent_Identity=53.4274193548387, Blast_Score=570, Evalue=1e-164,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARAA_FLAJ1 (A5FKW3)

Other databases:

- EMBL:   CP000685
- RefSeq:   YP_001193473.1
- ProteinModelPortal:   A5FKW3
- SMR:   A5FKW3
- STRING:   A5FKW3
- GeneID:   5090199
- GenomeReviews:   CP000685_GR
- KEGG:   fjo:Fjoh_1121
- eggNOG:   COG2160
- HOGENOM:   HBG297198
- OMA:   EVCPTIA
- ProtClustDB:   PRK02929
- BioCyc:   FJOH376686:FJOH_1121-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00519
- InterPro:   IPR004216
- InterPro:   IPR009015
- InterPro:   IPR003762
- PIRSF:   PIRSF001478
- ProDom:   PD018364

Pfam domain/function: PF02610 Arabinose_Isome; SSF50443 Fuc_isomerase_C; SSF53743 Fuc_isomerase_N

EC number: =5.3.1.4

Molecular weight: Translated: 55639; Mature: 55639

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDISQKEVWFVVGSQELYGEETLRKVAEHSQIIAKGLDASSSIPVKVVYKDVVKSPSQI
CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHCCHHHH
LDVCLAANSAKNCIGIIAWMHTFSPAKMWIGGLNILKKPLCHLHTQYNAEIPWGSIDMDF
HHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
MNLNQSAHGDREFGFIMSRLRKKRKVVVGHWEDQRVQKQLGIWSRVVLGWDELQNLKVAR
EECCCCCCCCHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCHHHHHHCCHHHHHCCEEEE
IGDNMREVAVTEGDKVEAQIRFGMSVNGYDSSDVTKHIEKVTDKQLADLLAVYESSYNLT
CCCCCHHEEECCCCCEEEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DSLKEGGAQRSSLVEAAKIELGLRAFLEEGGFGAFTDTFENLGVWKQLPGIATQRLMADG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHCCCHHHHHHHHCC
YGFGGEGDWKTAAMVRALKVMCIGLEGGTSFMEDYTYNFTPQKSYVLGSHMLEICPSIAD
CCCCCCCCHHHHHHHHHHHHHEEECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
GKPSCEVHPLGIGGKEDPARLVFNSPAGDAINVSLVDMGTRFRLIVNEVEAVKPMAELPK
CCCCCEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHCCHHHCCC
LPVARVLWDCKPNLEVAATAWILAGGAHHTVYSQSITTEYMEDFADIAGIELLVIDEKTT
CCHHHHHHCCCCCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCEEEEEECCCHH
VREFKDKINANEAYFHLFQHGL
HHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MIDISQKEVWFVVGSQELYGEETLRKVAEHSQIIAKGLDASSSIPVKVVYKDVVKSPSQI
CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHCCHHHH
LDVCLAANSAKNCIGIIAWMHTFSPAKMWIGGLNILKKPLCHLHTQYNAEIPWGSIDMDF
HHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
MNLNQSAHGDREFGFIMSRLRKKRKVVVGHWEDQRVQKQLGIWSRVVLGWDELQNLKVAR
EECCCCCCCCHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCHHHHHHCCHHHHHCCEEEE
IGDNMREVAVTEGDKVEAQIRFGMSVNGYDSSDVTKHIEKVTDKQLADLLAVYESSYNLT
CCCCCHHEEECCCCCEEEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DSLKEGGAQRSSLVEAAKIELGLRAFLEEGGFGAFTDTFENLGVWKQLPGIATQRLMADG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHCCCHHHHHHHHCC
YGFGGEGDWKTAAMVRALKVMCIGLEGGTSFMEDYTYNFTPQKSYVLGSHMLEICPSIAD
CCCCCCCCHHHHHHHHHHHHHEEECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
GKPSCEVHPLGIGGKEDPARLVFNSPAGDAINVSLVDMGTRFRLIVNEVEAVKPMAELPK
CCCCCEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHCCHHHCCC
LPVARVLWDCKPNLEVAATAWILAGGAHHTVYSQSITTEYMEDFADIAGIELLVIDEKTT
CCHHHHHHCCCCCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCEEEEEECCCHH
VREFKDKINANEAYFHLFQHGL
HHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA