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The map label for this gene is rbfA

Identifier: 146298830

GI number: 146298830

Start: 1212382

End: 1212774

Strand: Direct

Name: rbfA

Synonym: Fjoh_1069

Alternate gene names: 146298830

Gene position: 1212382-1212774 (Clockwise)

Preceding gene: 146298828

Following gene: 146298831

Centisome position: 19.89

GC content: 32.57

Gene sequence:

>393_bases
ATGGAAACAAATAGACAGAAAAAAATAGGCAGCGTAATTCAGAAAGATCTGGTTGATATTCTGCAAGGTGAAGTGAGAAA
AAACGGAGTTAGCAATTTGGTAATTTCAGTATCCAAAGTTAGTGTAACCTCAGATTTATCTGTGGCAACAGTATATTTAA
GCATTTTTCCACAAGAAAAAGCAAAAGAAACTTTAGAAGGAATAAAATCAAATACCACTTTAATTAAACATGATTTATCA
CAGCGAGTTCGTTTGCAATTACGCCGTGTGCCAAATTTAGTTTTCTTTATCGATGACTCTCTGGATTATATCGAGAAAAT
TGACAATGCATTAGCAGGAAAAGAAAACCCAATAGAAAACCGTGATCTTTTAGACAAAAGAAGAAAATCATAA

Upstream 100 bases:

>100_bases
TAAATGAAATAAAAAGGAGATATAAAAGATAAATTTTGAGAATAATCCTTTAGTTAATTGAAATTGCGGCGAATGAATTT
AAAAATAGTATTTTTGCACT

Downstream 100 bases:

>100_bases
ATTGAATTTCCCATTTTACATAGCCAAACGTTATATTTTTAGCCGAAGTAAAAACAACGCTATTAATATCATTAATTACA
TTGCCAGCATGGGAATCATT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
METNRQKKIGSVIQKDLVDILQGEVRKNGVSNLVISVSKVSVTSDLSVATVYLSIFPQEKAKETLEGIKSNTTLIKHDLS
QRVRLQLRRVPNLVFFIDDSLDYIEKIDNALAGKENPIENRDLLDKRRKS

Sequences:

>Translated_130_residues
METNRQKKIGSVIQKDLVDILQGEVRKNGVSNLVISVSKVSVTSDLSVATVYLSIFPQEKAKETLEGIKSNTTLIKHDLS
QRVRLQLRRVPNLVFFIDDSLDYIEKIDNALAGKENPIENRDLLDKRRKS
>Mature_130_residues
METNRQKKIGSVIQKDLVDILQGEVRKNGVSNLVISVSKVSVTSDLSVATVYLSIFPQEKAKETLEGIKSNTTLIKHDLS
QRVRLQLRRVPNLVFFIDDSLDYIEKIDNALAGKENPIENRDLLDKRRKS

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_FLAJ1 (A5FL10)

Other databases:

- EMBL:   CP000685
- RefSeq:   YP_001193421.1
- ProteinModelPortal:   A5FL10
- SMR:   A5FL10
- STRING:   A5FL10
- GeneID:   5091799
- GenomeReviews:   CP000685_GR
- KEGG:   fjo:Fjoh_1069
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   RRTEKVA
- ProtClustDB:   CLSK2298363
- BioCyc:   FJOH376686:FJOH_1069-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14735; Mature: 14735

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METNRQKKIGSVIQKDLVDILQGEVRKNGVSNLVISVSKVSVTSDLSVATVYLSIFPQEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEHHHHCCCCCHHHHHHHHHHCCCHH
AKETLEGIKSNTTLIKHDLSQRVRLQLRRVPNLVFFIDDSLDYIEKIDNALAGKENPIEN
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCC
RDLLDKRRKS
HHHHHHHCCC
>Mature Secondary Structure
METNRQKKIGSVIQKDLVDILQGEVRKNGVSNLVISVSKVSVTSDLSVATVYLSIFPQEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEHHHHCCCCCHHHHHHHHHHCCCHH
AKETLEGIKSNTTLIKHDLSQRVRLQLRRVPNLVFFIDDSLDYIEKIDNALAGKENPIEN
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCC
RDLLDKRRKS
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA