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The map label for this gene is ctpA [H]

Identifier: 146298733

GI number: 146298733

Start: 1086839

End: 1088476

Strand: Direct

Name: ctpA [H]

Synonym: Fjoh_0972

Alternate gene names: 146298733

Gene position: 1086839-1088476 (Clockwise)

Preceding gene: 146298732

Following gene: 146298734

Centisome position: 17.83

GC content: 36.63

Gene sequence:

>1638_bases
ATGAATCGTTATTTCAAAAAGAAATTCATTATACCAGCTGTTGCTGCAGGTTTTTTATTTATTGGAACCAGTTTCAAAGA
GGACTTTTTTGAGATTGCCAAGCAAATTGAAATCTTCACAACCTTATTCAAAGCCGTAAACACGAATTATGTAGACGAAA
CCAATCCGGGTGATTTGATGGACAAAGCCATTAAAAGCATGCTGGGAAGTTTAGACCCGTACACGGTTTATTTTAACGAA
CAGGATGTTGTAAATTTTAAAATCAACAATACGGGAGAATATACGGGAATTGGCGCCATGATTGCCCGCAAAAAAGACCG
CCTGATTGTTCGCGAACCTTATAAAAATTATCCGGCAGACAAAGCAGGATTAAAAGCGGGTGACGAAATTATACAAATTG
GTGATGTTTTAATTGCTGATTTTAAAGATGATGCTTCGCAGCTGCTGAAAGGAACTAAAAACACAAAGATCTCAATAAAA
TACCTGCGTCAGGGAAAAACGTATACGACAGAACTGGTTTTGGACGAAGTCGATATTAAATCGGTTCCGTTTTATGGAAA
AATCGATGAGAAAACCGGATATATTGTTCTGGCACATTTTAGCAGAAAGGCTTCTGCCGAAGTTAAAGATGCATTGGAAA
AATTAAAAGCGGACGGTGCCACTCAAATTGTTCTGGATTTAAGAGGTAATCCGGGCGGACTTTTAAATGAAGCTATTGAT
ATTTGTAATTTGTTTGTTCCAAAAAATGAAGTTATTGTAACGACAAAATCAAGAATTGAAAAACACAATAACACTTATAA
AACAACAAAAGAACCAATTGATACTCAGATTCCGCTTGCTATTTTGGTAAATGGAAGAAGTGCATCGGCATCTGAAATCG
TATCGGGAGCTTTGCAGGATCTAGACCGTGCTGTAGTTTTAGGAAGCAGAAGTTTTGGTAAAGGTTTAGTACAGCGTTCT
GTTGATTTGACTTACGGAACTCAGTTGAAGGTTACGATTTCCCGTTACTACACTCCATCAGGACGATGCATACAGGCACT
TGATTATGCGCACAAAGATAAAAACGGTGTTGCCCAAAAAACAGATGCGAAAAATTTTAATGCTTTTAAAACCCGAAAAG
GAAGAACGGTTTATGACGGCGGCGGTGTTTTACCGGACATTGAACTTGAAGAAGCCAAAATGAGCCCCATTACGAGCGCT
CTGTTGAAAAATGACGGGATATTTGACTACGCAACATCTTATTACTATAAAAACCCAAATCTGGGCGAAAAAATACCCGT
TGTTACTGATGCTGATTATTCGGCCTTCAAACAATACTTAAAAGCGAACAAAATTAGTTTTGATACCGAAACTGAAGTTG
CTTTAAAAAATACTTTGGCAGCAGCCAAAAATGAAAAAATTGACGAGACTATTGCTCCCGAATATCAACAATTATTAGCC
GCATTAGAGAAAAGTGAGAATACGCTCCTTGACAAAAACCAAAAAGAAATTAGAGGTTTAATTCAGGAAGAGCTTATTAA
AAGATACCAATACCAGGAAGGTTTGTATCAGTTATACATTAAGAACAATTCAGAAATTAAGAGAGCAGTAAACGTATTGA
ATAATCAAACTGAATATAAAACGATTTTAAAAATGTAG

Upstream 100 bases:

>100_bases
ATTTCTTAATTTCGCTGATCAGCGTTTGGCCGTTTATTATTATATTTTGTGTATTAGCCTATTTTATTAGAAAAAGATTT
AAAAGAAAAAAACAACAATC

Downstream 100 bases:

>100_bases
AAAATGAAACTTTCCCGGGTCCTTTTTTTGTTTATTATTTACAATTTAGCGGCACAGCAAAAACCAATCGAAACCGTATA
TTTTGATTTCGACAAATACA

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MNRYFKKKFIIPAVAAGFLFIGTSFKEDFFEIAKQIEIFTTLFKAVNTNYVDETNPGDLMDKAIKSMLGSLDPYTVYFNE
QDVVNFKINNTGEYTGIGAMIARKKDRLIVREPYKNYPADKAGLKAGDEIIQIGDVLIADFKDDASQLLKGTKNTKISIK
YLRQGKTYTTELVLDEVDIKSVPFYGKIDEKTGYIVLAHFSRKASAEVKDALEKLKADGATQIVLDLRGNPGGLLNEAID
ICNLFVPKNEVIVTTKSRIEKHNNTYKTTKEPIDTQIPLAILVNGRSASASEIVSGALQDLDRAVVLGSRSFGKGLVQRS
VDLTYGTQLKVTISRYYTPSGRCIQALDYAHKDKNGVAQKTDAKNFNAFKTRKGRTVYDGGGVLPDIELEEAKMSPITSA
LLKNDGIFDYATSYYYKNPNLGEKIPVVTDADYSAFKQYLKANKISFDTETEVALKNTLAAAKNEKIDETIAPEYQQLLA
ALEKSENTLLDKNQKEIRGLIQEELIKRYQYQEGLYQLYIKNNSEIKRAVNVLNNQTEYKTILKM

Sequences:

>Translated_545_residues
MNRYFKKKFIIPAVAAGFLFIGTSFKEDFFEIAKQIEIFTTLFKAVNTNYVDETNPGDLMDKAIKSMLGSLDPYTVYFNE
QDVVNFKINNTGEYTGIGAMIARKKDRLIVREPYKNYPADKAGLKAGDEIIQIGDVLIADFKDDASQLLKGTKNTKISIK
YLRQGKTYTTELVLDEVDIKSVPFYGKIDEKTGYIVLAHFSRKASAEVKDALEKLKADGATQIVLDLRGNPGGLLNEAID
ICNLFVPKNEVIVTTKSRIEKHNNTYKTTKEPIDTQIPLAILVNGRSASASEIVSGALQDLDRAVVLGSRSFGKGLVQRS
VDLTYGTQLKVTISRYYTPSGRCIQALDYAHKDKNGVAQKTDAKNFNAFKTRKGRTVYDGGGVLPDIELEEAKMSPITSA
LLKNDGIFDYATSYYYKNPNLGEKIPVVTDADYSAFKQYLKANKISFDTETEVALKNTLAAAKNEKIDETIAPEYQQLLA
ALEKSENTLLDKNQKEIRGLIQEELIKRYQYQEGLYQLYIKNNSEIKRAVNVLNNQTEYKTILKM
>Mature_545_residues
MNRYFKKKFIIPAVAAGFLFIGTSFKEDFFEIAKQIEIFTTLFKAVNTNYVDETNPGDLMDKAIKSMLGSLDPYTVYFNE
QDVVNFKINNTGEYTGIGAMIARKKDRLIVREPYKNYPADKAGLKAGDEIIQIGDVLIADFKDDASQLLKGTKNTKISIK
YLRQGKTYTTELVLDEVDIKSVPFYGKIDEKTGYIVLAHFSRKASAEVKDALEKLKADGATQIVLDLRGNPGGLLNEAID
ICNLFVPKNEVIVTTKSRIEKHNNTYKTTKEPIDTQIPLAILVNGRSASASEIVSGALQDLDRAVVLGSRSFGKGLVQRS
VDLTYGTQLKVTISRYYTPSGRCIQALDYAHKDKNGVAQKTDAKNFNAFKTRKGRTVYDGGGVLPDIELEEAKMSPITSA
LLKNDGIFDYATSYYYKNPNLGEKIPVVTDADYSAFKQYLKANKISFDTETEVALKNTLAAAKNEKIDETIAPEYQQLLA
ALEKSENTLLDKNQKEIRGLIQEELIKRYQYQEGLYQLYIKNNSEIKRAVNVLNNQTEYKTILKM

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=325, Percent_Identity=29.8461538461538, Blast_Score=126, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 61102; Mature: 61102

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYFKKKFIIPAVAAGFLFIGTSFKEDFFEIAKQIEIFTTLFKAVNTNYVDETNPGDLM
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
DKAIKSMLGSLDPYTVYFNEQDVVNFKINNTGEYTGIGAMIARKKDRLIVREPYKNYPAD
HHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEECCCCCCCCC
KAGLKAGDEIIQIGDVLIADFKDDASQLLKGTKNTKISIKYLRQGKTYTTELVLDEVDIK
HHCCCCCHHHHHHHHEEEECCHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
SVPFYGKIDEKTGYIVLAHFSRKASAEVKDALEKLKADGATQIVLDLRGNPGGLLNEAID
CCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
ICNLFVPKNEVIVTTKSRIEKHNNTYKTTKEPIDTQIPLAILVNGRSASASEIVSGALQD
HHHHCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
LDRAVVLGSRSFGKGLVQRSVDLTYGTQLKVTISRYYTPSGRCIQALDYAHKDKNGVAQK
HHHHEEECCCHHHHHHHHHCCCEEECCEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCC
TDAKNFNAFKTRKGRTVYDGGGVLPDIELEEAKMSPITSALLKNDGIFDYATSYYYKNPN
CCCCCCCHHHCCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHCCCCEEHHHHEEECCCC
LGEKIPVVTDADYSAFKQYLKANKISFDTETEVALKNTLAAAKNEKIDETIAPEYQQLLA
CCCCCCEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCHHHHHHHH
ALEKSENTLLDKNQKEIRGLIQEELIKRYQYQEGLYQLYIKNNSEIKRAVNVLNNQTEYK
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCHHHH
TILKM
HHHCC
>Mature Secondary Structure
MNRYFKKKFIIPAVAAGFLFIGTSFKEDFFEIAKQIEIFTTLFKAVNTNYVDETNPGDLM
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
DKAIKSMLGSLDPYTVYFNEQDVVNFKINNTGEYTGIGAMIARKKDRLIVREPYKNYPAD
HHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEECCCCCCCCC
KAGLKAGDEIIQIGDVLIADFKDDASQLLKGTKNTKISIKYLRQGKTYTTELVLDEVDIK
HHCCCCCHHHHHHHHEEEECCHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
SVPFYGKIDEKTGYIVLAHFSRKASAEVKDALEKLKADGATQIVLDLRGNPGGLLNEAID
CCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
ICNLFVPKNEVIVTTKSRIEKHNNTYKTTKEPIDTQIPLAILVNGRSASASEIVSGALQD
HHHHCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
LDRAVVLGSRSFGKGLVQRSVDLTYGTQLKVTISRYYTPSGRCIQALDYAHKDKNGVAQK
HHHHEEECCCHHHHHHHHHCCCEEECCEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCC
TDAKNFNAFKTRKGRTVYDGGGVLPDIELEEAKMSPITSALLKNDGIFDYATSYYYKNPN
CCCCCCCHHHCCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHCCCCEEHHHHEEECCCC
LGEKIPVVTDADYSAFKQYLKANKISFDTETEVALKNTLAAAKNEKIDETIAPEYQQLLA
CCCCCCEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCHHHHHHHH
ALEKSENTLLDKNQKEIRGLIQEELIKRYQYQEGLYQLYIKNNSEIKRAVNVLNNQTEYK
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCHHHH
TILKM
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]