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The map label for this gene is yddE [C]

Identifier: 146298617

GI number: 146298617

Start: 966140

End: 967042

Strand: Direct

Name: yddE [C]

Synonym: Fjoh_0855

Alternate gene names: 146298617

Gene position: 966140-967042 (Clockwise)

Preceding gene: 146298616

Following gene: 146298619

Centisome position: 15.85

GC content: 35.11

Gene sequence:

>903_bases
ATGGAGGGAAGAACAGCATTAGAATATTACGTTTTAGATGTGTTTTCAAACGAAAGTTACAAAGGAAACCCTCTTTCTGT
AGTTTTTACTGATGGAAATTTAAGATTAGAAACCTATAAGGATATCTCTAAAGAATTTGGCTATTCTGAAACCTCTTTTG
TCTATTATTCTACAAGAGAAAAAGCACTCGTAGTTCGTTCATTTACCCCAACGGGAATCGAAATCGACGGTGCAGGACAT
AATTTATTAGGCGCAGTCTGCGGTGCTTTGCTAAAAGGAATGCCCATTTTTGAGGAACAAAACGAAAGCGAGCCTTTTGT
AATCATGAAACATTCGGCAATACCTGTAACAGTAAGCTTTGATCCGGTTACTTTTTATCCTGTGGTTCAAATGCATCAAA
AATCGGCAGTCATTAAACAGGAAATTCCAACCTATAAAATTGCAGTAGCACTGGGCTTAAAAATTGAGGATTTAGATGTA
AGTGCTTTTGTTCCAACAGTAGTTAAAACAGAAGTAGCACACACAATGGTGCCTATAAAAAACAGCCAATTACTGAACAG
CTTTGTACCAGATAATCAACTTTTAATCGAAATATCTAAAGAATACAATTTTGAAGGATTTTATTGTTTCACAATTGCCG
ATGAAGGCCAGGAACATATCGTTGAAACAAGATTTTTTAATCCCATAATCGGAATAAATGAAGATCCTGCAACGGGAACC
GCAGCGGGTCCTTTAATTGGTTTTTTAACTCAAAAGAAATTCACCAAATCTGAAAAAGAATATAAAATTCTTCAAGGTGT
AAAATTAAAACAAGCCTCAATGATCGAAGTTATGAATCGGGAAGAGGATATTTTAGTAGGCGGTTCATCAATAATTACAA
TGAAAGGTGAACTTTACATCTAA

Upstream 100 bases:

>100_bases
GCGCTGAAGGAAAACGAATGTTGTAAAGGTTGTTGCTTTGATATTTTTTAAACTGTAACTTTATTCCGTCTAAACAAGCT
CAGCTATAAAAAAGGAAAAT

Downstream 100 bases:

>100_bases
ATAAAAAAAGCTGCATCCAGAAATGCAGCTTTTTTTATATCTAAACTTAGAAATAGAATTTCTTAGTTTGTTTTCATTGG
TGGTAAATCGAATGCAACAG

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MEGRTALEYYVLDVFSNESYKGNPLSVVFTDGNLRLETYKDISKEFGYSETSFVYYSTREKALVVRSFTPTGIEIDGAGH
NLLGAVCGALLKGMPIFEEQNESEPFVIMKHSAIPVTVSFDPVTFYPVVQMHQKSAVIKQEIPTYKIAVALGLKIEDLDV
SAFVPTVVKTEVAHTMVPIKNSQLLNSFVPDNQLLIEISKEYNFEGFYCFTIADEGQEHIVETRFFNPIIGINEDPATGT
AAGPLIGFLTQKKFTKSEKEYKILQGVKLKQASMIEVMNREEDILVGGSSIITMKGELYI

Sequences:

>Translated_300_residues
MEGRTALEYYVLDVFSNESYKGNPLSVVFTDGNLRLETYKDISKEFGYSETSFVYYSTREKALVVRSFTPTGIEIDGAGH
NLLGAVCGALLKGMPIFEEQNESEPFVIMKHSAIPVTVSFDPVTFYPVVQMHQKSAVIKQEIPTYKIAVALGLKIEDLDV
SAFVPTVVKTEVAHTMVPIKNSQLLNSFVPDNQLLIEISKEYNFEGFYCFTIADEGQEHIVETRFFNPIIGINEDPATGT
AAGPLIGFLTQKKFTKSEKEYKILQGVKLKQASMIEVMNREEDILVGGSSIITMKGELYI
>Mature_300_residues
MEGRTALEYYVLDVFSNESYKGNPLSVVFTDGNLRLETYKDISKEFGYSETSFVYYSTREKALVVRSFTPTGIEIDGAGH
NLLGAVCGALLKGMPIFEEQNESEPFVIMKHSAIPVTVSFDPVTFYPVVQMHQKSAVIKQEIPTYKIAVALGLKIEDLDV
SAFVPTVVKTEVAHTMVPIKNSQLLNSFVPDNQLLIEISKEYNFEGFYCFTIADEGQEHIVETRFFNPIIGINEDPATGT
AAGPLIGFLTQKKFTKSEKEYKILQGVKLKQASMIEVMNREEDILVGGSSIITMKGELYI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=310, Percent_Identity=27.741935483871, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 33458; Mature: 33458

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGRTALEYYVLDVFSNESYKGNPLSVVFTDGNLRLETYKDISKEFGYSETSFVYYSTRE
CCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCEEEEHHHHHHHHCCCCCCEEEEEECCC
KALVVRSFTPTGIEIDGAGHNLLGAVCGALLKGMPIFEEQNESEPFVIMKHSAIPVTVSF
EEEEEEECCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEEE
DPVTFYPVVQMHQKSAVIKQEIPTYKIAVALGLKIEDLDVSAFVPTVVKTEVAHTMVPIK
CCEEEEHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCHHHCCHHHHHHHHHEEECCC
NSQLLNSFVPDNQLLIEISKEYNFEGFYCFTIADEGQEHIVETRFFNPIIGINEDPATGT
CHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCC
AAGPLIGFLTQKKFTKSEKEYKILQGVKLKQASMIEVMNREEDILVGGSSIITMKGELYI
CCCHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCEEEEEECEEEC
>Mature Secondary Structure
MEGRTALEYYVLDVFSNESYKGNPLSVVFTDGNLRLETYKDISKEFGYSETSFVYYSTRE
CCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCEEEEHHHHHHHHCCCCCCEEEEEECCC
KALVVRSFTPTGIEIDGAGHNLLGAVCGALLKGMPIFEEQNESEPFVIMKHSAIPVTVSF
EEEEEEECCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEEE
DPVTFYPVVQMHQKSAVIKQEIPTYKIAVALGLKIEDLDVSAFVPTVVKTEVAHTMVPIK
CCEEEEHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCHHHCCHHHHHHHHHEEECCC
NSQLLNSFVPDNQLLIEISKEYNFEGFYCFTIADEGQEHIVETRFFNPIIGINEDPATGT
CHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCC
AAGPLIGFLTQKKFTKSEKEYKILQGVKLKQASMIEVMNREEDILVGGSSIITMKGELYI
CCCHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCEEEEEECEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]