| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146298449
Identifier: 146298449
GI number: 146298449
Start: 751793
End: 752206
Strand: Direct
Name: 146298449
Synonym: Fjoh_0686
Alternate gene names: NA
Gene position: 751793-752206 (Clockwise)
Preceding gene: 146298443
Following gene: 146298451
Centisome position: 12.33
GC content: 30.43
Gene sequence:
>414_bases ATGAGCACAGTAAAACCAAAACATATCGGCAGAAACATTAGCCGAATTAGAGAACTGAGAGATATGAAGCAGGAAGCACT TGCTATTGCAATTGGTACAAACCAACAATCTATCTCTATTATTGAAGGAAGCGAAAGTGTTGATGAAGAGAAACTAAAGA AAATTGCGGAAGCTTTGGGAGTTTCAGCAGAAACTATTAAAAATTTTTCTGAAGATGCTGTTTTTAATATTATTGGAAAT ACTATTGAAATAGAAAATAATACTGGTTCTTCAGTAATAAGTTATGGATGCACTTTTAATCCTTTAGATAAACTTATTGA ATCTATTGAAAAGAATGAAAAACTTTATGAAAGATTAATTCAAATAGAAAGAGAGAAAGCTGCTTATTTGGAGAAGTTAC TTGATAAGAAATAG
Upstream 100 bases:
>100_bases ATTTTTACCCGCGAAAAGATTTACAATTTGTATCTCACAAGAACGAACTTGTTTTCTACTGAAACCAAAAATGTAACCAA TTTTTAAATATCTTTGAACT
Downstream 100 bases:
>100_bases AAATTTATTTTTATAAAAATAAAAAACCGAAGTTTTGAAATTTCAAAAGCTTCGGTTTTTTTATTCTTTAATTTTTATGC GTGTTATTTTACACCTTCTA
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: XRE Family Plasmid Maintenance System Antidote Protein; Helix-TurN-Helix Domain Protein; HTH_3 Family Transcriptional Regulator Protein; Helix-Turn-Helix Domain Protein
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MSTVKPKHIGRNISRIRELRDMKQEALAIAIGTNQQSISIIEGSESVDEEKLKKIAEALGVSAETIKNFSEDAVFNIIGN TIEIENNTGSSVISYGCTFNPLDKLIESIEKNEKLYERLIQIEREKAAYLEKLLDKK
Sequences:
>Translated_137_residues MSTVKPKHIGRNISRIRELRDMKQEALAIAIGTNQQSISIIEGSESVDEEKLKKIAEALGVSAETIKNFSEDAVFNIIGN TIEIENNTGSSVISYGCTFNPLDKLIESIEKNEKLYERLIQIEREKAAYLEKLLDKK >Mature_136_residues STVKPKHIGRNISRIRELRDMKQEALAIAIGTNQQSISIIEGSESVDEEKLKKIAEALGVSAETIKNFSEDAVFNIIGNT IEIENNTGSSVISYGCTFNPLDKLIESIEKNEKLYERLIQIEREKAAYLEKLLDKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15398; Mature: 15267
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVKPKHIGRNISRIRELRDMKQEALAIAIGTNQQSISIIEGSESVDEEKLKKIAEALG CCCCCHHHHCCHHHHHHHHHHHHHHHEEHEECCCCCEEEEECCCCCCCHHHHHHHHHHHC VSAETIKNFSEDAVFNIIGNTIEIENNTGSSVISYGCTFNPLDKLIESIEKNEKLYERLI CCHHHHHCCCHHHHHHHHCCEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH QIEREKAAYLEKLLDKK HHHHHHHHHHHHHHCCC >Mature Secondary Structure STVKPKHIGRNISRIRELRDMKQEALAIAIGTNQQSISIIEGSESVDEEKLKKIAEALG CCCCHHHHCCHHHHHHHHHHHHHHHEEHEECCCCCEEEEECCCCCCCHHHHHHHHHHHC VSAETIKNFSEDAVFNIIGNTIEIENNTGSSVISYGCTFNPLDKLIESIEKNEKLYERLI CCHHHHHCCCHHHHHHHHCCEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH QIEREKAAYLEKLLDKK HHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA