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The map label for this gene is ltrA [H]

Identifier: 146284334

GI number: 146284334

Start: 4362280

End: 4363194

Strand: Direct

Name: ltrA [H]

Synonym: PST_4022

Alternate gene names: 146284334

Gene position: 4362280-4363194 (Clockwise)

Preceding gene: 146284332

Following gene: 146284340

Centisome position: 95.51

GC content: 69.18

Gene sequence:

>915_bases
ATGGGAACGAATGACAGCGCAGCCCTGCTGCCCTACATGGCCGTGTTCGTGCGGGTGGTCGAGGCCGGCAGCTTCTCCGG
CGCCGCGCGCCTGCTGGGCAGTACACCGTCGGCGGTGAGCCGCCAGGTGGCACGGCTGGAGCAGGCCCTGGCGCTGCGCC
TACTGGAACGCACCACACGCCAGCTGCGGCTGAACGAGGCCGGGGCGGAGTTCTACCAGCATTGCCGGGACATGCTCGAT
GCGGCCGACGCCGCCGTCGCCATCGGCGAGCGGCTGATGCGCAGCCCGCGCGGGCTGGTGCGCCTGAGCGTGCCGAAGGC
CTATGGCAAGTTCGTCGTCGGACCGGCGATGCCGGCTTTTCTCCAGCGCTACCCCGAGGTCGATGTGCAGCTGCGGATCA
GCGACCAGAGCCCGGACCTGATCGAGGACGGTTTCGACCTACTGGTGCAGGTCACCGACAACCCACCCGAAGGCCTGGCC
GGCAAGCCGCTCGGGCCGGTGCGCCAACTGCTCTGCGCCAGCCCCGACTACCTGCAGCGCCACGGCGAGCCGCAACATCC
GCAGGACCTGCTGCGCCACAGCTGCCTGTATCTGGGGGAAACGGCGGGAGACAATCGCTGGCACCTGCGCCGCGGCGAGC
AACAGGAAACGGTGACGGTGCGCGGTCGCTACATCAGCAACCACAGCGAGGCCCGGTTACTGGTGGCGCTGGCAGGCCTG
GGCATCACCTGCCTGCCGCATTTCACCGCTGCCCAGGCGCTGGCCGACGGGCAGCTGCGCGAAGTGCTGCCGCAGTGGCG
CTACACCGGCTCCTACCAGGGCGCGGCCTGGCTGCTATGGCGACAGAATCACCACCTGCCGCCGAAGACACGGGCGCTGA
TCGACTATCTGAGCGAGGCGCTGATAGCCAGCTGA

Upstream 100 bases:

>100_bases
CGTGCCTTTCATGTTCGAATCCCCGCACCAATCAGGCGCTGATTGTCGGGCCTGTCGCGGCAGTCGATAATCCAGCGAAA
CAGCACAGGACCTGTTCCGC

Downstream 100 bases:

>100_bases
GCGCAACGCGCATCCGCAGACAGTGGGCTGGCGCCCACCGCTACCGGCGCGCCTGTCAGCGCTCCTTGGTGCCTTCCACT
TCCTCGGCCATGCGTGCCAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MGTNDSAALLPYMAVFVRVVEAGSFSGAARLLGSTPSAVSRQVARLEQALALRLLERTTRQLRLNEAGAEFYQHCRDMLD
AADAAVAIGERLMRSPRGLVRLSVPKAYGKFVVGPAMPAFLQRYPEVDVQLRISDQSPDLIEDGFDLLVQVTDNPPEGLA
GKPLGPVRQLLCASPDYLQRHGEPQHPQDLLRHSCLYLGETAGDNRWHLRRGEQQETVTVRGRYISNHSEARLLVALAGL
GITCLPHFTAAQALADGQLREVLPQWRYTGSYQGAAWLLWRQNHHLPPKTRALIDYLSEALIAS

Sequences:

>Translated_304_residues
MGTNDSAALLPYMAVFVRVVEAGSFSGAARLLGSTPSAVSRQVARLEQALALRLLERTTRQLRLNEAGAEFYQHCRDMLD
AADAAVAIGERLMRSPRGLVRLSVPKAYGKFVVGPAMPAFLQRYPEVDVQLRISDQSPDLIEDGFDLLVQVTDNPPEGLA
GKPLGPVRQLLCASPDYLQRHGEPQHPQDLLRHSCLYLGETAGDNRWHLRRGEQQETVTVRGRYISNHSEARLLVALAGL
GITCLPHFTAAQALADGQLREVLPQWRYTGSYQGAAWLLWRQNHHLPPKTRALIDYLSEALIAS
>Mature_303_residues
GTNDSAALLPYMAVFVRVVEAGSFSGAARLLGSTPSAVSRQVARLEQALALRLLERTTRQLRLNEAGAEFYQHCRDMLDA
ADAAVAIGERLMRSPRGLVRLSVPKAYGKFVVGPAMPAFLQRYPEVDVQLRISDQSPDLIEDGFDLLVQVTDNPPEGLAG
KPLGPVRQLLCASPDYLQRHGEPQHPQDLLRHSCLYLGETAGDNRWHLRRGEQQETVTVRGRYISNHSEARLLVALAGLG
ITCLPHFTAAQALADGQLREVLPQWRYTGSYQGAAWLLWRQNHHLPPKTRALIDYLSEALIAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=31.1864406779661, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=34.4947735191638, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI145693193, Length=267, Percent_Identity=34.0823970037453, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=30.952380952381, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=29.6296296296296, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=28.3276450511945, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1787589, Length=257, Percent_Identity=32.295719844358, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790011, Length=257, Percent_Identity=23.7354085603113, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788706, Length=203, Percent_Identity=25.615763546798, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=132, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693105, Length=243, Percent_Identity=25.1028806584362, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789173, Length=248, Percent_Identity=26.2096774193548, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787879, Length=311, Percent_Identity=27.9742765273312, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789204, Length=267, Percent_Identity=26.2172284644195, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33618; Mature: 33487

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTNDSAALLPYMAVFVRVVEAGSFSGAARLLGSTPSAVSRQVARLEQALALRLLERTTR
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QLRLNEAGAEFYQHCRDMLDAADAAVAIGERLMRSPRGLVRLSVPKAYGKFVVGPAMPAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCEEECCCCHHH
LQRYPEVDVQLRISDQSPDLIEDGFDLLVQVTDNPPEGLAGKPLGPVRQLLCASPDYLQR
HHHCCCCCEEEEECCCCCCHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHH
HGEPQHPQDLLRHSCLYLGETAGDNRWHLRRGEQQETVTVRGRYISNHSEARLLVALAGL
CCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEEEEEEECCCCHHHHHHHHHCC
GITCLPHFTAAQALADGQLREVLPQWRYTGSYQGAAWLLWRQNHHLPPKTRALIDYLSEA
CHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
LIAS
HHCC
>Mature Secondary Structure 
GTNDSAALLPYMAVFVRVVEAGSFSGAARLLGSTPSAVSRQVARLEQALALRLLERTTR
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QLRLNEAGAEFYQHCRDMLDAADAAVAIGERLMRSPRGLVRLSVPKAYGKFVVGPAMPAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCEEECCCCHHH
LQRYPEVDVQLRISDQSPDLIEDGFDLLVQVTDNPPEGLAGKPLGPVRQLLCASPDYLQR
HHHCCCCCEEEEECCCCCCHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHH
HGEPQHPQDLLRHSCLYLGETAGDNRWHLRRGEQQETVTVRGRYISNHSEARLLVALAGL
CCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEEEEEEECCCCHHHHHHHHHCC
GITCLPHFTAAQALADGQLREVLPQWRYTGSYQGAAWLLWRQNHHLPPKTRALIDYLSEA
CHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
LIAS
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]