| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is yccS [H]
Identifier: 146284218
GI number: 146284218
Start: 4236258
End: 4238516
Strand: Direct
Name: yccS [H]
Synonym: PST_3906
Alternate gene names: 146284218
Gene position: 4236258-4238516 (Clockwise)
Preceding gene: 146284217
Following gene: 146284220
Centisome position: 92.75
GC content: 67.51
Gene sequence:
>2259_bases TTGAGCCCCGGCCGCGGCCGTGACAGCGTATGCACTGGCGCTGCCCTATCTGCCCGTCCCCAACCGGATCGCTCCATGCC GCAACCCTCGCTCAGCCAGTACTTACGCCGCCTCTGGGCGCTGGAGAAGTTCGGCTACAGCCTGCGCGTGCTGATCGCCA TGGCCGGCAGCATGGGCCTGGCCTGGTACCTCGGGCAGCCATCGCTGATCATTCCGCTGTTCCTCGGCATCATCGCCAGC GCCCTGGCGGAGACCGACGACAGCTGGCTGGGCCGGCTCAGCGCCCTGCTGGTGACCCTACTGTGCTTCAGCATCGCCGC GGTAGCCGTCGAGTTGCTGTTTCCCTATCCGTGGCTGTTCGTTGCCGGCCTGGCGTTGTCCACCTTCGCCCTGGTCATGC TCGGCGCGCTCGGCGAACGCTACGGCGCGATCGCCCAGGCCACGCTGATCCTCGCCATCTACAGCATGATCGCCGCCGAC CAGCGCAACGGCGAGCTGCAGCAGTTCTGGCGCGACCCACTGCTGCTGGTGACCGGCGCCGCCTGGTATGGCCTGCTGTC GGTATGCTGGAACGCGCTGTTCGCGCACCAGCCGGTGCAGCAGAGCCTGGCGCGGTTGTATCGCGAGCTGGGCCTGTACT TCCGCTACAAGGCAGCGCTGTTCGAACCGGTGCGCCAGCTGGACGTCGAACAGCGCCGGCTCGAGCTGGCGCAGCAGAAC GGCCGGGTGGTCAGCGCCCTGAATGCGGCCAAGGAAACCCTGCTGCACCGCCTGGGCAGCGGCCGCCCCGGCAGCAAGAT CAATCACTACCTGAAGCTTTACTTCCTCGCCCAGGACCTGCACGAGCGTGTCAGCTCTTCGCACTACCCTTACCAGGCCC TCGCCGAAGCCTTCTTCCACAGCGACGTGCTGTTTCGCTGCCAGCGCCTGCTGCGCCTGCAGGCCAGCGCCTGCGCCGAA CTCGGCGAGGCCATTCAGCTGCGCCAGACGTTTCGCTACAGCGATGCCAATGCCCAGGCACTGGAGGACCTGCAGGCGTC GCTGGAGCACCTGCGCGAGCAGAACAACCCGGCCTGGCGCGGCCTGCTGCGCTCGCTGCGGGCGCTGTCGAGCAACCTCT CCACCCTGCAGCGCCAGCTCGCCAGTGCCAGCGATCCCGCCGCGCTGGAAGGCACGCAGGACAGCAGCCTGCTGGATCGC CAGCCGCAGACGCTGCGCGAGGCGTTCAACCGCATCCGCCTGCAGCTGACGCCGACGTCCCTGCTGTTCCGCCACGCCTT GCGCATGGCCATCGCCCTGGTCGCGGGTTACGCCGCGCTGCACGCCATCCACCCCGAGCAGGGCTACTGGGTGCTGCTGA CCACCGTATTCGTCTGCCAACCCAACTATGGCGCCACCCGGATCAAGCTGGTGCAGCGGATCAGCGGCACCGTGCTCGGC CTGGTGGTCGGCTGGGCGCTGTTCGATCTGTTCCCCAGCCAGCCGGTGCAGGCACTGTTCGCCGTGGTCGCCGGAGTGGT GTTCTTCGCCACCCGCAGCACGCGCTACACCCTGGCCACGGCCGCGATCACGCTGATGGTGCTGTTCTGCTTCAACCAGG TCGGCGATGGCTACGGGCTGATCTGGCCGCGCCTGTTCGATACCCTGCTCGGCAGCCTGATCGCCGCCGCCGCGGTGTTC CTGATCCTGCCGGATTGGCAGGGCCGGCGTCTGAACCAGGTGGTCGCCAACACCCTCAGCTGCAACAGCGACTACCTGCG CCAGATCATGCGCCAGTACGACAGTGGCAAGCACGACGACCTGGCCTACCGCCTGGCCCGGCGCAACGCCCACAACGCCG ATGCCGCGCTGTCGACCACCCTCTCGAACATGCTTCTGGAGCCCGGCCACTTCCGCAAGGATGCCGAGACCGGCTTTCGC TTTCTGATCCTCTCGCACACCCTGCTGAACTACCTGTCCGGCCTCGGCGCCCATCGCGAAAGCCTGCCTGACGATGCCAG CGATGCGCTGCTCGAGCGCGCCGCGGAGCAGCTGGCGGCGAGCCTCGACGATCTGGCCACGGCGCTGGCACAGAACAAGC CGGTGGCCATCTACAGCGAAGAGGAAGAAGCGCTGGCGCAGCAGCTCGAACAGATTCCGGAGGAGATGGACGATGCCCAT CGCCTGGTGCAGACCCAGCTCGGGTTGATCTGCCGTCAGCTGGCACCGCTGCGCAGCATGGCCGCGCACCTGATCAAGCA GCAGCCGGTCCAGCGCTAG
Upstream 100 bases:
>100_bases AGGTAAGATCAAGGGCCGCTCGCTGAAGGTCCGCGTGCTGCGCTGAAGCCAGCCGCCGCCAAGCCGATAGCAAGCAGGCC AGCATCAGGCGGCCGGAGGG
Downstream 100 bases:
>100_bases TACTGGGGCAACGCGTCCGGGGCGGGCATGGCGTGGCGGCGAAAGATCGCCGCGTAGCTGCCGTCCTCGAGCATCGCGGC GATCTCGCGCTCGAAGGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 752; Mature: 751
Protein sequence:
>752_residues MSPGRGRDSVCTGAALSARPQPDRSMPQPSLSQYLRRLWALEKFGYSLRVLIAMAGSMGLAWYLGQPSLIIPLFLGIIAS ALAETDDSWLGRLSALLVTLLCFSIAAVAVELLFPYPWLFVAGLALSTFALVMLGALGERYGAIAQATLILAIYSMIAAD QRNGELQQFWRDPLLLVTGAAWYGLLSVCWNALFAHQPVQQSLARLYRELGLYFRYKAALFEPVRQLDVEQRRLELAQQN GRVVSALNAAKETLLHRLGSGRPGSKINHYLKLYFLAQDLHERVSSSHYPYQALAEAFFHSDVLFRCQRLLRLQASACAE LGEAIQLRQTFRYSDANAQALEDLQASLEHLREQNNPAWRGLLRSLRALSSNLSTLQRQLASASDPAALEGTQDSSLLDR QPQTLREAFNRIRLQLTPTSLLFRHALRMAIALVAGYAALHAIHPEQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLG LVVGWALFDLFPSQPVQALFAVVAGVVFFATRSTRYTLATAAITLMVLFCFNQVGDGYGLIWPRLFDTLLGSLIAAAAVF LILPDWQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKHDDLAYRLARRNAHNADAALSTTLSNMLLEPGHFRKDAETGFR FLILSHTLLNYLSGLGAHRESLPDDASDALLERAAEQLAASLDDLATALAQNKPVAIYSEEEEALAQQLEQIPEEMDDAH RLVQTQLGLICRQLAPLRSMAAHLIKQQPVQR
Sequences:
>Translated_752_residues MSPGRGRDSVCTGAALSARPQPDRSMPQPSLSQYLRRLWALEKFGYSLRVLIAMAGSMGLAWYLGQPSLIIPLFLGIIAS ALAETDDSWLGRLSALLVTLLCFSIAAVAVELLFPYPWLFVAGLALSTFALVMLGALGERYGAIAQATLILAIYSMIAAD QRNGELQQFWRDPLLLVTGAAWYGLLSVCWNALFAHQPVQQSLARLYRELGLYFRYKAALFEPVRQLDVEQRRLELAQQN GRVVSALNAAKETLLHRLGSGRPGSKINHYLKLYFLAQDLHERVSSSHYPYQALAEAFFHSDVLFRCQRLLRLQASACAE LGEAIQLRQTFRYSDANAQALEDLQASLEHLREQNNPAWRGLLRSLRALSSNLSTLQRQLASASDPAALEGTQDSSLLDR QPQTLREAFNRIRLQLTPTSLLFRHALRMAIALVAGYAALHAIHPEQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLG LVVGWALFDLFPSQPVQALFAVVAGVVFFATRSTRYTLATAAITLMVLFCFNQVGDGYGLIWPRLFDTLLGSLIAAAAVF LILPDWQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKHDDLAYRLARRNAHNADAALSTTLSNMLLEPGHFRKDAETGFR FLILSHTLLNYLSGLGAHRESLPDDASDALLERAAEQLAASLDDLATALAQNKPVAIYSEEEEALAQQLEQIPEEMDDAH RLVQTQLGLICRQLAPLRSMAAHLIKQQPVQR >Mature_751_residues SPGRGRDSVCTGAALSARPQPDRSMPQPSLSQYLRRLWALEKFGYSLRVLIAMAGSMGLAWYLGQPSLIIPLFLGIIASA LAETDDSWLGRLSALLVTLLCFSIAAVAVELLFPYPWLFVAGLALSTFALVMLGALGERYGAIAQATLILAIYSMIAADQ RNGELQQFWRDPLLLVTGAAWYGLLSVCWNALFAHQPVQQSLARLYRELGLYFRYKAALFEPVRQLDVEQRRLELAQQNG RVVSALNAAKETLLHRLGSGRPGSKINHYLKLYFLAQDLHERVSSSHYPYQALAEAFFHSDVLFRCQRLLRLQASACAEL GEAIQLRQTFRYSDANAQALEDLQASLEHLREQNNPAWRGLLRSLRALSSNLSTLQRQLASASDPAALEGTQDSSLLDRQ PQTLREAFNRIRLQLTPTSLLFRHALRMAIALVAGYAALHAIHPEQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLGL VVGWALFDLFPSQPVQALFAVVAGVVFFATRSTRYTLATAAITLMVLFCFNQVGDGYGLIWPRLFDTLLGSLIAAAAVFL ILPDWQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKHDDLAYRLARRNAHNADAALSTTLSNMLLEPGHFRKDAETGFRF LILSHTLLNYLSGLGAHRESLPDDASDALLERAAEQLAASLDDLATALAQNKPVAIYSEEEEALAQQLEQIPEEMDDAHR LVQTQLGLICRQLAPLRSMAAHLIKQQPVQR
Specific function: Unknown
COG id: COG1289
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yccS/yhfK family [H]
Homologues:
Organism=Escherichia coli, GI87081808, Length=704, Percent_Identity=40.9090909090909, Blast_Score=489, Evalue=1e-139, Organism=Escherichia coli, GI87082248, Length=554, Percent_Identity=25.2707581227437, Blast_Score=110, Evalue=3e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010019 - InterPro: IPR010020 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83511; Mature: 83380
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPGRGRDSVCTGAALSARPQPDRSMPQPSLSQYLRRLWALEKFGYSLRVLIAMAGSMGL CCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCE AWYLGQPSLIIPLFLGIIASALAETDDSWLGRLSALLVTLLCFSIAAVAVELLFPYPWLF EEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH VAGLALSTFALVMLGALGERYGAIAQATLILAIYSMIAADQRNGELQQFWRDPLLLVTGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHH AWYGLLSVCWNALFAHQPVQQSLARLYRELGLYFRYKAALFEPVRQLDVEQRRLELAQQN HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GRVVSALNAAKETLLHRLGSGRPGSKINHYLKLYFLAQDLHERVSSSHYPYQALAEAFFH CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH SDVLFRCQRLLRLQASACAELGEAIQLRQTFRYSDANAQALEDLQASLEHLREQNNPAWR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH GLLRSLRALSSNLSTLQRQLASASDPAALEGTQDSSLLDRQPQTLREAFNRIRLQLTPTS HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHEEEECHHH LLFRHALRMAIALVAGYAALHAIHPEQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LVVGWALFDLFPSQPVQALFAVVAGVVFFATRSTRYTLATAAITLMVLFCFNQVGDGYGL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC IWPRLFDTLLGSLIAAAAVFLILPDWQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKHDD HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH LAYRLARRNAHNADAALSTTLSNMLLEPGHFRKDAETGFRFLILSHTLLNYLSGLGAHRE HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH SLPDDASDALLERAAEQLAASLDDLATALAQNKPVAIYSEEEEALAQQLEQIPEEMDDAH CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHH RLVQTQLGLICRQLAPLRSMAAHLIKQQPVQR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SPGRGRDSVCTGAALSARPQPDRSMPQPSLSQYLRRLWALEKFGYSLRVLIAMAGSMGL CCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCE AWYLGQPSLIIPLFLGIIASALAETDDSWLGRLSALLVTLLCFSIAAVAVELLFPYPWLF EEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH VAGLALSTFALVMLGALGERYGAIAQATLILAIYSMIAADQRNGELQQFWRDPLLLVTGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHH AWYGLLSVCWNALFAHQPVQQSLARLYRELGLYFRYKAALFEPVRQLDVEQRRLELAQQN HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GRVVSALNAAKETLLHRLGSGRPGSKINHYLKLYFLAQDLHERVSSSHYPYQALAEAFFH CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH SDVLFRCQRLLRLQASACAELGEAIQLRQTFRYSDANAQALEDLQASLEHLREQNNPAWR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH GLLRSLRALSSNLSTLQRQLASASDPAALEGTQDSSLLDRQPQTLREAFNRIRLQLTPTS HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHEEEECHHH LLFRHALRMAIALVAGYAALHAIHPEQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LVVGWALFDLFPSQPVQALFAVVAGVVFFATRSTRYTLATAAITLMVLFCFNQVGDGYGL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC IWPRLFDTLLGSLIAAAAVFLILPDWQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKHDD HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH LAYRLARRNAHNADAALSTTLSNMLLEPGHFRKDAETGFRFLILSHTLLNYLSGLGAHRE HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH SLPDDASDALLERAAEQLAASLDDLATALAQNKPVAIYSEEEEALAQQLEQIPEEMDDAH CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHH RLVQTQLGLICRQLAPLRSMAAHLIKQQPVQR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]