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The map label for this gene is ybbK [C]

Identifier: 146284203

GI number: 146284203

Start: 4219060

End: 4219818

Strand: Direct

Name: ybbK [C]

Synonym: PST_3891

Alternate gene names: 146284203

Gene position: 4219060-4219818 (Clockwise)

Preceding gene: 146284202

Following gene: 146284204

Centisome position: 92.37

GC content: 61.92

Gene sequence:

>759_bases
ATGGGTTATGAAATGAGTTTTCTGGTGCTGCTGGTGCTGGTCGTGGGGCTGCTCGCCTCGGCGTTCCGCATCCTGCGTGA
GTACGAGCGCGGCGTGGTGTTCATGCTCGGGCGCTTCTGGAAGGTCAAGGGACCCGGCCTGATCATGATCATCCCCGGGC
TGCAGCAGATGGTGCGGGTCGACCTGCGCACCCTGGTGCTGGACGTGCCGACTCAGGATGTGATCTCCCGTGACAACGTC
TCGGTGAAGGTCAACGCAGTGGTGTACTACCGCGTGCTGGACGCGCAGAAGGCGATCATCCAGGTCGAGGACTATCACTC
GGCCACCAGCCAGCTGGCGCAGACCACACTGCGCGCAGTGCTCGGCAAGCACGAACTGGACGACATGCTGGCCGAGCGCG
AGCAGCTCAACAATGACATCCAGCAGGTGCTCGATGCACAGACCGACGCCTGGGGGATCAAGGTGTCCAATGTCGAGATC
AAGCACGTCGACCTCGACGAATCCATGGTCCGCGCCATCGCTCGCCAGGCCGAAGCGGAACGCGAGCGGCGCGCCAAGGT
CATTCATGCAGAGGGCGAGCTGCAGGCTTCCGAGAAGCTGATGCAGGCCGCCGAAATGCTCGGCCGGCAATCGGGCGCCA
TGCAGCTGCGCTACATGCAGACGTTGAGCAACATCGCCGGTGACAAGAGCTCGACCATCGTTTTTCCGTTGCCCATCGAA
CTGCTGCAGGGCATCAAGAACCTCGACAGGAAATCCTGA

Upstream 100 bases:

>100_bases
ACCCCGTTGCAGGTCGGCCAGCAGGTACGGGTGGTCGCCCGGGAGGGTCTGCAATTGAACGTCGCGGCACAGCCATCAAG
CAATCGAGAGGAGCTGAACC

Downstream 100 bases:

>100_bases
GTGCATCCATCCGCCACGCTCCACCTGCCATGGCAGCCGCTGCGTCTGCTGCTGATCGCCCTGCTCGCCCTAACCCTGGG
CGCCTGCGCGGCACTGTCAC

Product: stomatin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MGYEMSFLVLLVLVVGLLASAFRILREYERGVVFMLGRFWKVKGPGLIMIIPGLQQMVRVDLRTLVLDVPTQDVISRDNV
SVKVNAVVYYRVLDAQKAIIQVEDYHSATSQLAQTTLRAVLGKHELDDMLAEREQLNNDIQQVLDAQTDAWGIKVSNVEI
KHVDLDESMVRAIARQAEAERERRAKVIHAEGELQASEKLMQAAEMLGRQSGAMQLRYMQTLSNIAGDKSSTIVFPLPIE
LLQGIKNLDRKS

Sequences:

>Translated_252_residues
MGYEMSFLVLLVLVVGLLASAFRILREYERGVVFMLGRFWKVKGPGLIMIIPGLQQMVRVDLRTLVLDVPTQDVISRDNV
SVKVNAVVYYRVLDAQKAIIQVEDYHSATSQLAQTTLRAVLGKHELDDMLAEREQLNNDIQQVLDAQTDAWGIKVSNVEI
KHVDLDESMVRAIARQAEAERERRAKVIHAEGELQASEKLMQAAEMLGRQSGAMQLRYMQTLSNIAGDKSSTIVFPLPIE
LLQGIKNLDRKS
>Mature_251_residues
GYEMSFLVLLVLVVGLLASAFRILREYERGVVFMLGRFWKVKGPGLIMIIPGLQQMVRVDLRTLVLDVPTQDVISRDNVS
VKVNAVVYYRVLDAQKAIIQVEDYHSATSQLAQTTLRAVLGKHELDDMLAEREQLNNDIQQVLDAQTDAWGIKVSNVEIK
HVDLDESMVRAIARQAEAERERRAKVIHAEGELQASEKLMQAAEMLGRQSGAMQLRYMQTLSNIAGDKSSTIVFPLPIEL
LQGIKNLDRKS

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI21686995, Length=245, Percent_Identity=47.7551020408163, Blast_Score=220, Evalue=1e-57,
Organism=Homo sapiens, GI221316744, Length=245, Percent_Identity=47.7551020408163, Blast_Score=219, Evalue=1e-57,
Organism=Homo sapiens, GI38016911, Length=243, Percent_Identity=47.7366255144033, Blast_Score=214, Evalue=8e-56,
Organism=Homo sapiens, GI7657615, Length=254, Percent_Identity=34.6456692913386, Blast_Score=153, Evalue=2e-37,
Organism=Homo sapiens, GI7305503, Length=165, Percent_Identity=40, Blast_Score=124, Evalue=9e-29,
Organism=Homo sapiens, GI20149563, Length=159, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI38016907, Length=60, Percent_Identity=58.3333333333333, Blast_Score=75, Evalue=5e-14,
Organism=Escherichia coli, GI1786697, Length=192, Percent_Identity=34.8958333333333, Blast_Score=130, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI193209764, Length=249, Percent_Identity=45.3815261044177, Blast_Score=218, Evalue=2e-57,
Organism=Caenorhabditis elegans, GI17569493, Length=249, Percent_Identity=45.3815261044177, Blast_Score=218, Evalue=2e-57,
Organism=Caenorhabditis elegans, GI25153583, Length=250, Percent_Identity=45.2, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI71987621, Length=250, Percent_Identity=45.2, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI71987612, Length=250, Percent_Identity=45.2, Blast_Score=202, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17569497, Length=238, Percent_Identity=41.5966386554622, Blast_Score=198, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17569499, Length=247, Percent_Identity=43.7246963562753, Blast_Score=197, Evalue=5e-51,
Organism=Caenorhabditis elegans, GI17570459, Length=246, Percent_Identity=41.4634146341463, Blast_Score=189, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI193210507, Length=255, Percent_Identity=40.7843137254902, Blast_Score=183, Evalue=9e-47,
Organism=Caenorhabditis elegans, GI71989948, Length=235, Percent_Identity=44.2553191489362, Blast_Score=183, Evalue=9e-47,
Organism=Caenorhabditis elegans, GI17570161, Length=255, Percent_Identity=40.7843137254902, Blast_Score=182, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI32566490, Length=211, Percent_Identity=45.4976303317536, Blast_Score=174, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=46.1111111111111, Blast_Score=144, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI32564147, Length=168, Percent_Identity=36.3095238095238, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71989963, Length=122, Percent_Identity=45.0819672131148, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17542664, Length=165, Percent_Identity=26.0606060606061, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321571, Length=254, Percent_Identity=25.5905511811024, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45556022, Length=234, Percent_Identity=49.5726495726496, Blast_Score=217, Evalue=6e-57,
Organism=Drosophila melanogaster, GI24657857, Length=237, Percent_Identity=50.6329113924051, Blast_Score=212, Evalue=2e-55,
Organism=Drosophila melanogaster, GI62484448, Length=237, Percent_Identity=50.6329113924051, Blast_Score=211, Evalue=4e-55,
Organism=Drosophila melanogaster, GI62484274, Length=237, Percent_Identity=50.6329113924051, Blast_Score=211, Evalue=4e-55,
Organism=Drosophila melanogaster, GI281365664, Length=237, Percent_Identity=50.6329113924051, Blast_Score=211, Evalue=5e-55,
Organism=Drosophila melanogaster, GI18860517, Length=239, Percent_Identity=46.8619246861925, Blast_Score=208, Evalue=2e-54,
Organism=Drosophila melanogaster, GI281361631, Length=238, Percent_Identity=39.9159663865546, Blast_Score=190, Evalue=6e-49,
Organism=Drosophila melanogaster, GI281361633, Length=238, Percent_Identity=39.9159663865546, Blast_Score=190, Evalue=7e-49,
Organism=Drosophila melanogaster, GI21356845, Length=238, Percent_Identity=37.3949579831933, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI28573263, Length=245, Percent_Identity=37.5510204081633, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI281361635, Length=182, Percent_Identity=41.2087912087912, Blast_Score=151, Evalue=4e-37,
Organism=Drosophila melanogaster, GI45550506, Length=165, Percent_Identity=38.7878787878788, Blast_Score=120, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28344; Mature: 28213

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYEMSFLVLLVLVVGLLASAFRILREYERGVVFMLGRFWKVKGPGLIMIIPGLQQMVRV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHEEECCCCEEEECCCHHHHHHH
DLRTLVLDVPTQDVISRDNVSVKVNAVVYYRVLDAQKAIIQVEDYHSATSQLAQTTLRAV
HHHHHHEECCCHHHHCCCCCEEEEEEEEEEEEHHHHHHHEEHHHHHHHHHHHHHHHHHHH
LGKHELDDMLAEREQLNNDIQQVLDAQTDAWGIKVSNVEIKHVDLDESMVRAIARQAEAE
HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEEEECCCHHHHHHHHHHHHHH
RERRAKVIHAEGELQASEKLMQAAEMLGRQSGAMQLRYMQTLSNIAGDKSSTIVFPLPIE
HHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHH
LLQGIKNLDRKS
HHHHHHHCCCCC
>Mature Secondary Structure 
GYEMSFLVLLVLVVGLLASAFRILREYERGVVFMLGRFWKVKGPGLIMIIPGLQQMVRV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHEEECCCCEEEECCCHHHHHHH
DLRTLVLDVPTQDVISRDNVSVKVNAVVYYRVLDAQKAIIQVEDYHSATSQLAQTTLRAV
HHHHHHEECCCHHHHCCCCCEEEEEEEEEEEEHHHHHHHEEHHHHHHHHHHHHHHHHHHH
LGKHELDDMLAEREQLNNDIQQVLDAQTDAWGIKVSNVEIKHVDLDESMVRAIARQAEAE
HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEEEECCCHHHHHHHHHHHHHH
RERRAKVIHAEGELQASEKLMQAAEMLGRQSGAMQLRYMQTLSNIAGDKSSTIVFPLPIE
HHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHH
LLQGIKNLDRKS
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]