| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is yqeZ [H]
Identifier: 146284202
GI number: 146284202
Start: 4217694
End: 4219070
Strand: Direct
Name: yqeZ [H]
Synonym: PST_3890
Alternate gene names: 146284202
Gene position: 4217694-4219070 (Clockwise)
Preceding gene: 146284199
Following gene: 146284203
Centisome position: 92.34
GC content: 69.28
Gene sequence:
>1377_bases ATGCCTCGCCATCCCGCCCGCTGGCTGCTGGCCCTGCTGTTCGCGCTCGCGGTCCAGAGCGCGAGTGCCGCCGATCCGGT GACGCTGCTGCGGGTCGATGGCGCCATCGGTCCGGCCAGCGCCGATTACATCCTGCGCGGCCTGCAACACGCCCGCGACG AGGGCGCACAGCTGGTGGTGCTGGAACTGGACACCCCCGGCGGGCTGGACACCTCCATGCGCGCGATCATCAAGGCGATC CTCGCCAGCCCGATTCCGGTCGCCACCTACGTCACCCCCAGCGGCGCCCGCGCCGCCAGCGCCGGCACCTACATGCTCTA TGCCAGCCATGTCGCCGCGATGGCGCCGGGCACCAATCTCGGCGCGGCGACGCCGGTGCAGATCGGCGGCATGCCCGGTG CACCGCCGGAGCAGCCGAAGGGCGAGCGTGAAGACGACGCCAAGGCCTCCGGCGACGCCCTCGCCCGCAAGCAGGTGAAC GATGCGGCGGCCTATATCCGCGGGCTGGCCCAGCTGCGCGAACGCAACGCCGAGTGGGCCGAGCAGGCGGTGCGCGAGGC GGTCAGCCTGTCGGCCAGCGAAGCCCTGAAACTCAAGGTGATCGATTACCTGGCGCGCGACGTGGCCGACCTACTGCGTC AGCTCGACGGCAAGACGCTGGCCACCATCGAGGGCGAGGTCAGGCTGCAGACGGCCGATGCGCGCCTGATCGAACACGCG CCGGACTGGAGGGTGCGCCTGCTGGCGGTGATCACCAACCCCAGCGTGGCGCTGATTCTGATGATGATCGGCATCTACGG GCTGATCCTCGAATTCTCCAATCCCGGCATGGGCGCCGGCGGCGTGCTGGGCGGCATTTGCCTGATCCTGGCGCTGTATG CGCTGCAGCTGCTGCCGGTGAACTACGCCGGGGTGGCGCTGATCCTGCTCGGCATCGCCTTCATGGTGGCCGAGGCCTTC CTGCCCAGTTTCGGTGTGCTCGGCATCGGCGGGGTCGCCGCGTTCGTCGCCGGCGCGGTGATTCTGATCGACACCGAGGT ACCCGGCTTCGGCATTCCACTGTCGCTGATCGTGCCACTGGGCTTCGCCAGCGCGCTGCTGGTGTTCGCCATCGTCGCCA TGGCACTGAAGGCGCGCCGCCAGCGGCTGGTCGGCGGTGATGCCGAGCTGATCGGCAGCCTGGCGCCGGTCACCGGCATC TCCGCGCAGGACCCGCACAGCGGCTGGGTGCATCTGCAGGGCGAGAACTGGCAGGTACGCAGCGCCACCCCGTTGCAGGT CGGCCAGCAGGTACGGGTGGTCGCCCGGGAGGGTCTGCAATTGAACGTCGCGGCACAGCCATCAAGCAATCGAGAGGAGC TGAACCATGGGTTATGA
Upstream 100 bases:
>100_bases GGATACGCGGCGTCCTGCCTCGCCGCGCCACGACGGCGGTGGTCTAAGCTGCCAGCAAGGGCACGACACTGTGCCGTGCC GCTGCCAGAGGACATCCGCC
Downstream 100 bases:
>100_bases AATGAGTTTTCTGGTGCTGCTGGTGCTGGTCGTGGGGCTGCTCGCCTCGGCGTTCCGCATCCTGCGTGAGTACGAGCGCG GCGTGGTGTTCATGCTCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MPRHPARWLLALLFALAVQSASAADPVTLLRVDGAIGPASADYILRGLQHARDEGAQLVVLELDTPGGLDTSMRAIIKAI LASPIPVATYVTPSGARAASAGTYMLYASHVAAMAPGTNLGAATPVQIGGMPGAPPEQPKGEREDDAKASGDALARKQVN DAAAYIRGLAQLRERNAEWAEQAVREAVSLSASEALKLKVIDYLARDVADLLRQLDGKTLATIEGEVRLQTADARLIEHA PDWRVRLLAVITNPSVALILMMIGIYGLILEFSNPGMGAGGVLGGICLILALYALQLLPVNYAGVALILLGIAFMVAEAF LPSFGVLGIGGVAAFVAGAVILIDTEVPGFGIPLSLIVPLGFASALLVFAIVAMALKARRQRLVGGDAELIGSLAPVTGI SAQDPHSGWVHLQGENWQVRSATPLQVGQQVRVVAREGLQLNVAAQPSSNREELNHGL
Sequences:
>Translated_458_residues MPRHPARWLLALLFALAVQSASAADPVTLLRVDGAIGPASADYILRGLQHARDEGAQLVVLELDTPGGLDTSMRAIIKAI LASPIPVATYVTPSGARAASAGTYMLYASHVAAMAPGTNLGAATPVQIGGMPGAPPEQPKGEREDDAKASGDALARKQVN DAAAYIRGLAQLRERNAEWAEQAVREAVSLSASEALKLKVIDYLARDVADLLRQLDGKTLATIEGEVRLQTADARLIEHA PDWRVRLLAVITNPSVALILMMIGIYGLILEFSNPGMGAGGVLGGICLILALYALQLLPVNYAGVALILLGIAFMVAEAF LPSFGVLGIGGVAAFVAGAVILIDTEVPGFGIPLSLIVPLGFASALLVFAIVAMALKARRQRLVGGDAELIGSLAPVTGI SAQDPHSGWVHLQGENWQVRSATPLQVGQQVRVVAREGLQLNVAAQPSSNREELNHGL >Mature_457_residues PRHPARWLLALLFALAVQSASAADPVTLLRVDGAIGPASADYILRGLQHARDEGAQLVVLELDTPGGLDTSMRAIIKAIL ASPIPVATYVTPSGARAASAGTYMLYASHVAAMAPGTNLGAATPVQIGGMPGAPPEQPKGEREDDAKASGDALARKQVND AAAYIRGLAQLRERNAEWAEQAVREAVSLSASEALKLKVIDYLARDVADLLRQLDGKTLATIEGEVRLQTADARLIEHAP DWRVRLLAVITNPSVALILMMIGIYGLILEFSNPGMGAGGVLGGICLILALYALQLLPVNYAGVALILLGIAFMVAEAFL PSFGVLGIGGVAAFVAGAVILIDTEVPGFGIPLSLIVPLGFASALLVFAIVAMALKARRQRLVGGDAELIGSLAPVTGIS AQDPHSGWVHLQGENWQVRSATPLQVGQQVRVVAREGLQLNVAAQPSSNREELNHGL
Specific function: Unknown
COG id: COG1030
COG function: function code O; Membrane-bound serine protease (ClpP class)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002810 - InterPro: IPR002825 [H]
Pfam domain/function: PF01972 DUF114; PF01957 NfeD [H]
EC number: NA
Molecular weight: Translated: 47841; Mature: 47710
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRHPARWLLALLFALAVQSASAADPVTLLRVDGAIGPASADYILRGLQHARDEGAQLVV CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE LELDTPGGLDTSMRAIIKAILASPIPVATYVTPSGARAASAGTYMLYASHVAAMAPGTNL EEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCC GAATPVQIGGMPGAPPEQPKGEREDDAKASGDALARKQVNDAAAYIRGLAQLRERNAEWA CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH EQAVREAVSLSASEALKLKVIDYLARDVADLLRQLDGKTLATIEGEVRLQTADARLIEHA HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEHHHHHHHCC PDWRVRLLAVITNPSVALILMMIGIYGLILEFSNPGMGAGGVLGGICLILALYALQLLPV CCCEEEEEEEECCCHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCC NYAGVALILLGIAFMVAEAFLPSFGVLGIGGVAAFVAGAVILIDTEVPGFGIPLSLIVPL CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHH GFASALLVFAIVAMALKARRQRLVGGDAELIGSLAPVTGISAQDPHSGWVHLQGENWQVR HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEC SATPLQVGQQVRVVAREGLQLNVAAQPSSNREELNHGL CCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCC >Mature Secondary Structure PRHPARWLLALLFALAVQSASAADPVTLLRVDGAIGPASADYILRGLQHARDEGAQLVV CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE LELDTPGGLDTSMRAIIKAILASPIPVATYVTPSGARAASAGTYMLYASHVAAMAPGTNL EEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCC GAATPVQIGGMPGAPPEQPKGEREDDAKASGDALARKQVNDAAAYIRGLAQLRERNAEWA CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH EQAVREAVSLSASEALKLKVIDYLARDVADLLRQLDGKTLATIEGEVRLQTADARLIEHA HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEHHHHHHHCC PDWRVRLLAVITNPSVALILMMIGIYGLILEFSNPGMGAGGVLGGICLILALYALQLLPV CCCEEEEEEEECCCHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCC NYAGVALILLGIAFMVAEAFLPSFGVLGIGGVAAFVAGAVILIDTEVPGFGIPLSLIVPL CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHH GFASALLVFAIVAMALKARRQRLVGGDAELIGSLAPVTGISAQDPHSGWVHLQGENWQVR HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEC SATPLQVGQQVRVVAREGLQLNVAAQPSSNREELNHGL CCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]