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The map label for this gene is comF [H]

Identifier: 146284179

GI number: 146284179

Start: 4188417

End: 4189121

Strand: Direct

Name: comF [H]

Synonym: PST_3867

Alternate gene names: 146284179

Gene position: 4188417-4189121 (Clockwise)

Preceding gene: 146284168

Following gene: 146284180

Centisome position: 91.7

GC content: 69.08

Gene sequence:

>705_bases
ATGGTTTACAACTGGTCAATTATTGAACACCACTGCCTGCTCTGCGACGAGCGCTGCGAGGGTCAGCCACTGTGCAGCCC
CTGCGAGGCGGATCTGCCGTGGCTCGACGGTCGGTGCACGGTCTGCGCGGTCCCGCTGCCCAGCCGCGGGCTGGTCTGTG
GCGAATGCCTGAAGCGACCGCCCAGCTACGATCACGTCGAAGTGCCCTGGCGCTTCGCCTTCCCGGTGGATGCGCTGATC
ACCCGCTTCAAGCACCAGGCACGCTGGCCCTATGGCCGGCTGCTCGGCGAACGCCTGGCCCATCATCTGGAGCATGCCTT
CGCCGAGGGGCTGCCGCGGCCGGACCTGCTGCTGCCGGTGCCTTTGGCCCGTCGTCGCTTGCGCCAGCGCGGTTTCAACC
AGGCGCAGATGCTCGCCGACTGGCTGAGCCGCCCACTGGGCATCGCCACCGACGCCCGCGCGCTCGAACGTGTGCTCGAC
ACCCCGGCTCAGCAGCAGCTGGACGCCGCCACCCGCCGCCGCAACCTGCGTCAGGCCTTCGCCATCGCAACCGGTGCCGA
CGTCAAGGGCCGGCATCTGGCGCTGGTCGACGATGTGCTGACCACCGGCGCGACAGCCGAAGCCCTTGCGCGCCTGCTCA
AGCGCGCCGGCGCCGAACGGGTCGATGTCTATTGCCTGGCGCGCACCCCGAAACCAGGCGAATGA

Upstream 100 bases:

>100_bases
CGCTCATGGGCATTCCTTGTAATTAATAGCGGCGCGGCGGCCTGACACGGATGCGGAATGGTTAGCCAAGCCCGATACGC
TGTCAACCAGGAACGGAATC

Downstream 100 bases:

>100_bases
AGCCGCCGACCGATGGAGGGCGTACACTGGACGACCTAGTCAGCGGAGCCGGTCATGTCCCATCCCTTCGACACACTCAC
GCCGGACCTGGTCCTCGACG

Product: phosphoribosyl transferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MVYNWSIIEHHCLLCDERCEGQPLCSPCEADLPWLDGRCTVCAVPLPSRGLVCGECLKRPPSYDHVEVPWRFAFPVDALI
TRFKHQARWPYGRLLGERLAHHLEHAFAEGLPRPDLLLPVPLARRRLRQRGFNQAQMLADWLSRPLGIATDARALERVLD
TPAQQQLDAATRRRNLRQAFAIATGADVKGRHLALVDDVLTTGATAEALARLLKRAGAERVDVYCLARTPKPGE

Sequences:

>Translated_234_residues
MVYNWSIIEHHCLLCDERCEGQPLCSPCEADLPWLDGRCTVCAVPLPSRGLVCGECLKRPPSYDHVEVPWRFAFPVDALI
TRFKHQARWPYGRLLGERLAHHLEHAFAEGLPRPDLLLPVPLARRRLRQRGFNQAQMLADWLSRPLGIATDARALERVLD
TPAQQQLDAATRRRNLRQAFAIATGADVKGRHLALVDDVLTTGATAEALARLLKRAGAERVDVYCLARTPKPGE
>Mature_234_residues
MVYNWSIIEHHCLLCDERCEGQPLCSPCEADLPWLDGRCTVCAVPLPSRGLVCGECLKRPPSYDHVEVPWRFAFPVDALI
TRFKHQARWPYGRLLGERLAHHLEHAFAEGLPRPDLLLPVPLARRRLRQRGFNQAQMLADWLSRPLGIATDARALERVLD
TPAQQQLDAATRRRNLRQAFAIATGADVKGRHLALVDDVLTTGATAEALARLLKRAGAERVDVYCLARTPKPGE

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=207, Percent_Identity=38.1642512077295, Blast_Score=117, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26262; Mature: 26262

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYNWSIIEHHCLLCDERCEGQPLCSPCEADLPWLDGRCTVCAVPLPSRGLVCGECLKRP
CEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCCC
PSYDHVEVPWRFAFPVDALITRFKHQARWPYGRLLGERLAHHLEHAFAEGLPRPDLLLPV
CCCCCEECCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
PLARRRLRQRGFNQAQMLADWLSRPLGIATDARALERVLDTPAQQQLDAATRRRNLRQAF
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AIATGADVKGRHLALVDDVLTTGATAEALARLLKRAGAERVDVYCLARTPKPGE
HHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MVYNWSIIEHHCLLCDERCEGQPLCSPCEADLPWLDGRCTVCAVPLPSRGLVCGECLKRP
CEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCCC
PSYDHVEVPWRFAFPVDALITRFKHQARWPYGRLLGERLAHHLEHAFAEGLPRPDLLLPV
CCCCCEECCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
PLARRRLRQRGFNQAQMLADWLSRPLGIATDARALERVLDTPAQQQLDAATRRRNLRQAF
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AIATGADVKGRHLALVDDVLTTGATAEALARLLKRAGAERVDVYCLARTPKPGE
HHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]