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The map label for this gene is ybeY [C]

Identifier: 146284075

GI number: 146284075

Start: 4071386

End: 4071868

Strand: Direct

Name: ybeY [C]

Synonym: PST_3763

Alternate gene names: 146284075

Gene position: 4071386-4071868 (Clockwise)

Preceding gene: 146284074

Following gene: 146284076

Centisome position: 89.14

GC content: 64.6

Gene sequence:

>483_bases
GTGATTGAACTCGACCTGCAGTGCGCCAGCACTGGCGCCGCGCCCGCTGCGGCGGACCTGCAGCGCTGGTGCGAACTGGC
GCTGCGTCAGCGCAGTGGCGACTCCGAGCTGACCATTCGCCTGGTCGACGAGGAGGAAGGCCGCGAGCTCAACCGCACCT
GGCGTCAGAAGGACTACGCCACCAACGTGCTGTCGTTCCCGGCCGATGTGCCGGACGAATTTCTCGACATTCCGCTGCTC
GGTGACCTGGTCATCTGCGTGCCGGTGGTCGAGCGCGAGGCAGCGGAACAGGGCAAGACCCTCGACGCGCACTGGGCGCA
TCTGGTCATCCATGGCTGCCTGCATCTGCTCGGCTACGATCACATCGAAGATGCCGAAGCCGAGGAGATGGAAGCGCTTG
AGCGCCAGCTGCTGGCTGAACTGGGGCACCCCGACCCCTATGCTGAAGATTCGCCCGAAACGGGCATTTGCAAGGACTCT
TGA

Upstream 100 bases:

>100_bases
GTGGTGCGCCACCCGCTGGTGCAGCGCATCGTCGAGGCGTACGAGTCGTTCGAGGATCGTCAGTCGCCGACCAGCAAGCG
CGCCGCGCAGGATGCCGCCG

Downstream 100 bases:

>100_bases
GTCAACGACATGAGCGAAGATCGATCGATCAGCGGGCAGAAGACCTGGCTGGAAAGAATCACCCAGGCTTTTGCCCATGA
ACCCAAGAATCGCCAGGAGC

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MIELDLQCASTGAAPAAADLQRWCELALRQRSGDSELTIRLVDEEEGRELNRTWRQKDYATNVLSFPADVPDEFLDIPLL
GDLVICVPVVEREAAEQGKTLDAHWAHLVIHGCLHLLGYDHIEDAEAEEMEALERQLLAELGHPDPYAEDSPETGICKDS

Sequences:

>Translated_160_residues
MIELDLQCASTGAAPAAADLQRWCELALRQRSGDSELTIRLVDEEEGRELNRTWRQKDYATNVLSFPADVPDEFLDIPLL
GDLVICVPVVEREAAEQGKTLDAHWAHLVIHGCLHLLGYDHIEDAEAEEMEALERQLLAELGHPDPYAEDSPETGICKDS
>Mature_160_residues
MIELDLQCASTGAAPAAADLQRWCELALRQRSGDSELTIRLVDEEEGRELNRTWRQKDYATNVLSFPADVPDEFLDIPLL
GDLVICVPVVEREAAEQGKTLDAHWAHLVIHGCLHLLGYDHIEDAEAEEMEALERQLLAELGHPDPYAEDSPETGICKDS

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=147, Percent_Identity=55.1020408163265, Blast_Score=145, Evalue=9e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PSEU5 (A4VQY5)

Other databases:

- EMBL:   CP000304
- RefSeq:   YP_001174228.1
- ProteinModelPortal:   A4VQY5
- SMR:   A4VQY5
- STRING:   A4VQY5
- GeneID:   5096724
- GenomeReviews:   CP000304_GR
- KEGG:   psa:PST_3763
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- PhylomeDB:   A4VQY5
- ProtClustDB:   PRK00016
- BioCyc:   PSTU379731:PST_3763-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17831; Mature: 17831

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELDLQCASTGAAPAAADLQRWCELALRQRSGDSELTIRLVDEEEGRELNRTWRQKDYA
CEEECCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
TNVLSFPADVPDEFLDIPLLGDLVICVPVVEREAAEQGKTLDAHWAHLVIHGCLHLLGYD
HHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
HIEDAEAEEMEALERQLLAELGHPDPYAEDSPETGICKDS
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIELDLQCASTGAAPAAADLQRWCELALRQRSGDSELTIRLVDEEEGRELNRTWRQKDYA
CEEECCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
TNVLSFPADVPDEFLDIPLLGDLVICVPVVEREAAEQGKTLDAHWAHLVIHGCLHLLGYD
HHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
HIEDAEAEEMEALERQLLAELGHPDPYAEDSPETGICKDS
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA