Click here to switch to the map view.

The map label for this gene is xseB [H]

Identifier: 146284016

GI number: 146284016

Start: 4005612

End: 4005953

Strand: Direct

Name: xseB [H]

Synonym: PST_3704

Alternate gene names: 146284016

Gene position: 4005612-4005953 (Clockwise)

Preceding gene: 146284015

Following gene: 146284017

Centisome position: 87.7

GC content: 63.74

Gene sequence:

>342_bases
TTGATACACATCACGCGGGCAAACCTTGTGGCTGCCACCGGCGTTTCTTTGCTAATGTCGCGCCCGTTTCCGACTCGCCG
CCGACGACAGGTTCCCGCCATGGCCCGCAAGAAAGCTGCACTCGATTTCGAACAATCCCTTGCCGAGCTGCAACAGCTGG
TGGAGCGCCTGGAGAGCGGCGAGCTGTCGCTGGAAGACTCGCTGACCTGCTTCGAACAGGGCATCGGCCTGACCCGCGAC
TGCCAGGCGGCGCTGAGCCAGGCCGAGCAGAAGGTGCAGATCCTGCTGGAACGCGACGGCAGCCTGCAGGAAGCCCCCTT
CGAGTCGGACCCCGAAGCATGA

Upstream 100 bases:

>100_bases
CCGCTCGCCGAACGGGAAAGGCGACTGCGCAAGCAGGACCACTGAGCAGGACCACTGAGCGGCGGCGCGGGTTGGAGGGC
ACCCCGCCGGCCTACGCAGG

Downstream 100 bases:

>100_bases
TGATCGGCGACTACCAGAAAGGCTGTCAGCAGCGCGTCGACGGCTGCCTCGAAGCTCTCTTCGTCCCGCCGCTGCCGCAG
CTCGAGCGGCTCTACCAGGC

Product: exodeoxyribonuclease VII, small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MIHITRANLVAATGVSLLMSRPFPTRRRRQVPAMARKKAALDFEQSLAELQQLVERLESGELSLEDSLTCFEQGIGLTRD
CQAALSQAEQKVQILLERDGSLQEAPFESDPEA

Sequences:

>Translated_113_residues
MIHITRANLVAATGVSLLMSRPFPTRRRRQVPAMARKKAALDFEQSLAELQQLVERLESGELSLEDSLTCFEQGIGLTRD
CQAALSQAEQKVQILLERDGSLQEAPFESDPEA
>Mature_113_residues
MIHITRANLVAATGVSLLMSRPFPTRRRRQVPAMARKKAALDFEQSLAELQQLVERLESGELSLEDSLTCFEQGIGLTRD
CQAALSQAEQKVQILLERDGSLQEAPFESDPEA

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

Organism=Escherichia coli, GI1786624, Length=77, Percent_Identity=49.3506493506493, Blast_Score=70, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 12553; Mature: 12553

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHITRANLVAATGVSLLMSRPFPTRRRRQVPAMARKKAALDFEQSLAELQQLVERLESG
CEEECCHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
ELSLEDSLTCFEQGIGLTRDCQAALSQAEQKVQILLERDGSLQEAPFESDPEA
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIHITRANLVAATGVSLLMSRPFPTRRRRQVPAMARKKAALDFEQSLAELQQLVERLESG
CEEECCHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
ELSLEDSLTCFEQGIGLTRDCQAALSQAEQKVQILLERDGSLQEAPFESDPEA
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA