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The map label for this gene is nifM [H]

Identifier: 146284004

GI number: 146284004

Start: 3991144

End: 3992322

Strand: Direct

Name: nifM [H]

Synonym: PST_3692

Alternate gene names: 146284004

Gene position: 3991144-3992322 (Clockwise)

Preceding gene: 146284003

Following gene: 146284010

Centisome position: 87.38

GC content: 69.8

Gene sequence:

>1179_bases
ATGCGCAACAACAACAAGATTCCCGATGCCTGTCTGCAATGCTATGTCCATCACCGCCAACGGCTGGTAGCCCATCTGAC
CCGCCTCGGCGGCTGCCGAGCACTGGCCGAGGACCTAGCCCAGGATGCCTGGCTGAAACTGGCGCAGGTCATGCCCGAGC
AGAGTCTCGATAATCCAAAGGCCTATCTCTTTCGCATCGCCACCAATCTCTTGCGCGATGCCCTGCGCCATCGCGCGCTT
GTCGGTGCCGGCGACGAGGCACCGCTGGAACTGATCGAGGCCGTGCAGGCCGACCCCTGCGGGCTGGTGGAACACCAGTG
TGCGCTGCGATGCGTCCTGCGCCAGCTCGACGACTTGCCGCCACGCTGTCGCCAGGTGTTCGAACTGGCGCGGCTGGAAG
GGCTCAGCCAGGCGGAGATCGCCGAGCGTCTGGGCATTTCGGTGAACACCGTGATCGCTCAGCTGGCCAAGGCGCGCCAG
GGCTGGAGCGCCCGTAATTTTCAGGCCGCCCGTGCCCTGGTGGTGCGTGAACTGCTGCGCCAGCGCGCCGAGGCCCTGGG
CCTGAGCCTGCTGGATGCCGAGGGCCGCGAGGATGACCGCACCCTGGCCAGCCTGCTGGAGCGCGAACTGCAGGTCCCCG
AGCCGGACGACGCCGCCTGCCGGCGCTTCTTCGAGCACCACCGCGAGCGCTTCGCCGAACCCTTGCTGCTGCGGGTCCGC
CACATCCTGCTGCCGGCCGCGCCGGACGATGCCCGGGCCAGGGACGCCCAGTACCGCCTGGGCCAGAAACTGCTGCGTCA
GTTGCAGGCAGCACCGGCGCGCTTCACCGAGCTGGCCCAGCGTCATTCCGCCTGCCCGTCGAAGGAGGATGGCGGGGCGC
TGGGCTGGCTGGCGCCGGGGCAGACCGTGCCGGAGCTGGATCGCGCCCTGCGCCACCTGGCCATCGGTCTGCACGAGCGC
CCGCTGGCCTCGCGCTACGGCTGGCACCTGGTCAGCGTCGACGAGCGCCGGGAGGAACGGCCCCTGCCCTACGAGCAGGT
GGCCGAGCGGGTCCGCCACAGCCTGCGGGAGCAGGCCACCCGGCGCGCGTTGCGCCATTACCTGCTGGCGTTGGAGGAGG
AAATCGGCGTCGAGGGCCTGCGTCTGGACGCCGACGCCGATGGCGCGCTGATGCGCTGA

Upstream 100 bases:

>100_bases
CGCTGGACGGCTGATCGGCATCGATAGCGGCAAAGCGCCTGCAATTGCGAAGCGTTCGCATCTGAGTTAGGTTCGTGCCC
CCTCCCGGTGGCACGCACCC

Downstream 100 bases:

>100_bases
GCGCCGCCCGCGGCCGGGCGGCGCGGAGCGGGTCAGACGCGCTCGATGCGCGCCGGCAGCCCCTGGCGCACCGCAGCGCC
CGAGACCCAGTCGATCCAGA

Product: PpiC-type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MRNNNKIPDACLQCYVHHRQRLVAHLTRLGGCRALAEDLAQDAWLKLAQVMPEQSLDNPKAYLFRIATNLLRDALRHRAL
VGAGDEAPLELIEAVQADPCGLVEHQCALRCVLRQLDDLPPRCRQVFELARLEGLSQAEIAERLGISVNTVIAQLAKARQ
GWSARNFQAARALVVRELLRQRAEALGLSLLDAEGREDDRTLASLLERELQVPEPDDAACRRFFEHHRERFAEPLLLRVR
HILLPAAPDDARARDAQYRLGQKLLRQLQAAPARFTELAQRHSACPSKEDGGALGWLAPGQTVPELDRALRHLAIGLHER
PLASRYGWHLVSVDERREERPLPYEQVAERVRHSLREQATRRALRHYLLALEEEIGVEGLRLDADADGALMR

Sequences:

>Translated_392_residues
MRNNNKIPDACLQCYVHHRQRLVAHLTRLGGCRALAEDLAQDAWLKLAQVMPEQSLDNPKAYLFRIATNLLRDALRHRAL
VGAGDEAPLELIEAVQADPCGLVEHQCALRCVLRQLDDLPPRCRQVFELARLEGLSQAEIAERLGISVNTVIAQLAKARQ
GWSARNFQAARALVVRELLRQRAEALGLSLLDAEGREDDRTLASLLERELQVPEPDDAACRRFFEHHRERFAEPLLLRVR
HILLPAAPDDARARDAQYRLGQKLLRQLQAAPARFTELAQRHSACPSKEDGGALGWLAPGQTVPELDRALRHLAIGLHER
PLASRYGWHLVSVDERREERPLPYEQVAERVRHSLREQATRRALRHYLLALEEEIGVEGLRLDADADGALMR
>Mature_392_residues
MRNNNKIPDACLQCYVHHRQRLVAHLTRLGGCRALAEDLAQDAWLKLAQVMPEQSLDNPKAYLFRIATNLLRDALRHRAL
VGAGDEAPLELIEAVQADPCGLVEHQCALRCVLRQLDDLPPRCRQVFELARLEGLSQAEIAERLGISVNTVIAQLAKARQ
GWSARNFQAARALVVRELLRQRAEALGLSLLDAEGREDDRTLASLLERELQVPEPDDAACRRFFEHHRERFAEPLLLRVR
HILLPAAPDDARARDAQYRLGQKLLRQLQAAPARFTELAQRHSACPSKEDGGALGWLAPGQTVPELDRALRHLAIGLHER
PLASRYGWHLVSVDERREERPLPYEQVAERVRHSLREQATRRALRHYLLALEEEIGVEGLRLDADADGALMR

Specific function: Required for the activation and stabilization of the iron-component (nifH) of nitrogenase. Probable PPIase [H]

COG id: COG0760

COG function: function code O; Parvulin-like peptidyl-prolyl isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PpiC domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014282
- InterPro:   IPR000297
- InterPro:   IPR023058
- InterPro:   IPR008880 [H]

Pfam domain/function: PF00639 Rotamase [H]

EC number: NA

Molecular weight: Translated: 44336; Mature: 44336

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50198 PPIC_PPIASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNNNKIPDACLQCYVHHRQRLVAHLTRLGGCRALAEDLAQDAWLKLAQVMPEQSLDNPK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AYLFRIATNLLRDALRHRALVGAGDEAPLELIEAVQADPCGLVEHQCALRCVLRQLDDLP
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
PRCRQVFELARLEGLSQAEIAERLGISVNTVIAQLAKARQGWSARNFQAARALVVRELLR
HHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
QRAEALGLSLLDAEGREDDRTLASLLERELQVPEPDDAACRRFFEHHRERFAEPLLLRVR
HHHHHHCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HILLPAAPDDARARDAQYRLGQKLLRQLQAAPARFTELAQRHSACPSKEDGGALGWLAPG
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEECCCCC
QTVPELDRALRHLAIGLHERPLASRYGWHLVSVDERREERPLPYEQVAERVRHSLREQAT
CCCHHHHHHHHHHHHCCCCCCHHHHCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHH
RRALRHYLLALEEEIGVEGLRLDADADGALMR
HHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
>Mature Secondary Structure
MRNNNKIPDACLQCYVHHRQRLVAHLTRLGGCRALAEDLAQDAWLKLAQVMPEQSLDNPK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AYLFRIATNLLRDALRHRALVGAGDEAPLELIEAVQADPCGLVEHQCALRCVLRQLDDLP
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
PRCRQVFELARLEGLSQAEIAERLGISVNTVIAQLAKARQGWSARNFQAARALVVRELLR
HHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
QRAEALGLSLLDAEGREDDRTLASLLERELQVPEPDDAACRRFFEHHRERFAEPLLLRVR
HHHHHHCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HILLPAAPDDARARDAQYRLGQKLLRQLQAAPARFTELAQRHSACPSKEDGGALGWLAPG
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEECCCCC
QTVPELDRALRHLAIGLHERPLASRYGWHLVSVDERREERPLPYEQVAERVRHSLREQAT
CCCHHHHHHHHHHHHCCCCCCHHHHCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHH
RRALRHYLLALEEEIGVEGLRLDADADGALMR
HHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1885524 [H]