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The map label for this gene is yciR [C]

Identifier: 146284003

GI number: 146284003

Start: 3990011

End: 3991057

Strand: Direct

Name: yciR [C]

Synonym: PST_3691

Alternate gene names: 146284003

Gene position: 3990011-3991057 (Clockwise)

Preceding gene: 146284002

Following gene: 146284004

Centisome position: 87.36

GC content: 67.81

Gene sequence:

>1047_bases
ATGCTGCTGCTCGACGGCAGCGACCACGCCCGCGCCGAGCAGCTGGCCCAGTGCATCATCGAAGGCTTCCAGCCGCCGGT
GCGCATCGGCCAGTACGAGTGCTACGTCAGCCCGAGCATCGGCGTTGCCATCAGCGACGGCCGGCACAGTGCCAGCGACC
TGCTCAAGCAGGTGGACCTCGCCCTGTATGCGGCCAAGGATGCCGGCCGCAACTGCACGGTGTTCTACAACGAGGCGCTC
AGCGATGCCGCCGCCGGCCGCCGCGCCCTCGAGCAGGCTCTGCGCCGGGCGCTGGACCGGGACGAGTTCGTGCTGCATTA
CCAGGCCCAGGTCAATGCCCAGGGCGAGCCCGAAGTCATGGAAGCGCTGCTGCGCTGGAATTCGCCGGAGCGCGGACTGG
TACCGCCCGGAGAATTCATCCCGGTGCTGGAAGAGAGCGGCATGATCATCGAGGCGACCCGCTGGGTGGTCCGAGAGGCC
TGCCGCCAGGCCTGCCGCTGGCACGCCATGGGCCATCCGCTTCGCATCGCGATCAACCTGTCGCCGCTGGACTTCCGCCA
GGCCGATCTGGCGGGCAGCCTGCTGGCGATCCTCGCCGAAGAGGGTGCGTCGCCCGACATGCTGGAGTTGGAGATCACCG
AAAGCGCGCTGCTGGAGGCCGACGAGCATGTGCAGCAGACCCTCGGCCGTCTCAAGGCCGCCGGTTTGCCACTGCTGCTC
GATGACTTCGGCACCGGCTATGCCTCGCTGACGTACCTGCAGCGCTTCCGCTTCGACGGTATCAAGATCGACCGTGAATT
CGTCAGCGGGCTGCCGGACAGCGAGCAATCGGTAGCCCTGGTGCGGGGCATCCTCACCATGGCCAGCCACCTTGGGCTGC
ATGTGGTGGCCGAAGGGGTGGAGAACGAGCGTCAGGCGGCCTTCCTGCGCCTCAACGGCTGCCCCAGCCTGCAAGGCTTC
CACTATGCGCGACCGCAGCCGGCAGCGCAGTGCCGTCTGCAGCTGAATGGCCGGCCGGTCAATCTGCAGCTGCCGCTGGA
CGGCTGA

Upstream 100 bases:

>100_bases
CCACGAGATCGGCGACAAGCTGCTGGTGCAGATCGGCGACCGCCTGGGCCGGCTGATGCCGGAGCATGCGCTGCTGTCAC
GCAGCGGCGGCGACGAATTC

Downstream 100 bases:

>100_bases
TCGGCATCGATAGCGGCAAAGCGCCTGCAATTGCGAAGCGTTCGCATCTGAGTTAGGTTCGTGCCCCCTCCCGGTGGCAC
GCACCCATGCGCAACAACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MLLLDGSDHARAEQLAQCIIEGFQPPVRIGQYECYVSPSIGVAISDGRHSASDLLKQVDLALYAAKDAGRNCTVFYNEAL
SDAAAGRRALEQALRRALDRDEFVLHYQAQVNAQGEPEVMEALLRWNSPERGLVPPGEFIPVLEESGMIIEATRWVVREA
CRQACRWHAMGHPLRIAINLSPLDFRQADLAGSLLAILAEEGASPDMLELEITESALLEADEHVQQTLGRLKAAGLPLLL
DDFGTGYASLTYLQRFRFDGIKIDREFVSGLPDSEQSVALVRGILTMASHLGLHVVAEGVENERQAAFLRLNGCPSLQGF
HYARPQPAAQCRLQLNGRPVNLQLPLDG

Sequences:

>Translated_348_residues
MLLLDGSDHARAEQLAQCIIEGFQPPVRIGQYECYVSPSIGVAISDGRHSASDLLKQVDLALYAAKDAGRNCTVFYNEAL
SDAAAGRRALEQALRRALDRDEFVLHYQAQVNAQGEPEVMEALLRWNSPERGLVPPGEFIPVLEESGMIIEATRWVVREA
CRQACRWHAMGHPLRIAINLSPLDFRQADLAGSLLAILAEEGASPDMLELEITESALLEADEHVQQTLGRLKAAGLPLLL
DDFGTGYASLTYLQRFRFDGIKIDREFVSGLPDSEQSVALVRGILTMASHLGLHVVAEGVENERQAAFLRLNGCPSLQGF
HYARPQPAAQCRLQLNGRPVNLQLPLDG
>Mature_348_residues
MLLLDGSDHARAEQLAQCIIEGFQPPVRIGQYECYVSPSIGVAISDGRHSASDLLKQVDLALYAAKDAGRNCTVFYNEAL
SDAAAGRRALEQALRRALDRDEFVLHYQAQVNAQGEPEVMEALLRWNSPERGLVPPGEFIPVLEESGMIIEATRWVVREA
CRQACRWHAMGHPLRIAINLSPLDFRQADLAGSLLAILAEEGASPDMLELEITESALLEADEHVQQTLGRLKAAGLPLLL
DDFGTGYASLTYLQRFRFDGIKIDREFVSGLPDSEQSVALVRGILTMASHLGLHVVAEGVENERQAAFLRLNGCPSLQGF
HYARPQPAAQCRLQLNGRPVNLQLPLDG

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=330, Percent_Identity=37.8787878787879, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI87081921, Length=327, Percent_Identity=33.6391437308869, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI226510982, Length=293, Percent_Identity=33.7883959044369, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=33.3333333333333, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=34.8, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=34.1666666666667, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1786507, Length=241, Percent_Identity=34.4398340248963, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1788502, Length=236, Percent_Identity=31.7796610169492, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787055, Length=276, Percent_Identity=28.2608695652174, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI87082096, Length=259, Percent_Identity=31.2741312741313, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1788849, Length=302, Percent_Identity=30.4635761589404, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=30.6382978723404, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787410, Length=177, Percent_Identity=29.3785310734463, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 38226; Mature: 38226

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLDGSDHARAEQLAQCIIEGFQPPVRIGQYECYVSPSIGVAISDGRHSASDLLKQVDL
CEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHH
ALYAAKDAGRNCTVFYNEALSDAAAGRRALEQALRRALDRDEFVLHYQAQVNAQGEPEVM
HHEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHH
EALLRWNSPERGLVPPGEFIPVLEESGMIIEATRWVVREACRQACRWHAMGHPLRIAINL
HHHHHCCCCCCCCCCCCCCCHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
SPLDFRQADLAGSLLAILAEEGASPDMLELEITESALLEADEHVQQTLGRLKAAGLPLLL
CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEE
DDFGTGYASLTYLQRFRFDGIKIDREFVSGLPDSEQSVALVRGILTMASHLGLHVVAEGV
CCCCCCHHHHHHHHHHHCCCEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHEEHHCC
ENERQAAFLRLNGCPSLQGFHYARPQPAAQCRLQLNGRPVNLQLPLDG
CCCCCEEEEEECCCCCCCCCCCCCCCCHHEEEEEECCEEEEEEECCCC
>Mature Secondary Structure
MLLLDGSDHARAEQLAQCIIEGFQPPVRIGQYECYVSPSIGVAISDGRHSASDLLKQVDL
CEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHH
ALYAAKDAGRNCTVFYNEALSDAAAGRRALEQALRRALDRDEFVLHYQAQVNAQGEPEVM
HHEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHH
EALLRWNSPERGLVPPGEFIPVLEESGMIIEATRWVVREACRQACRWHAMGHPLRIAINL
HHHHHCCCCCCCCCCCCCCCHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
SPLDFRQADLAGSLLAILAEEGASPDMLELEITESALLEADEHVQQTLGRLKAAGLPLLL
CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEE
DDFGTGYASLTYLQRFRFDGIKIDREFVSGLPDSEQSVALVRGILTMASHLGLHVVAEGV
CCCCCCHHHHHHHHHHHCCCEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHEEHHCC
ENERQAAFLRLNGCPSLQGFHYARPQPAAQCRLQLNGRPVNLQLPLDG
CCCCCEEEEEECCCCCCCCCCCCCCCCHHEEEEEECCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]