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The map label for this gene is rhaS [H]

Identifier: 146283945

GI number: 146283945

Start: 3917116

End: 3918012

Strand: Direct

Name: rhaS [H]

Synonym: PST_3628

Alternate gene names: 146283945

Gene position: 3917116-3918012 (Clockwise)

Preceding gene: 146283940

Following gene: 146283949

Centisome position: 85.76

GC content: 61.09

Gene sequence:

>897_bases
ATGGCTAGCCTGCGCTACGGCCGCCAGCTCGGCCTTGACCTCAAACCGGCATTCGAAACCCGCCTGGTCAGCCCGGACGG
TCAGGCGGTGAATACCTTCAGTGGGACACCCATTACAGTAGATGGCCCGCTGGACAACGCCGACATGGTGATCCTGCCGG
CGTTCTGGGGAGATTTCGACGCACTCTGCCTGCAGTACCCCGAAGTGGCACCCTGGTTGTCCGAGCGACATGCCGCGGGC
AGTGTCATCTGCGGCGAAGCCACCGGGGTGTTTTGGATGGCCCAGGCCGGGCTGCTGGAAGGCCGTGAGGCGACCACCCA
TTGGCGCTTTGCCAATGACTTTGCCGAACGCTTCCCTGGCGTGAACTTCAGCGCCGACAAGCACCTCACCGATAGCGACA
ATCTCTACTGCGCAGGCGGCACGACCTCGGCCAGCGACCTGTACATGTATCTGGTAGAGCGTTTCTGCGGCGCCCATGTC
GCCCAAGGCATGGCGCGCGATGTGCTGTTCGAACTGCAACGTAGCTACAGCCCCGGACGATTGGGTTTCGGCGGGCAGAA
GCTGCATCTGGACACGCGGATTCTGCAGATTCAGGAATGGCTGGAAGCCAACTTCGCCGAAAAGTTTCGCTTCGAAGACG
TGGCTCGCCAGCATGGCATGAGCATTCGCAACTTCATGCGGCGCTTCCAGGCCGCTACCGGCGACAAACCCCTGCACTAT
CTGCAGCGACTGCGTATCGAGACGGCAAAGAGTCTGCTCGCCACCACCGGCAAGAGCATCAAGACAATCAGCTACGAAGT
GGGTTACGACGATGCCAGCTTCTTTGCCCGGCTGTTCCGCCAGCACACGGAGCTATCGCCGAACCACTATCGGCAGAAGT
ATCGGCCGGCATCCTAG

Upstream 100 bases:

>100_bases
GAATCGTATGACCCATCTCGCCTCGATCCAGCGCGTCAGCATATTGGCCACCGAAGGGGTTTTCGCCTCGACGCTCATGC
AGGCCAAGGACTTTTTCCAT

Downstream 100 bases:

>100_bases
GGCAAACGGAAAAGCCATGCGTGCTGAAGCGGGCTGCCGATTGCAGCGCGAGGCCTGGCAGGGAGACCGCTCCGACACCA
GCGCAGTAATCGTGCGGGCG

Product: transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MASLRYGRQLGLDLKPAFETRLVSPDGQAVNTFSGTPITVDGPLDNADMVILPAFWGDFDALCLQYPEVAPWLSERHAAG
SVICGEATGVFWMAQAGLLEGREATTHWRFANDFAERFPGVNFSADKHLTDSDNLYCAGGTTSASDLYMYLVERFCGAHV
AQGMARDVLFELQRSYSPGRLGFGGQKLHLDTRILQIQEWLEANFAEKFRFEDVARQHGMSIRNFMRRFQAATGDKPLHY
LQRLRIETAKSLLATTGKSIKTISYEVGYDDASFFARLFRQHTELSPNHYRQKYRPAS

Sequences:

>Translated_298_residues
MASLRYGRQLGLDLKPAFETRLVSPDGQAVNTFSGTPITVDGPLDNADMVILPAFWGDFDALCLQYPEVAPWLSERHAAG
SVICGEATGVFWMAQAGLLEGREATTHWRFANDFAERFPGVNFSADKHLTDSDNLYCAGGTTSASDLYMYLVERFCGAHV
AQGMARDVLFELQRSYSPGRLGFGGQKLHLDTRILQIQEWLEANFAEKFRFEDVARQHGMSIRNFMRRFQAATGDKPLHY
LQRLRIETAKSLLATTGKSIKTISYEVGYDDASFFARLFRQHTELSPNHYRQKYRPAS
>Mature_297_residues
ASLRYGRQLGLDLKPAFETRLVSPDGQAVNTFSGTPITVDGPLDNADMVILPAFWGDFDALCLQYPEVAPWLSERHAAGS
VICGEATGVFWMAQAGLLEGREATTHWRFANDFAERFPGVNFSADKHLTDSDNLYCAGGTTSASDLYMYLVERFCGAHVA
QGMARDVLFELQRSYSPGRLGFGGQKLHLDTRILQIQEWLEANFAEKFRFEDVARQHGMSIRNFMRRFQAATGDKPLHYL
QRLRIETAKSLLATTGKSIKTISYEVGYDDASFFARLFRQHTELSPNHYRQKYRPAS

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=101, Percent_Identity=35.6435643564356, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33569; Mature: 33438

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLRYGRQLGLDLKPAFETRLVSPDGQAVNTFSGTPITVDGPLDNADMVILPAFWGDFD
CCCCCCCHHCCCCCCCCHHHEEECCCCCEEECCCCCCEEEECCCCCCCEEEEECCCCCHH
ALCLQYPEVAPWLSERHAAGSVICGEATGVFWMAQAGLLEGREATTHWRFANDFAERFPG
HHHHCCCCCCHHHHHHCCCCCEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
VNFSADKHLTDSDNLYCAGGTTSASDLYMYLVERFCGAHVAQGMARDVLFELQRSYSPGR
CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LGFGGQKLHLDTRILQIQEWLEANFAEKFRFEDVARQHGMSIRNFMRRFQAATGDKPLHY
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHH
LQRLRIETAKSLLATTGKSIKTISYEVGYDDASFFARLFRQHTELSPNHYRQKYRPAS
HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
ASLRYGRQLGLDLKPAFETRLVSPDGQAVNTFSGTPITVDGPLDNADMVILPAFWGDFD
CCCCCCHHCCCCCCCCHHHEEECCCCCEEECCCCCCEEEECCCCCCCEEEEECCCCCHH
ALCLQYPEVAPWLSERHAAGSVICGEATGVFWMAQAGLLEGREATTHWRFANDFAERFPG
HHHHCCCCCCHHHHHHCCCCCEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
VNFSADKHLTDSDNLYCAGGTTSASDLYMYLVERFCGAHVAQGMARDVLFELQRSYSPGR
CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LGFGGQKLHLDTRILQIQEWLEANFAEKFRFEDVARQHGMSIRNFMRRFQAATGDKPLHY
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHH
LQRLRIETAKSLLATTGKSIKTISYEVGYDDASFFARLFRQHTELSPNHYRQKYRPAS
HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA