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The map label for this gene is yjjV [H]

Identifier: 146283940

GI number: 146283940

Start: 3911545

End: 3912285

Strand: Direct

Name: yjjV [H]

Synonym: PST_3623

Alternate gene names: 146283940

Gene position: 3911545-3912285 (Clockwise)

Preceding gene: 146283939

Following gene: 146283945

Centisome position: 85.64

GC content: 68.42

Gene sequence:

>741_bases
ATGTTCGACGATGACCGGGCGCAGGTGATCGCCCGCGCCCGGAACGCCGGTGTCGAACGCATCGTGGTGCTCGGGGTGCA
TGCCGCCAACTGGCAGCGGGTCTGGCAGCTGGCCTGTGACGAACCTTCGGTGCATGCGGCGCTGGGCCTGCATCCGGTGT
TTCTCGAGGAGCACCAGGACGCCCACGTGCAGCAGCTGCGCGACTGGCTGGAGCGTCTGCGCGGCGAGCCTAAGCTCTGC
GCCGTCGGCGAGATCGGCCTGGATTACTACATCGACAACCCGGACATCGAGCGCCAGCAACGGTTGCTCGAGGCGCAGCT
GGCGCTGGCGGCCGATTTCTCCCTGCCGGTGCTGCTGCACGTGCGCCGCGCCCATGCGCCGATGATCGCCACGCTCAAGC
GTTACAAGCTCGAGCGTAGCGGCGTCATCCACGCCTTCAGCGGCAGCTGGGAGGAAGCGCGCGAGTATCTGCGCCTCGGA
TTCAGGCTCGGTCTCGGCGGCGCCGGCACCTGGCCCCAGGCGCAGCGGATGCATCGAGTACTGCGGCAATTGCCGTTGGA
GGCCATCGTGCTGGAAACCGACGCGCCGGACATTCCACCCGCCGGCCATGCCGGCGAACGCAACAGCCCCGAGCTGCTGC
CGGAAATCTGCCGACGCCTGGCCGACCTCAAGGGCATCGACGCGCACGCGCTGGCGGCGGCCAGCTATCGCAACAGCTGC
GAACTGTTCGGCTGGCGCTGA

Upstream 100 bases:

>100_bases
GAAAGCCGCTGAAGTCCCGGTAGCATTGCCCACCCGCCCTCGCAGACCGCATGGAGCTCTCGTGCAGCTGATCGACACTC
ATACCCACCTCGACTTCGAG

Downstream 100 bases:

>100_bases
GCCGCCCCGTCAGACGCGGAAGGCGGCGATCAGCTGCTGCAGGTGCCCGACCAGCTGGGTCAGCTCCCGACTCGCCTGCT
CGGTGTGGCCGGCGCCCTCG

Product: TatD family deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MFDDDRAQVIARARNAGVERIVVLGVHAANWQRVWQLACDEPSVHAALGLHPVFLEEHQDAHVQQLRDWLERLRGEPKLC
AVGEIGLDYYIDNPDIERQQRLLEAQLALAADFSLPVLLHVRRAHAPMIATLKRYKLERSGVIHAFSGSWEEAREYLRLG
FRLGLGGAGTWPQAQRMHRVLRQLPLEAIVLETDAPDIPPAGHAGERNSPELLPEICRRLADLKGIDAHALAAASYRNSC
ELFGWR

Sequences:

>Translated_246_residues
MFDDDRAQVIARARNAGVERIVVLGVHAANWQRVWQLACDEPSVHAALGLHPVFLEEHQDAHVQQLRDWLERLRGEPKLC
AVGEIGLDYYIDNPDIERQQRLLEAQLALAADFSLPVLLHVRRAHAPMIATLKRYKLERSGVIHAFSGSWEEAREYLRLG
FRLGLGGAGTWPQAQRMHRVLRQLPLEAIVLETDAPDIPPAGHAGERNSPELLPEICRRLADLKGIDAHALAAASYRNSC
ELFGWR
>Mature_246_residues
MFDDDRAQVIARARNAGVERIVVLGVHAANWQRVWQLACDEPSVHAALGLHPVFLEEHQDAHVQQLRDWLERLRGEPKLC
AVGEIGLDYYIDNPDIERQQRLLEAQLALAADFSLPVLLHVRRAHAPMIATLKRYKLERSGVIHAFSGSWEEAREYLRLG
FRLGLGGAGTWPQAQRMHRVLRQLPLEAIVLETDAPDIPPAGHAGERNSPELLPEICRRLADLKGIDAHALAAASYRNSC
ELFGWR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=269, Percent_Identity=27.1375464684015, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI110349730, Length=253, Percent_Identity=28.8537549407115, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI110349734, Length=253, Percent_Identity=29.2490118577075, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI225903424, Length=175, Percent_Identity=33.1428571428571, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI226061853, Length=258, Percent_Identity=28.2945736434109, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI225903439, Length=251, Percent_Identity=25.8964143426295, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI226061614, Length=243, Percent_Identity=27.9835390946502, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI226061595, Length=215, Percent_Identity=29.3023255813954, Blast_Score=72, Evalue=6e-13,
Organism=Escherichia coli, GI87082439, Length=243, Percent_Identity=43.6213991769547, Blast_Score=197, Evalue=5e-52,
Organism=Escherichia coli, GI48994985, Length=253, Percent_Identity=33.596837944664, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787342, Length=240, Percent_Identity=29.5833333333333, Blast_Score=112, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17559024, Length=271, Percent_Identity=26.5682656826568, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71980746, Length=253, Percent_Identity=22.9249011857708, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17543026, Length=182, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17565396, Length=212, Percent_Identity=28.7735849056604, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI221330018, Length=269, Percent_Identity=30.8550185873606, Blast_Score=100, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24586117, Length=269, Percent_Identity=30.8550185873606, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI24648690, Length=273, Percent_Identity=26.7399267399267, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 27712; Mature: 27712

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDDDRAQVIARARNAGVERIVVLGVHAANWQRVWQLACDEPSVHAALGLHPVFLEEHQD
CCCCHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCHHHHHCCCC
AHVQQLRDWLERLRGEPKLCAVGEIGLDYYIDNPDIERQQRLLEAQLALAADFSLPVLLH
HHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHH
VRRAHAPMIATLKRYKLERSGVIHAFSGSWEEAREYLRLGFRLGLGGAGTWPQAQRMHRV
HHHHCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LRQLPLEAIVLETDAPDIPPAGHAGERNSPELLPEICRRLADLKGIDAHALAAASYRNSC
HHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
ELFGWR
CCCCCC
>Mature Secondary Structure
MFDDDRAQVIARARNAGVERIVVLGVHAANWQRVWQLACDEPSVHAALGLHPVFLEEHQD
CCCCHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCHHHHHCCCC
AHVQQLRDWLERLRGEPKLCAVGEIGLDYYIDNPDIERQQRLLEAQLALAADFSLPVLLH
HHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHH
VRRAHAPMIATLKRYKLERSGVIHAFSGSWEEAREYLRLGFRLGLGGAGTWPQAQRMHRV
HHHHCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LRQLPLEAIVLETDAPDIPPAGHAGERNSPELLPEICRRLADLKGIDAHALAAASYRNSC
HHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
ELFGWR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]